Wall clock time and date at job start Sat Apr 11 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48497 * 109.47003 * 269.99900 * 3 2 1 5 5 H 1.48502 * 109.46972 * 29.99701 * 3 2 1 6 6 H 1.48498 * 109.47467 * 149.99698 * 3 2 1 7 7 C 1.37882 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99858 * 186.10120 * 7 2 1 9 9 C 1.50701 * 119.99702 * 6.37444 * 7 2 1 10 10 H 1.09001 * 109.47054 * 184.33970 * 9 7 2 11 11 C 1.50706 * 109.47122 * 304.33688 * 9 7 2 12 12 O 1.21284 * 119.99940 * 120.00025 * 11 9 7 13 13 N 1.34771 * 119.99840 * 299.99986 * 11 9 7 14 14 C 1.46924 * 120.63222 * 359.71931 * 13 11 9 15 15 C 1.52760 * 109.00987 * 233.58353 * 14 13 11 16 16 C 1.53046 * 109.38430 * 305.58990 * 15 14 13 17 17 C 1.53038 * 109.53682 * 61.24009 * 16 15 14 18 18 H 1.08999 * 109.49904 * 58.58195 * 17 16 15 19 19 C 1.50698 * 109.49809 * 178.68602 * 17 16 15 20 20 C 1.35354 * 126.91544 * 84.51900 * 19 17 16 21 21 N 1.33769 * 106.49258 * 179.90782 * 20 19 17 22 22 N 1.28632 * 108.89104 * 0.36837 * 21 20 19 23 23 N 1.28715 * 110.17788 * 359.76610 * 22 21 20 24 24 H 0.96994 * 125.86663 * 179.97438 * 23 22 21 25 25 C 1.46931 * 120.63110 * 180.02562 * 13 11 9 26 26 C 1.50697 * 109.46905 * 64.33390 * 9 7 2 27 27 C 1.38234 * 119.99903 * 193.08576 * 26 9 7 28 28 C 1.38241 * 119.99933 * 179.79115 * 27 26 9 29 29 C 1.38235 * 119.99884 * 0.46866 * 28 27 26 30 30 C 1.38236 * 119.99898 * 359.76235 * 29 28 27 31 31 C 1.38233 * 120.00182 * 13.36988 * 26 9 7 32 32 H 0.96997 * 119.99802 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.58786 * 353.42470 * 14 13 11 34 34 H 1.09009 * 109.58760 * 113.84797 * 14 13 11 35 35 H 1.09000 * 109.56388 * 185.55520 * 15 14 13 36 36 H 1.08998 * 109.38354 * 65.51799 * 15 14 13 37 37 H 1.08997 * 109.45863 * 301.21947 * 16 15 14 38 38 H 1.08998 * 109.45872 * 181.25868 * 16 15 14 39 39 H 1.07998 * 126.74609 * 0.04127 * 20 19 17 40 40 H 1.09001 * 109.58823 * 246.15985 * 25 13 11 41 41 H 1.09002 * 109.58141 * 6.43249 * 25 13 11 42 42 H 1.08001 * 120.00040 * 0.02562 * 27 26 9 43 43 H 1.08002 * 119.99702 * 180.25353 * 28 27 26 44 44 H 1.07994 * 119.99920 * 179.79232 * 29 28 27 45 45 H 1.07999 * 119.99638 * 179.97438 * 30 29 28 46 46 H 1.08002 * 120.00224 * 359.96939 * 31 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0800 -1.1966 0.0999 9 6 1.2581 -2.4952 -0.1438 10 1 1.9553 -3.3271 -0.0442 11 6 0.2045 -2.5916 0.9295 12 8 -0.9647 -2.6945 0.6240 13 7 0.5616 -2.5635 2.2287 14 6 1.9744 -2.4454 2.6144 15 6 2.3259 -3.5836 3.5707 16 6 1.3495 -3.5767 4.7492 17 6 -0.0748 -3.7980 4.2351 18 1 -0.1256 -4.7468 3.7011 19 6 -1.0315 -3.8232 5.3992 20 6 -1.6029 -2.7563 6.0052 21 7 -2.3765 -3.2435 6.9817 22 7 -2.2839 -4.5264 6.9855 23 7 -1.4875 -4.9169 6.0527 24 1 -1.2541 -5.8368 5.8529 25 6 -0.4540 -2.6570 3.2864 26 6 0.6011 -2.5497 -1.4989 27 6 -0.3553 -3.5116 -1.7651 28 6 -0.9611 -3.5589 -3.0068 29 6 -0.6034 -2.6504 -3.9854 30 6 0.3565 -1.6915 -3.7207 31 6 0.9591 -1.6416 -2.4777 32 1 -0.4850 0.8400 -0.0004 33 1 2.6023 -2.5094 1.7258 34 1 2.1386 -1.4897 3.1123 35 1 3.3427 -3.4493 3.9398 36 1 2.2529 -4.5347 3.0434 37 1 1.4056 -2.6163 5.2616 38 1 1.6130 -4.3744 5.4437 39 1 -1.4634 -1.7164 5.7491 40 1 -0.4923 -1.7190 3.8402 41 1 -1.4282 -2.8581 2.8407 42 1 -0.6321 -4.2237 -1.0018 43 1 -1.7114 -4.3078 -3.2135 44 1 -1.0743 -2.6894 -4.9565 45 1 0.6362 -0.9820 -4.4854 46 1 1.7094 -0.8926 -2.2711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001577706504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:08 Heat of formation + Delta-G solvation = 84.245704 kcal Electronic energy + Delta-G solvation = -30301.647177 eV Core-core repulsion = 26386.106663 eV Total energy + Delta-G solvation = -3915.540515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.36353 -39.55198 -38.15340 -36.59609 -33.94409 -33.51016 -32.90027 -31.61993 -30.90178 -29.75497 -29.22471 -27.35555 -25.09420 -23.96831 -23.56568 -22.97241 -21.74324 -21.33522 -20.87380 -19.90127 -18.58624 -17.91887 -17.07164 -16.10945 -15.81911 -15.46097 -15.13221 -14.90537 -14.67056 -14.51375 -14.09047 -13.97765 -13.76921 -13.71120 -13.37405 -12.78864 -12.63361 -12.41190 -12.27958 -12.09451 -11.75838 -11.66060 -11.50193 -11.38496 -11.00927 -10.87002 -10.83967 -10.77315 -10.70464 -10.61691 -10.48830 -10.21010 -10.10061 -9.74406 -9.44460 -9.17009 -8.78845 -8.32611 -7.77224 -7.71404 -7.47047 -6.20655 -4.33359 1.50062 2.46961 2.52690 2.53211 2.64162 3.16233 3.25412 3.26964 3.86310 4.07857 4.26645 4.43522 4.61998 4.83014 4.86853 4.93252 5.06548 5.17141 5.22706 5.27632 5.47915 5.55395 5.69187 5.79264 5.81331 5.91559 5.96563 5.99525 6.06157 6.08695 6.11033 6.21505 6.31702 6.43495 6.50736 6.60277 6.64506 6.71596 6.74921 6.80468 7.06329 7.13363 7.44003 7.49569 7.57477 7.62650 7.71246 8.08081 8.19286 8.39370 8.46634 8.69601 9.31273 9.61013 10.81316 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012912 B = 0.003800 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.991375 B = 7367.324874 C = 8409.070192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.078 3.922 3 Si 0.883 3.117 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.271 1.271 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.058 3.942 10 H 0.056 0.944 11 C 0.559 3.441 12 O -0.546 6.546 13 N -0.611 5.611 14 C 0.119 3.881 15 C -0.138 4.138 16 C -0.106 4.106 17 C -0.031 4.031 18 H 0.085 0.915 19 C 0.010 3.990 20 C -0.045 4.045 21 N -0.266 5.266 22 N -0.091 5.091 23 N -0.392 5.392 24 H 0.445 0.555 25 C 0.131 3.869 26 C -0.017 4.017 27 C -0.100 4.100 28 C -0.143 4.143 29 C -0.144 4.144 30 C -0.146 4.146 31 C -0.073 4.073 32 H 0.266 0.734 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.191 0.809 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 -8.019 5.484 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.130 4.130 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.037 3.963 10 H 0.074 0.926 11 C 0.351 3.649 12 O -0.423 6.423 13 N -0.345 5.345 14 C -0.004 4.004 15 C -0.177 4.177 16 C -0.145 4.145 17 C -0.053 4.053 18 H 0.103 0.897 19 C -0.125 4.125 20 C -0.202 4.202 21 N -0.133 5.133 22 N -0.071 5.071 23 N -0.112 5.112 24 H 0.290 0.710 25 C 0.006 3.994 26 C -0.018 4.018 27 C -0.118 4.118 28 C -0.161 4.161 29 C -0.163 4.163 30 C -0.165 4.165 31 C -0.091 4.091 32 H 0.076 0.924 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.208 0.792 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.768 -8.234 6.502 10.851 hybrid contribution 1.037 0.964 -0.878 1.666 sum 3.805 -7.270 5.625 9.949 Atomic orbital electron populations 1.70008 1.05494 1.27123 1.44644 1.25003 0.94746 0.99085 0.94162 0.86729 0.80017 0.83756 0.78520 1.20332 1.21253 1.19596 1.20638 0.93308 0.88821 1.55002 0.91341 1.17888 0.92467 0.98157 0.87768 0.92602 1.21021 0.90231 0.71550 0.82120 1.90531 1.20519 1.49872 1.81334 1.47727 1.05954 1.75686 1.05180 1.21605 0.83107 0.96190 0.99512 1.21984 0.98620 1.00569 0.96499 1.21564 0.92684 1.02259 0.97962 1.20180 0.92225 1.02085 0.90803 0.89669 1.22284 1.03046 0.86998 1.00164 1.23431 0.99645 1.00791 0.96313 1.75073 1.18842 1.00354 1.19075 1.78247 1.11113 1.08181 1.09526 1.45080 1.32089 1.10716 1.23321 0.70951 1.21188 0.94223 0.95377 0.88607 1.19864 0.94267 0.92409 0.95274 1.20980 0.96435 0.99159 0.95200 1.20845 1.00897 0.99933 0.94431 1.20791 0.99598 0.97431 0.98432 1.21009 0.98811 0.99096 0.97545 1.21188 0.99090 0.97421 0.91398 0.92367 0.87345 0.92511 0.90877 0.91840 0.91130 0.92462 0.79226 0.92176 0.89213 0.87485 0.88057 0.88137 0.87964 0.85368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.90 11.11 55.43 0.62 -21.28 16 2 C 0.08 1.86 3.90 -17.82 -0.07 1.79 16 3 Si 0.88 18.84 29.54 -169.99 -5.02 13.82 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.54 -12.05 4.99 -34.44 -0.17 -12.23 16 8 H 0.07 1.47 7.66 -52.49 -0.40 1.07 16 9 C 0.06 1.27 1.99 -94.07 -0.19 1.08 16 10 H 0.06 1.10 7.68 -51.93 -0.40 0.71 16 11 C 0.56 12.24 5.22 -10.99 -0.06 12.18 16 12 O -0.55 -13.75 13.28 5.55 0.07 -13.67 16 13 N -0.61 -10.93 2.98 -173.05 -0.52 -11.45 16 14 C 0.12 1.80 5.56 -3.93 -0.02 1.77 16 15 C -0.14 -1.52 6.06 -26.83 -0.16 -1.68 16 16 C -0.11 -1.09 5.15 -26.69 -0.14 -1.23 16 17 C -0.03 -0.36 2.80 -91.67 -0.26 -0.61 16 18 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 19 C 0.01 0.11 6.22 -82.08 -0.51 -0.40 16 20 C -0.04 -0.59 11.23 -17.74 -0.20 -0.79 16 21 N -0.27 -4.00 12.41 30.23 0.38 -3.63 16 22 N -0.09 -1.25 13.38 60.35 0.81 -0.44 16 23 N -0.39 -4.16 6.98 33.54 0.23 -3.93 16 24 H 0.45 3.02 8.96 -190.41 -1.71 1.32 16 25 C 0.13 2.04 5.43 -3.73 -0.02 2.02 16 26 C -0.02 -0.39 4.63 -104.63 -0.48 -0.87 16 27 C -0.10 -2.15 8.21 -39.58 -0.32 -2.48 16 28 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 29 C -0.14 -2.75 10.05 -39.58 -0.40 -3.15 16 30 C -0.15 -2.94 10.05 -39.58 -0.40 -3.34 16 31 C -0.07 -1.63 8.46 -39.58 -0.33 -1.96 16 32 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 33 H 0.11 1.76 4.87 -51.93 -0.25 1.51 16 34 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.19 2.19 7.37 -52.49 -0.39 1.80 16 40 H 0.06 0.92 7.14 -51.93 -0.37 0.55 16 41 H 0.09 1.63 7.00 -51.93 -0.36 1.26 16 42 H 0.11 2.29 6.99 -52.49 -0.37 1.92 16 43 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.13 2.93 6.05 -52.49 -0.32 2.61 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -30.24 366.02 -9.55 -39.79 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.51 Total: 8.38 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -4.13 Total: -13.11 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 1.52 Total: -40.72 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.07 Total: -13.67 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.24 -9.55 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.040 kcal (2) G-P(sol) polarization free energy of solvation -30.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds