Wall clock time and date at job start Sat Apr 11 2020 06:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00446 * 2 1 4 4 H 1.48502 * 109.47160 * 270.00439 * 3 2 1 5 5 H 1.48507 * 109.46912 * 30.00208 * 3 2 1 6 6 H 1.48499 * 109.47500 * 149.99994 * 3 2 1 7 7 C 1.38814 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99711 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00138 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99885 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47111 * 324.99525 * 10 9 7 12 12 C 1.52999 * 109.46902 * 205.00158 * 10 9 7 13 13 N 1.46502 * 109.47204 * 54.99605 * 12 10 9 14 14 C 1.34784 * 119.99890 * 179.97438 * 13 12 10 15 15 O 1.21592 * 119.99854 * 0.02562 * 14 13 12 16 16 C 1.47582 * 119.99764 * 180.02562 * 14 13 12 17 17 C 1.39810 * 120.00551 * 359.95079 * 16 14 13 18 18 C 1.36584 * 119.99720 * 180.02562 * 17 16 14 19 19 C 1.39785 * 120.00068 * 0.02562 * 18 17 16 20 20 C 1.47655 * 119.99361 * 179.97438 * 19 18 17 21 21 C 1.36250 * 126.77922 * 0.02562 * 20 19 18 22 22 N 1.33681 * 107.86300 * 179.97438 * 21 20 19 23 23 C 1.30659 * 109.57556 * 0.02562 * 22 21 20 24 24 N 1.34958 * 109.03084 * 359.75339 * 23 22 21 25 25 H 0.96995 * 126.45918 * 180.29721 * 24 23 22 26 26 C 1.39775 * 120.01012 * 0.02562 * 19 18 17 27 27 C 1.36586 * 120.00434 * 359.97438 * 26 19 18 28 28 C 1.52992 * 109.47215 * 85.00090 * 10 9 7 29 29 C 1.52998 * 117.50311 * 8.74402 * 28 10 9 30 30 C 1.53002 * 117.50137 * 300.08508 * 28 10 9 31 31 H 0.97004 * 119.99564 * 359.97438 * 1 2 3 32 32 H 0.96996 * 119.99804 * 0.02562 * 9 7 2 33 33 H 1.09006 * 109.47168 * 294.99793 * 12 10 9 34 34 H 1.08999 * 109.47314 * 174.99709 * 12 10 9 35 35 H 0.96998 * 120.00506 * 0.02562 * 13 12 10 36 36 H 1.08002 * 120.00316 * 0.03145 * 17 16 14 37 37 H 1.07995 * 119.99767 * 180.28627 * 18 17 16 38 38 H 1.08000 * 126.06788 * 359.97438 * 21 20 19 39 39 H 1.07998 * 125.48264 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00020 * 179.97438 * 26 19 18 41 41 H 1.08000 * 120.00124 * 180.02562 * 27 26 19 42 42 H 1.09004 * 115.54969 * 154.41913 * 28 10 9 43 43 H 1.09002 * 117.49504 * 359.97438 * 29 28 10 44 44 H 1.08999 * 117.50396 * 145.01862 * 29 28 10 45 45 H 1.08995 * 117.50216 * 214.98386 * 30 28 10 46 46 H 1.09003 * 117.49478 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5506 -0.5901 12 6 1.1808 -4.7521 -0.6102 13 7 0.7341 -4.3354 -1.9418 14 6 -0.0550 -5.1476 -2.6727 15 8 -0.3965 -6.2260 -2.2268 16 6 -0.5045 -4.7280 -4.0144 17 6 -0.1127 -3.4876 -4.5268 18 6 -0.5292 -3.0992 -5.7682 19 6 -1.3476 -3.9416 -6.5262 20 6 -1.7982 -3.5214 -7.8680 21 6 -1.5013 -2.3507 -8.4987 22 7 -2.1036 -2.3637 -9.6921 23 6 -2.7618 -3.4829 -9.8381 24 7 -2.5976 -4.2376 -8.7314 25 1 -2.9727 -5.1180 -8.5733 26 6 -1.7402 -5.1813 -6.0136 27 6 -1.3239 -5.5700 -4.7722 28 6 2.4218 -4.0357 1.4364 29 6 1.8133 -3.1987 2.5634 30 6 3.2994 -3.0603 2.2235 31 1 -0.4850 0.8401 0.0004 32 1 0.3555 -2.3880 -0.0005 33 1 0.3132 -4.9201 0.0280 34 1 1.7556 -5.6746 -0.6920 35 1 1.0068 -3.4753 -2.2977 36 1 0.5194 -2.8365 -3.9410 37 1 -0.2228 -2.1430 -6.1659 38 1 -0.8883 -1.5538 -8.1045 39 1 -3.3409 -3.7609 -10.7063 40 1 -2.3729 -5.8319 -6.5992 41 1 -1.6270 -6.5281 -4.3764 42 1 2.5631 -5.1007 1.6204 43 1 1.1541 -2.3779 2.2810 44 1 1.5545 -3.7130 3.4889 45 1 4.0177 -3.4837 2.9256 46 1 3.6178 -2.1490 1.7174 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480056134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:49 Heat of formation + Delta-G solvation = 68.951845 kcal Electronic energy + Delta-G solvation = -28191.800260 eV Core-core repulsion = 24275.596554 eV Total energy + Delta-G solvation = -3916.203706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.98855 -41.21637 -39.60259 -38.92269 -35.96587 -35.07789 -33.96348 -33.19069 -32.63127 -31.98641 -30.08586 -29.06228 -25.88783 -25.14247 -24.10780 -23.63924 -22.96425 -22.44675 -21.66138 -21.33197 -20.58035 -19.69074 -19.27339 -18.61698 -17.23726 -16.85073 -16.44849 -16.34640 -16.19991 -15.99994 -15.91550 -15.78030 -15.28176 -15.10808 -14.86865 -14.76805 -14.52660 -14.39418 -14.12572 -13.87904 -13.54210 -13.19865 -12.91721 -12.84775 -12.65321 -12.57697 -12.12327 -12.08680 -11.93855 -11.57659 -11.17160 -11.16316 -11.06520 -11.01522 -10.80256 -10.63337 -10.60593 -10.14415 -10.03810 -8.97728 -8.87136 -7.86301 -5.13927 -0.55242 0.38095 1.07840 1.50513 1.53030 1.58712 1.89864 2.10980 2.19389 2.23839 2.60103 2.90466 3.14605 3.48196 3.52796 3.68997 3.76684 3.85781 3.89788 3.98064 4.00677 4.22822 4.27975 4.31101 4.34822 4.46888 4.50837 4.52014 4.59307 4.64137 4.73226 4.88940 4.93622 4.98074 4.99401 5.19444 5.23604 5.26740 5.30856 5.42769 5.44493 5.53525 5.63720 5.68591 5.69736 5.77397 6.33216 6.48091 6.55810 7.03253 7.18120 7.42145 8.12181 8.38031 9.35759 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011558 B = 0.002719 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.072100 B =10293.936461 C =12357.880767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.064 4.064 3 Si 0.954 3.046 4 H -0.289 1.289 5 H -0.306 1.306 6 H -0.274 1.274 7 C -0.217 4.217 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.192 3.808 11 H 0.062 0.938 12 C 0.127 3.873 13 N -0.705 5.705 14 C 0.551 3.449 15 O -0.584 6.584 16 C -0.152 4.152 17 C -0.074 4.074 18 C -0.114 4.114 19 C 0.016 3.984 20 C -0.004 4.004 21 C -0.009 4.009 22 N -0.538 5.538 23 C 0.210 3.790 24 N -0.553 5.553 25 H 0.437 0.563 26 C -0.125 4.125 27 C -0.058 4.058 28 C -0.168 4.168 29 C -0.173 4.173 30 C -0.170 4.170 31 H 0.246 0.754 32 H 0.374 0.626 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.410 0.590 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.178 0.822 39 H 0.253 0.747 40 H 0.154 0.846 41 H 0.138 0.862 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.101 0.899 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 -12.360 -15.518 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.257 4.257 3 Si 0.786 3.214 4 H -0.216 1.216 5 H -0.234 1.234 6 H -0.199 1.199 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.360 5.360 10 C 0.083 3.917 11 H 0.080 0.920 12 C 0.003 3.997 13 N -0.356 5.356 14 C 0.340 3.660 15 O -0.466 6.466 16 C -0.155 4.155 17 C -0.092 4.092 18 C -0.133 4.133 19 C 0.015 3.985 20 C -0.119 4.119 21 C -0.159 4.159 22 N -0.258 5.258 23 C -0.073 4.073 24 N -0.157 5.157 25 H 0.279 0.721 26 C -0.143 4.143 27 C -0.077 4.077 28 C -0.189 4.189 29 C -0.211 4.211 30 C -0.207 4.207 31 H 0.055 0.945 32 H 0.206 0.794 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.151 0.849 37 H 0.167 0.833 38 H 0.195 0.805 39 H 0.269 0.731 40 H 0.172 0.828 41 H 0.156 0.844 42 H 0.133 0.867 43 H 0.096 0.904 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.565 -12.324 -15.784 20.189 hybrid contribution -0.127 0.709 1.011 1.241 sum -2.691 -11.615 -14.773 18.984 Atomic orbital electron populations 1.69796 1.06251 1.25475 1.59797 1.25273 0.95933 1.00079 1.04372 0.85423 0.77757 0.81048 0.77200 1.21640 1.23374 1.19944 1.19390 0.91054 0.84478 1.39974 0.90612 1.42524 1.05258 1.00248 1.87956 1.20138 0.93977 0.84821 0.92792 0.92007 1.21512 0.98209 0.97540 0.82467 1.45916 1.50170 1.21706 1.17766 1.18562 0.78036 0.83784 0.85591 1.90708 1.58689 1.23867 1.73362 1.20035 1.03625 0.97232 0.94644 1.21142 0.97862 0.94391 0.95840 1.20973 0.97881 1.00628 0.93768 1.18197 0.95898 0.94221 0.90219 1.19558 1.03646 0.95600 0.93091 1.22745 1.03533 0.97743 0.91881 1.70188 1.13708 1.22390 1.19467 1.25900 1.01206 0.87452 0.92733 1.43296 1.38965 1.18975 1.14471 0.72130 1.21004 1.01564 0.95957 0.95805 1.20972 0.93946 0.99223 0.93529 1.23054 1.05026 0.96795 0.94064 1.22773 0.96779 1.03095 0.98430 1.22845 0.93368 1.01182 1.03324 0.94460 0.79374 0.92893 0.89984 0.75195 0.84893 0.83302 0.80463 0.73150 0.82825 0.84424 0.86659 0.90411 0.89164 0.88087 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.93 13.06 21.65 0.28 -54.64 16 2 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 3 Si 0.95 43.71 29.55 68.60 2.03 45.74 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.31 -14.64 7.11 99.48 0.71 -13.93 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.22 -10.56 8.15 84.03 0.69 -9.87 16 8 H 0.08 3.59 6.91 -2.91 -0.02 3.57 16 9 N -0.72 -31.33 3.08 -322.94 -0.99 -32.33 16 10 C 0.19 6.69 2.86 44.99 0.13 6.82 16 11 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 12 C 0.13 4.14 5.22 86.38 0.45 4.59 16 13 N -0.70 -23.09 5.34 -466.20 -2.49 -25.57 16 14 C 0.55 18.56 7.76 86.71 0.67 19.23 16 15 O -0.58 -22.64 16.33 -4.00 -0.07 -22.71 16 16 C -0.15 -4.29 5.88 -20.05 -0.12 -4.41 16 17 C -0.07 -1.89 9.48 22.26 0.21 -1.68 16 18 C -0.11 -2.51 9.52 22.26 0.21 -2.29 16 19 C 0.02 0.33 5.88 -20.04 -0.12 0.21 16 20 C 0.00 -0.07 6.96 40.24 0.28 0.21 16 21 C -0.01 -0.20 11.28 83.95 0.95 0.75 16 22 N -0.54 -11.32 11.22 -199.41 -2.24 -13.56 16 23 C 0.21 2.62 13.02 180.24 2.35 4.97 16 24 N -0.55 -6.35 6.06 -187.61 -1.14 -7.48 16 25 H 0.44 1.94 8.20 -92.71 -0.76 1.18 16 26 C -0.13 -2.28 9.65 22.26 0.21 -2.06 16 27 C -0.06 -1.37 9.53 22.26 0.21 -1.16 16 28 C -0.17 -5.41 5.70 -10.80 -0.06 -5.47 16 29 C -0.17 -6.23 9.74 30.62 0.30 -5.94 16 30 C -0.17 -5.64 9.87 30.62 0.30 -5.34 16 31 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 32 H 0.37 18.35 7.80 -92.71 -0.72 17.63 16 33 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.41 13.42 6.15 -92.71 -0.57 12.85 16 36 H 0.13 3.47 6.38 -2.91 -0.02 3.45 16 37 H 0.15 2.76 7.04 -2.91 -0.02 2.74 16 38 H 0.18 3.32 7.30 -2.91 -0.02 3.30 16 39 H 0.25 0.62 8.06 -2.91 -0.02 0.60 16 40 H 0.15 1.63 7.27 -2.91 -0.02 1.61 16 41 H 0.14 3.21 7.64 -2.91 -0.02 3.18 16 42 H 0.12 3.11 8.11 -2.38 -0.02 3.09 16 43 H 0.08 3.50 6.68 -2.39 -0.02 3.48 16 44 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 45 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.08 3.02 6.22 -2.39 -0.01 3.00 16 Total: -1.00 -69.13 384.69 1.52 -67.61 By element: Atomic # 1 Polarization: 48.28 SS G_CDS: -1.00 Total: 47.29 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 7.13 Total: -4.34 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -6.57 Total: -133.59 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.07 Total: -22.71 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -69.13 1.52 -67.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480056134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.564 kcal (2) G-P(sol) polarization free energy of solvation -69.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds