Wall clock time and date at job start Sat Apr 11 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00446 * 2 1 4 4 H 1.48502 * 109.47160 * 270.00439 * 3 2 1 5 5 H 1.48507 * 109.46912 * 30.00208 * 3 2 1 6 6 H 1.48499 * 109.47500 * 149.99994 * 3 2 1 7 7 C 1.38814 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99711 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00138 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99885 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47111 * 324.99525 * 10 9 7 12 12 C 1.52999 * 109.46902 * 205.00158 * 10 9 7 13 13 N 1.46502 * 109.47204 * 54.99605 * 12 10 9 14 14 C 1.34784 * 119.99890 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.47582 * 119.99764 * 180.02562 * 14 13 12 17 17 C 1.39810 * 120.00551 * 359.95079 * 16 14 13 18 18 C 1.36584 * 119.99720 * 180.02562 * 17 16 14 19 19 C 1.39785 * 120.00068 * 0.02562 * 18 17 16 20 20 C 1.47655 * 119.99361 * 179.97438 * 19 18 17 21 21 C 1.36250 * 126.77922 * 0.02562 * 20 19 18 22 22 N 1.33681 * 107.86300 * 179.97438 * 21 20 19 23 23 C 1.30659 * 109.57556 * 0.02562 * 22 21 20 24 24 N 1.34958 * 109.03084 * 359.75339 * 23 22 21 25 25 H 0.96995 * 126.45918 * 180.29721 * 24 23 22 26 26 C 1.39775 * 120.01012 * 0.02562 * 19 18 17 27 27 C 1.36586 * 120.00434 * 359.97438 * 26 19 18 28 28 C 1.52992 * 109.47215 * 85.00090 * 10 9 7 29 29 C 1.52998 * 117.50311 * 8.74402 * 28 10 9 30 30 C 1.53002 * 117.50137 * 300.08508 * 28 10 9 31 31 H 0.97004 * 119.99564 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99804 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.47168 * 294.99793 * 12 10 9 34 34 H 1.08999 * 109.47314 * 174.99709 * 12 10 9 35 35 H 0.96998 * 120.00506 * 0.02562 * 13 12 10 36 36 H 1.08002 * 120.00316 * 0.03145 * 17 16 14 37 37 H 1.07995 * 119.99767 * 180.28627 * 18 17 16 38 38 H 1.08000 * 126.06788 * 359.97438 * 21 20 19 39 39 H 1.07998 * 125.48264 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00020 * 179.97438 * 26 19 18 41 41 H 1.08000 * 120.00124 * 180.02562 * 27 26 19 42 42 H 1.09004 * 115.54969 * 154.41913 * 28 10 9 43 43 H 1.09002 * 117.49504 * 359.97438 * 29 28 10 44 44 H 1.08999 * 117.50396 * 145.01862 * 29 28 10 45 45 H 1.08995 * 117.50216 * 214.98386 * 30 28 10 46 46 H 1.09003 * 117.49478 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 -0.5901 12 6 1.1808 -4.7521 -0.6102 13 7 0.7341 -4.3354 -1.9418 14 6 -0.0550 -5.1476 -2.6727 15 8 -0.3965 -6.2260 -2.2268 16 6 -0.5045 -4.7280 -4.0144 17 6 -0.1127 -3.4876 -4.5268 18 6 -0.5292 -3.0992 -5.7682 19 6 -1.3476 -3.9416 -6.5262 20 6 -1.7982 -3.5214 -7.8680 21 6 -1.5013 -2.3507 -8.4987 22 7 -2.1036 -2.3637 -9.6921 23 6 -2.7618 -3.4829 -9.8381 24 7 -2.5976 -4.2376 -8.7314 25 1 -2.9727 -5.1180 -8.5733 26 6 -1.7402 -5.1813 -6.0136 27 6 -1.3239 -5.5700 -4.7722 28 6 2.4218 -4.0357 1.4364 29 6 1.8133 -3.1987 2.5634 30 6 3.2994 -3.0603 2.2235 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 0.3132 -4.9201 0.0280 34 1 1.7556 -5.6746 -0.6920 35 1 1.0068 -3.4753 -2.2977 36 1 0.5194 -2.8365 -3.9410 37 1 -0.2228 -2.1430 -6.1659 38 1 -0.8883 -1.5538 -8.1045 39 1 -3.3409 -3.7609 -10.7063 40 1 -2.3729 -5.8319 -6.5992 41 1 -1.6270 -6.5281 -4.3764 42 1 2.5631 -5.1007 1.6204 43 1 1.1541 -2.3779 2.2810 44 1 1.5545 -3.7130 3.4889 45 1 4.0177 -3.4837 2.9256 46 1 3.6178 -2.1490 1.7174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480056134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:50 Heat of formation + Delta-G solvation = 86.770614 kcal Electronic energy + Delta-G solvation = -28191.027580 eV Core-core repulsion = 24275.596554 eV Total energy + Delta-G solvation = -3915.431026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.30120 -40.05994 -38.42988 -37.52129 -34.57687 -33.35437 -33.11970 -32.31486 -31.39573 -30.68315 -28.87257 -27.85409 -24.58848 -23.58996 -23.10225 -22.46135 -21.68474 -21.47916 -20.84773 -20.17241 -19.18775 -18.88246 -17.81005 -17.10199 -16.00118 -15.62197 -15.36433 -15.30392 -14.97853 -14.90237 -14.69095 -14.46610 -14.12858 -13.96120 -13.72931 -13.63415 -13.51287 -12.99960 -12.95310 -12.74092 -12.26500 -12.05245 -11.34434 -11.23106 -11.16367 -10.91860 -10.86908 -10.54673 -10.44166 -10.34929 -10.14993 -9.82152 -9.77478 -9.69091 -9.47603 -9.24489 -9.19406 -9.01791 -8.70096 -8.05069 -7.11017 -5.87102 -3.17673 0.37082 1.27844 1.88594 2.69583 2.78478 3.14835 3.36268 3.43119 3.44715 3.47671 3.90037 4.24938 4.46662 4.48548 4.53057 4.61029 4.71170 4.93152 5.01118 5.15242 5.19052 5.28310 5.33741 5.43749 5.54038 5.58548 5.69782 5.71587 5.82094 5.83879 5.94924 6.01601 6.03915 6.15666 6.25894 6.30042 6.36834 6.38035 6.42776 6.61819 6.66301 6.71139 6.85719 6.98180 6.98360 7.25563 7.62355 7.70503 7.86632 8.29659 8.48221 9.42269 9.95454 10.31860 11.34052 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.002719 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.072100 B =10293.936461 C =12357.880767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.191 3.809 11 H 0.058 0.942 12 C 0.119 3.881 13 N -0.705 5.705 14 C 0.553 3.447 15 O -0.552 6.552 16 C -0.128 4.128 17 C -0.069 4.069 18 C -0.107 4.107 19 C 0.008 3.992 20 C 0.010 3.990 21 C 0.006 3.994 22 N -0.494 5.494 23 C 0.192 3.808 24 N -0.565 5.565 25 H 0.421 0.579 26 C -0.133 4.133 27 C -0.054 4.054 28 C -0.178 4.178 29 C -0.163 4.163 30 C -0.176 4.176 31 H 0.256 0.744 32 H 0.386 0.614 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.176 0.824 39 H 0.211 0.789 40 H 0.119 0.881 41 H 0.137 0.863 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 -10.788 -13.974 17.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.080 3.920 11 H 0.076 0.924 12 C -0.006 4.006 13 N -0.356 5.356 14 C 0.340 3.660 15 O -0.432 6.432 16 C -0.131 4.131 17 C -0.088 4.088 18 C -0.126 4.126 19 C 0.006 3.994 20 C -0.105 4.105 21 C -0.144 4.144 22 N -0.212 5.212 23 C -0.091 4.091 24 N -0.168 5.168 25 H 0.259 0.741 26 C -0.152 4.152 27 C -0.073 4.073 28 C -0.200 4.200 29 C -0.200 4.200 30 C -0.213 4.213 31 H 0.066 0.934 32 H 0.221 0.779 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.248 0.752 36 H 0.157 0.843 37 H 0.153 0.847 38 H 0.193 0.807 39 H 0.227 0.773 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.932 -10.710 -14.248 18.064 hybrid contribution -0.013 0.283 0.646 0.705 sum -2.945 -10.427 -13.602 17.390 Atomic orbital electron populations 1.69656 1.05006 1.25787 1.56965 1.24708 0.95404 0.97529 1.02687 0.86282 0.78759 0.84140 0.77523 1.21716 1.21873 1.20796 1.19152 0.90891 0.83759 1.43431 0.91066 1.42482 1.05846 0.99469 1.88146 1.20002 0.94087 0.86061 0.91807 0.92450 1.21619 0.98893 0.97507 0.82538 1.45919 1.50112 1.21702 1.17902 1.18162 0.78726 0.84349 0.84789 1.90741 1.57457 1.22625 1.72408 1.20132 1.01578 0.96001 0.95385 1.21180 0.97565 0.94794 0.95212 1.20784 0.97762 0.99788 0.94219 1.18073 0.96935 0.94353 0.90044 1.19716 1.02448 0.95247 0.93053 1.22526 1.03246 0.97110 0.91498 1.70188 1.11902 1.20213 1.18945 1.25055 1.03075 0.88787 0.92154 1.43324 1.39813 1.18431 1.15201 0.74099 1.20712 1.02041 0.95880 0.96542 1.20865 0.94161 0.99394 0.92832 1.23060 1.06028 0.95359 0.95507 1.22913 0.96710 1.03505 0.96855 1.22854 0.93492 1.01886 1.03023 0.93414 0.77912 0.91495 0.91678 0.75227 0.84303 0.84655 0.80653 0.77302 0.86321 0.84490 0.89617 0.86328 0.91291 0.91029 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.60 13.06 55.49 0.72 -24.88 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 20.90 29.55 -169.99 -5.02 15.87 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.24 -5.82 8.15 -15.06 -0.12 -5.94 16 8 H 0.07 1.71 6.91 -52.48 -0.36 1.34 16 9 N -0.72 -15.40 3.08 -53.42 -0.16 -15.56 16 10 C 0.19 3.39 2.86 -67.93 -0.19 3.20 16 11 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 12 C 0.12 1.96 5.22 -4.04 -0.02 1.93 16 13 N -0.70 -11.37 5.34 -61.33 -0.33 -11.69 16 14 C 0.55 9.13 7.76 -12.45 -0.10 9.04 16 15 O -0.55 -10.57 16.33 5.29 0.09 -10.48 16 16 C -0.13 -1.78 5.88 -104.91 -0.62 -2.40 16 17 C -0.07 -0.87 9.48 -39.59 -0.38 -1.24 16 18 C -0.11 -1.20 9.52 -39.60 -0.38 -1.57 16 19 C 0.01 0.08 5.88 -104.90 -0.62 -0.53 16 20 C 0.01 0.10 6.96 -82.08 -0.57 -0.47 16 21 C 0.01 0.07 11.28 -17.46 -0.20 -0.13 16 22 N -0.49 -5.61 11.22 -14.38 -0.16 -5.77 16 23 C 0.19 1.49 13.02 -90.32 -1.18 0.32 16 24 N -0.56 -4.12 6.06 -10.65 -0.06 -4.18 16 25 H 0.42 1.74 8.20 -40.82 -0.33 1.40 16 26 C -0.13 -1.35 9.65 -39.60 -0.38 -1.73 16 27 C -0.05 -0.66 9.53 -39.59 -0.38 -1.03 16 28 C -0.18 -3.02 5.70 -90.62 -0.52 -3.54 16 29 C -0.16 -2.99 9.74 -26.70 -0.26 -3.25 16 30 C -0.18 -3.07 9.87 -26.70 -0.26 -3.33 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 9.19 7.80 -40.82 -0.32 8.87 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.41 6.54 6.15 -40.82 -0.25 6.28 16 36 H 0.14 1.73 6.38 -52.49 -0.34 1.40 16 37 H 0.14 1.27 7.04 -52.49 -0.37 0.90 16 38 H 0.18 1.65 7.30 -52.49 -0.38 1.27 16 39 H 0.21 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.84 7.27 -52.49 -0.38 0.46 16 41 H 0.14 1.63 7.64 -52.49 -0.40 1.23 16 42 H 0.09 1.30 8.11 -51.93 -0.42 0.88 16 43 H 0.12 2.61 6.68 -51.93 -0.35 2.26 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 46 H 0.10 2.01 6.22 -51.93 -0.32 1.69 16 LS Contribution 384.69 15.07 5.80 5.80 Total: -1.00 -31.22 384.69 -11.29 -42.51 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: -5.90 Total: 19.35 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -6.26 Total: -10.96 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.01 Total: -62.09 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.09 Total: -10.48 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.22 -11.29 -42.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480056134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.279 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds