Wall clock time and date at job start Sat Apr 11 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86801 * 119.99977 * 2 1 4 4 H 1.48502 * 109.46656 * 275.38558 * 3 2 1 5 5 H 1.48498 * 109.47275 * 35.38380 * 3 2 1 6 6 H 1.48493 * 109.47107 * 155.38851 * 3 2 1 7 7 C 1.39943 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00484 * 342.07896 * 7 2 1 9 9 C 1.41404 * 119.99766 * 162.08847 * 7 2 1 10 10 C 1.40731 * 120.24271 * 329.77933 * 9 7 2 11 11 C 1.37594 * 119.74704 * 180.02562 * 10 9 7 12 12 C 1.38657 * 120.24746 * 0.02562 * 11 10 9 13 13 C 1.38614 * 120.50063 * 359.97438 * 12 11 10 14 14 C 1.37643 * 120.25076 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.12947 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.46795 * 265.01758 * 15 14 13 17 17 O 1.21277 * 120.00037 * 0.02562 * 16 15 14 18 18 N 1.34769 * 119.99402 * 179.97438 * 16 15 14 19 19 C 1.46927 * 120.63624 * 359.72232 * 18 16 15 20 20 C 1.53620 * 108.54539 * 126.36764 * 19 18 16 21 21 C 1.53042 * 109.24287 * 54.85444 * 20 19 18 22 22 C 1.53041 * 109.54172 * 298.51499 * 21 20 19 23 23 H 1.08999 * 109.49436 * 301.40920 * 22 21 20 24 24 C 1.50699 * 109.49967 * 181.31244 * 22 21 20 25 25 N 1.33238 * 125.52531 * 299.85733 * 24 22 21 26 26 C 1.30838 * 109.82553 * 179.84897 * 25 24 22 27 27 N 1.34430 * 108.07528 * 0.40676 * 26 25 24 28 28 H 0.97004 * 126.82242 * 179.78793 * 27 26 25 29 29 N 1.30712 * 125.52371 * 120.15556 * 24 22 21 30 30 C 1.46929 * 120.62878 * 180.02562 * 18 16 15 31 31 H 0.96998 * 119.99901 * 0.02562 * 1 2 3 32 32 H 1.08001 * 120.12617 * 0.02562 * 10 9 7 33 33 H 1.08001 * 119.87807 * 180.02562 * 11 10 9 34 34 H 1.07998 * 119.74942 * 179.71905 * 12 11 10 35 35 H 1.08001 * 119.87842 * 180.02562 * 13 12 11 36 36 H 1.08997 * 109.46913 * 25.01445 * 15 14 13 37 37 H 1.08997 * 109.47110 * 145.02174 * 15 14 13 38 38 H 1.09004 * 109.58754 * 246.20301 * 19 18 16 39 39 H 1.08996 * 109.58414 * 6.62699 * 19 18 16 40 40 H 1.09002 * 109.63701 * 294.86842 * 20 19 18 41 41 H 1.08995 * 109.46077 * 174.74401 * 20 19 18 42 42 H 1.08996 * 109.46419 * 178.48763 * 21 20 19 43 43 H 1.09005 * 109.45767 * 58.53137 * 21 20 19 44 44 H 1.07998 * 125.96286 * 180.18877 * 26 25 24 45 45 H 1.09001 * 109.58504 * 353.37073 * 30 18 16 46 46 H 1.08997 * 109.59154 * 113.79743 * 30 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3759 2.1120 -1.3939 5 1 1.5012 2.6172 0.8107 6 1 3.5920 1.4100 0.5831 7 6 2.0079 -1.2120 0.0005 8 1 1.5072 -2.1245 0.2887 9 6 3.3705 -1.2418 -0.3761 10 6 3.8685 -0.3134 -1.3091 11 6 5.1961 -0.3520 -1.6687 12 6 6.0421 -1.3013 -1.1158 13 6 5.5625 -2.2207 -0.1959 14 6 4.2381 -2.2007 0.1784 15 6 3.7195 -3.2018 1.1783 16 6 3.1225 -4.3775 0.4485 17 8 3.1190 -4.4003 -0.7640 18 7 2.5934 -5.4038 1.1434 19 6 2.5967 -5.3939 2.6127 20 6 1.1599 -5.6218 3.1061 21 6 0.6128 -6.9104 2.4879 22 6 0.5824 -6.7744 0.9638 23 1 -0.0391 -5.9229 0.6869 24 6 0.0135 -8.0314 0.3578 25 7 0.5248 -9.2547 0.4900 26 6 -0.2149 -10.1172 -0.1587 27 7 -1.2274 -9.4474 -0.7361 28 1 -1.9346 -9.8221 -1.2842 29 7 -1.0585 -8.0976 -0.3872 30 6 2.0082 -6.5572 0.4462 31 1 -0.4850 0.8400 -0.0004 32 1 3.2112 0.4266 -1.7412 33 1 5.5806 0.3597 -2.3842 34 1 7.0817 -1.3273 -1.4072 35 1 6.2305 -2.9555 0.2287 36 1 4.5401 -3.5441 1.8088 37 1 2.9555 -2.7333 1.7987 38 1 3.2435 -6.1898 2.9821 39 1 2.9589 -4.4302 2.9707 40 1 0.5329 -4.7811 2.8090 41 1 1.1588 -5.7103 4.1924 42 1 -0.3971 -7.0899 2.8566 43 1 1.2543 -7.7470 2.7650 44 1 -0.0403 -11.1811 -0.2224 45 1 1.9820 -6.3613 -0.6257 46 1 2.6079 -7.4459 0.6428 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455343070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:37 Heat of formation + Delta-G solvation = 65.452181 kcal Electronic energy + Delta-G solvation = -29433.694887 eV Core-core repulsion = 25517.339424 eV Total energy + Delta-G solvation = -3916.355463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.30232 -39.77812 -37.94573 -36.81836 -33.78526 -33.51134 -32.22470 -31.82231 -31.60693 -30.28724 -30.12994 -27.16022 -25.17732 -24.65756 -23.76749 -22.93824 -21.54502 -21.29034 -20.16892 -19.59379 -18.41753 -18.37746 -17.26466 -16.61790 -15.90240 -15.60516 -15.55676 -15.13011 -14.94919 -14.43895 -14.28540 -14.10690 -13.71916 -13.61556 -13.59640 -12.95379 -12.69419 -12.53607 -12.46762 -12.28006 -12.03181 -11.81150 -11.39117 -11.29862 -11.11606 -10.92723 -10.84633 -10.73891 -10.71116 -10.65065 -10.23571 -10.17737 -10.15666 -9.81111 -9.63706 -9.47335 -9.08310 -9.05271 -8.25557 -7.51809 -7.41874 -6.86026 -4.39711 1.43485 2.45966 2.62818 2.71765 2.79536 3.17906 3.24741 3.35915 3.38230 3.45478 3.95920 4.05240 4.43345 4.58484 4.71623 4.83032 4.99198 5.03547 5.17452 5.30408 5.41220 5.55449 5.58795 5.68731 5.83729 5.85072 5.93466 5.97253 6.01254 6.02453 6.11557 6.16234 6.20516 6.23109 6.26835 6.35546 6.39545 6.65627 6.79737 6.81824 6.89105 7.03108 7.28649 7.50623 7.74081 7.81561 7.89062 7.91518 7.99635 8.22729 8.44357 8.76687 8.88978 8.90609 10.16144 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.003147 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.936857 B = 8894.508719 C = 9487.918403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.085 3.915 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.443 4.443 8 H 0.089 0.911 9 C 0.109 3.891 10 C -0.234 4.234 11 C -0.081 4.081 12 C -0.242 4.242 13 C -0.069 4.069 14 C -0.166 4.166 15 C -0.072 4.072 16 C 0.521 3.479 17 O -0.520 6.520 18 N -0.623 5.623 19 C 0.109 3.891 20 C -0.136 4.136 21 C -0.103 4.103 22 C -0.011 4.011 23 H 0.099 0.901 24 C 0.242 3.758 25 N -0.537 5.537 26 C 0.257 3.743 27 N -0.488 5.488 28 H 0.441 0.559 29 N -0.308 5.308 30 C 0.129 3.871 31 H 0.283 0.717 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.221 0.779 45 H 0.090 0.910 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 -16.970 6.523 18.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.133 4.133 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.167 1.167 7 C -0.472 4.472 8 H 0.107 0.893 9 C 0.107 3.893 10 C -0.253 4.253 11 C -0.099 4.099 12 C -0.262 4.262 13 C -0.088 4.088 14 C -0.167 4.167 15 C -0.112 4.112 16 C 0.310 3.690 17 O -0.394 6.394 18 N -0.359 5.359 19 C -0.015 4.015 20 C -0.175 4.175 21 C -0.141 4.141 22 C -0.033 4.033 23 H 0.117 0.883 24 C -0.041 4.041 25 N -0.265 5.265 26 C -0.042 4.042 27 N -0.206 5.206 28 H 0.286 0.714 29 N -0.137 5.137 30 C 0.005 3.995 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.238 0.762 45 H 0.108 0.892 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.401 -16.304 5.873 17.386 hybrid contribution -0.484 0.036 -0.590 0.764 sum -1.885 -16.269 5.284 17.209 Atomic orbital electron populations 1.69713 1.08048 1.29990 1.35683 1.26141 0.94651 1.01594 0.90923 0.86363 0.81342 0.79984 0.78782 1.19825 1.22043 1.16667 1.19414 0.92966 0.95717 1.39102 0.89284 1.17485 0.92650 0.90131 0.89079 1.20993 0.95491 1.04724 1.04061 1.20590 0.93913 0.97308 0.98100 1.20324 0.98142 1.01847 1.05847 1.20432 0.94606 0.96886 0.96857 1.19094 0.93045 1.01461 1.03130 1.20324 1.00492 0.92539 0.97815 1.21129 0.77109 0.82618 0.88142 1.90679 1.56090 1.78477 1.14135 1.48168 1.61014 1.20290 1.06472 1.21805 0.96712 1.02976 0.79978 1.22022 0.96845 0.98198 1.00398 1.21461 1.01667 0.98514 0.92476 1.19961 0.97342 0.90475 0.95488 0.88277 1.24130 0.90639 0.94355 0.94987 1.70384 1.30662 0.99813 1.25611 1.26109 0.85813 1.00259 0.92044 1.48158 1.24720 1.05945 1.41752 0.71405 1.78133 1.21063 0.94308 1.20168 1.21324 0.90879 0.88777 0.98512 0.90670 0.88382 0.89079 0.89059 0.89109 0.90342 0.88119 0.91560 0.89101 0.90681 0.90414 0.91880 0.90729 0.76232 0.89182 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.92 13.93 55.55 0.77 -21.15 16 2 C 0.09 2.27 5.41 -17.34 -0.09 2.17 16 3 Si 0.91 21.18 24.52 -169.99 -4.17 17.01 16 4 H -0.27 -6.27 6.72 56.52 0.38 -5.89 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.24 -5.76 6.86 56.52 0.39 -5.37 16 7 C -0.44 -12.11 8.56 -37.74 -0.32 -12.43 16 8 H 0.09 2.56 7.00 -52.49 -0.37 2.19 16 9 C 0.11 2.86 5.10 -106.82 -0.54 2.32 16 10 C -0.23 -5.96 7.17 -38.88 -0.28 -6.24 16 11 C -0.08 -1.87 10.02 -39.66 -0.40 -2.26 16 12 C -0.24 -5.34 10.05 -39.29 -0.39 -5.74 16 13 C -0.07 -1.53 9.66 -39.66 -0.38 -1.92 16 14 C -0.17 -3.88 4.43 -103.91 -0.46 -4.34 16 15 C -0.07 -1.40 3.54 -29.03 -0.10 -1.50 16 16 C 0.52 10.58 7.31 -10.99 -0.08 10.50 16 17 O -0.52 -12.99 15.45 5.56 0.09 -12.91 16 18 N -0.62 -10.00 2.97 -172.48 -0.51 -10.51 16 19 C 0.11 1.29 6.37 -3.49 -0.02 1.27 16 20 C -0.14 -1.49 6.10 -26.39 -0.16 -1.65 16 21 C -0.10 -1.16 5.15 -26.69 -0.14 -1.30 16 22 C -0.01 -0.15 2.81 -91.63 -0.26 -0.41 16 23 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 24 C 0.24 3.33 6.65 -156.86 -1.04 2.29 16 25 N -0.54 -6.44 11.19 -11.98 -0.13 -6.57 16 26 C 0.26 2.06 13.13 -90.65 -1.19 0.87 16 27 N -0.49 -4.30 7.45 29.53 0.22 -4.08 16 28 H 0.44 2.15 8.96 -182.33 -1.63 0.52 16 29 N -0.31 -4.28 12.80 32.42 0.41 -3.86 16 30 C 0.13 2.00 5.70 -3.69 -0.02 1.98 16 31 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 32 H 0.10 2.50 4.77 -52.49 -0.25 2.25 16 33 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.08 1.24 7.84 -51.93 -0.41 0.83 16 37 H 0.10 1.94 6.69 -51.93 -0.35 1.59 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.22 0.55 8.06 -52.49 -0.42 0.13 16 45 H 0.09 1.66 7.01 -51.93 -0.36 1.29 16 46 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 371.84 15.07 5.60 5.60 Total: -1.00 -35.49 371.84 -11.11 -46.59 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.50 Total: 6.25 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -5.89 Total: -16.38 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.76 Total: -46.17 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.17 Total: 17.01 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.49 -11.11 -46.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455343070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.046 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds