Wall clock time and date at job start Sat Apr 11 2020 06:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48497 * 109.47003 * 269.99900 * 3 2 1 5 5 H 1.48502 * 109.46972 * 29.99701 * 3 2 1 6 6 H 1.48498 * 109.47467 * 149.99698 * 3 2 1 7 7 C 1.37882 * 120.00347 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99858 * 186.10120 * 7 2 1 9 9 C 1.50701 * 119.99702 * 6.37444 * 7 2 1 10 10 H 1.09001 * 109.47054 * 184.33970 * 9 7 2 11 11 C 1.50706 * 109.47122 * 304.33688 * 9 7 2 12 12 O 1.21284 * 119.99940 * 120.00025 * 11 9 7 13 13 N 1.34771 * 119.99840 * 299.99986 * 11 9 7 14 14 C 1.46924 * 120.63222 * 359.71931 * 13 11 9 15 15 C 1.52760 * 109.00987 * 233.58353 * 14 13 11 16 16 C 1.53046 * 109.38430 * 305.58990 * 15 14 13 17 17 C 1.53038 * 109.53682 * 61.24009 * 16 15 14 18 18 H 1.08999 * 109.49904 * 58.58195 * 17 16 15 19 19 C 1.50698 * 109.49809 * 178.68602 * 17 16 15 20 20 C 1.35354 * 126.91544 * 84.51900 * 19 17 16 21 21 N 1.33769 * 106.49258 * 179.90782 * 20 19 17 22 22 N 1.28632 * 108.89104 * 0.36837 * 21 20 19 23 23 N 1.28715 * 110.17788 * 359.76610 * 22 21 20 24 24 H 0.96994 * 125.86663 * 179.97438 * 23 22 21 25 25 C 1.46931 * 120.63110 * 180.02562 * 13 11 9 26 26 C 1.50697 * 109.46905 * 64.33390 * 9 7 2 27 27 C 1.38234 * 119.99903 * 193.08576 * 26 9 7 28 28 C 1.38241 * 119.99933 * 179.79115 * 27 26 9 29 29 C 1.38235 * 119.99884 * 0.46866 * 28 27 26 30 30 C 1.38236 * 119.99898 * 359.76235 * 29 28 27 31 31 C 1.38233 * 120.00182 * 13.36988 * 26 9 7 32 32 H 0.96997 * 119.99802 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.58786 * 353.42470 * 14 13 11 34 34 H 1.09009 * 109.58760 * 113.84797 * 14 13 11 35 35 H 1.09000 * 109.56388 * 185.55520 * 15 14 13 36 36 H 1.08998 * 109.38354 * 65.51799 * 15 14 13 37 37 H 1.08997 * 109.45863 * 301.21947 * 16 15 14 38 38 H 1.08998 * 109.45872 * 181.25868 * 16 15 14 39 39 H 1.07998 * 126.74609 * 0.04127 * 20 19 17 40 40 H 1.09001 * 109.58823 * 246.15985 * 25 13 11 41 41 H 1.09002 * 109.58141 * 6.43249 * 25 13 11 42 42 H 1.08001 * 120.00040 * 0.02562 * 27 26 9 43 43 H 1.08002 * 119.99702 * 180.25353 * 28 27 26 44 44 H 1.07994 * 119.99920 * 179.79232 * 29 28 27 45 45 H 1.07999 * 119.99638 * 179.97438 * 30 29 28 46 46 H 1.08002 * 120.00224 * 359.96939 * 31 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0800 -1.1966 0.0999 9 6 1.2581 -2.4952 -0.1438 10 1 1.9553 -3.3271 -0.0442 11 6 0.2045 -2.5916 0.9295 12 8 -0.9647 -2.6945 0.6240 13 7 0.5616 -2.5635 2.2287 14 6 1.9744 -2.4454 2.6144 15 6 2.3259 -3.5836 3.5707 16 6 1.3495 -3.5767 4.7492 17 6 -0.0748 -3.7980 4.2351 18 1 -0.1256 -4.7468 3.7011 19 6 -1.0315 -3.8232 5.3992 20 6 -1.6029 -2.7563 6.0052 21 7 -2.3765 -3.2435 6.9817 22 7 -2.2839 -4.5264 6.9855 23 7 -1.4875 -4.9169 6.0527 24 1 -1.2541 -5.8368 5.8529 25 6 -0.4540 -2.6570 3.2864 26 6 0.6011 -2.5497 -1.4989 27 6 -0.3553 -3.5116 -1.7651 28 6 -0.9611 -3.5589 -3.0068 29 6 -0.6034 -2.6504 -3.9854 30 6 0.3565 -1.6915 -3.7207 31 6 0.9591 -1.6416 -2.4777 32 1 -0.4850 0.8400 -0.0004 33 1 2.6023 -2.5094 1.7258 34 1 2.1386 -1.4897 3.1123 35 1 3.3427 -3.4493 3.9398 36 1 2.2529 -4.5347 3.0434 37 1 1.4056 -2.6163 5.2616 38 1 1.6130 -4.3744 5.4437 39 1 -1.4634 -1.7164 5.7491 40 1 -0.4923 -1.7190 3.8402 41 1 -1.4282 -2.8581 2.8407 42 1 -0.6321 -4.2237 -1.0018 43 1 -1.7114 -4.3078 -3.2135 44 1 -1.0743 -2.6894 -4.9565 45 1 0.6362 -0.9820 -4.4854 46 1 1.7094 -0.8926 -2.2711 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577706504.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:07 Heat of formation + Delta-G solvation = 66.593875 kcal Electronic energy + Delta-G solvation = -30302.412618 eV Core-core repulsion = 26386.106663 eV Total energy + Delta-G solvation = -3916.305955 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.36301 -41.04308 -39.59891 -38.03887 -35.60359 -34.68173 -34.06376 -32.79384 -32.56656 -31.36125 -30.37733 -28.92720 -26.53579 -25.33469 -24.86100 -24.01218 -22.96210 -22.76536 -22.28120 -21.21214 -19.74958 -19.21791 -18.68127 -17.32897 -17.14800 -17.06384 -16.74639 -16.37007 -15.89905 -15.66143 -15.41781 -15.35242 -15.07922 -14.91503 -14.73759 -14.26312 -14.09029 -13.89297 -13.73543 -13.45585 -13.32053 -13.01283 -12.78113 -12.74223 -12.55101 -12.49381 -12.24637 -11.92499 -11.79666 -11.75508 -11.70887 -11.53717 -11.44524 -11.34878 -11.13376 -10.61566 -10.18912 -10.04434 -9.38595 -9.16092 -9.08716 -8.04322 -6.18091 0.52456 0.87429 0.91920 1.44003 1.48247 1.50158 1.55046 1.77114 2.35835 2.47348 2.66118 3.23878 3.33728 3.43157 3.59779 3.84513 3.89312 4.19818 4.22612 4.28286 4.33457 4.35445 4.42876 4.48603 4.52208 4.55777 4.70407 4.75731 4.88720 4.95590 5.01392 5.03450 5.10572 5.11825 5.15074 5.17835 5.23141 5.33938 5.46340 5.53570 5.54910 5.75221 5.88957 5.93896 5.95608 5.99421 6.11634 6.42776 6.53180 6.78838 7.04147 7.37930 7.47938 7.97927 8.96403 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012912 B = 0.003800 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.991375 B = 7367.324874 C = 8409.070192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.045 3.955 3 Si 0.930 3.070 4 H -0.281 1.281 5 H -0.301 1.301 6 H -0.256 1.256 7 C -0.523 4.523 8 H 0.077 0.923 9 C 0.051 3.949 10 H 0.070 0.930 11 C 0.556 3.444 12 O -0.588 6.588 13 N -0.610 5.610 14 C 0.113 3.887 15 C -0.127 4.127 16 C -0.101 4.101 17 C -0.014 4.014 18 H 0.095 0.905 19 C 0.019 3.981 20 C -0.057 4.057 21 N -0.298 5.298 22 N -0.105 5.105 23 N -0.371 5.371 24 H 0.463 0.537 25 C 0.130 3.870 26 C -0.038 4.038 27 C -0.116 4.116 28 C -0.146 4.146 29 C -0.143 4.143 30 C -0.152 4.152 31 C -0.096 4.096 32 H 0.254 0.746 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.198 0.802 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.100 0.900 43 H 0.128 0.872 44 H 0.137 0.863 45 H 0.126 0.874 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.117 -9.263 5.681 12.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.159 4.159 3 Si 0.757 3.243 4 H -0.207 1.207 5 H -0.228 1.228 6 H -0.179 1.179 7 C -0.560 4.560 8 H 0.095 0.905 9 C 0.030 3.970 10 H 0.087 0.913 11 C 0.347 3.653 12 O -0.468 6.468 13 N -0.343 5.343 14 C -0.009 4.009 15 C -0.165 4.165 16 C -0.139 4.139 17 C -0.035 4.035 18 H 0.114 0.886 19 C -0.116 4.116 20 C -0.214 4.214 21 N -0.164 5.164 22 N -0.085 5.085 23 N -0.094 5.094 24 H 0.312 0.688 25 C 0.006 3.994 26 C -0.038 4.038 27 C -0.135 4.135 28 C -0.164 4.164 29 C -0.161 4.161 30 C -0.170 4.170 31 C -0.114 4.114 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.215 0.785 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.146 0.854 44 H 0.154 0.846 45 H 0.144 0.856 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.355 -9.513 6.742 12.446 hybrid contribution 0.584 1.311 -0.989 1.743 sum 4.939 -8.202 5.752 11.170 Atomic orbital electron populations 1.70181 1.06909 1.26554 1.47441 1.25470 0.94879 1.01317 0.94232 0.85982 0.79475 0.80812 0.78066 1.20710 1.22762 1.17931 1.20837 0.93559 0.88951 1.52672 0.90494 1.17988 0.92782 0.98310 0.87928 0.91267 1.21000 0.89523 0.71335 0.83422 1.90495 1.21959 1.52067 1.82316 1.47747 1.07674 1.74348 1.04523 1.21744 0.81124 0.98005 1.00033 1.21894 1.00149 0.98753 0.95671 1.21564 0.90956 1.03429 0.98001 1.19974 0.93178 1.00598 0.89793 0.88638 1.22160 1.02709 0.86921 0.99828 1.23688 0.99723 1.01739 0.96268 1.75052 1.20047 1.01028 1.20296 1.78184 1.11867 1.07900 1.10508 1.45046 1.30704 1.11488 1.22137 0.68805 1.21206 0.92426 0.97235 0.88514 1.20021 0.95096 0.93089 0.95641 1.21048 0.96983 0.99321 0.96106 1.21210 1.00886 1.00567 0.93768 1.21179 0.98835 0.96294 0.99745 1.21327 0.98621 0.99741 0.97270 1.21195 0.99891 0.97611 0.92660 0.93697 0.88650 0.93004 0.88227 0.91224 0.91103 0.89614 0.78523 0.92146 0.92294 0.88171 0.85391 0.84564 0.85644 0.86742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.04 11.11 21.45 0.24 -46.80 16 2 C 0.05 2.17 3.90 84.66 0.33 2.50 16 3 Si 0.93 38.91 29.54 68.60 2.03 40.94 16 4 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.30 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 7 C -0.52 -23.37 4.99 25.60 0.13 -23.24 16 8 H 0.08 3.25 7.66 -2.91 -0.02 3.22 16 9 C 0.05 2.24 1.99 -13.03 -0.03 2.22 16 10 H 0.07 2.75 7.68 -2.39 -0.02 2.73 16 11 C 0.56 24.84 5.22 87.66 0.46 25.30 16 12 O -0.59 -30.73 13.28 -3.04 -0.04 -30.77 16 13 N -0.61 -21.84 2.98 -819.79 -2.44 -24.29 16 14 C 0.11 3.27 5.56 86.22 0.48 3.75 16 15 C -0.13 -2.38 6.06 30.53 0.19 -2.20 16 16 C -0.10 -1.73 5.15 30.62 0.16 -1.58 16 17 C -0.01 -0.29 2.80 -11.48 -0.03 -0.32 16 18 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 19 C 0.02 0.42 6.22 41.35 0.26 0.68 16 20 C -0.06 -1.45 11.23 83.73 0.94 -0.51 16 21 N -0.30 -8.80 12.41 -58.26 -0.72 -9.52 16 22 N -0.10 -2.76 13.38 37.02 0.50 -2.26 16 23 N -0.37 -7.14 6.98 -47.79 -0.33 -7.48 16 24 H 0.46 5.06 8.96 -219.97 -1.97 3.09 16 25 C 0.13 4.08 5.43 86.35 0.47 4.55 16 26 C -0.04 -1.72 4.63 -19.87 -0.09 -1.81 16 27 C -0.12 -5.09 8.21 22.27 0.18 -4.90 16 28 C -0.15 -5.61 10.05 22.27 0.22 -5.38 16 29 C -0.14 -5.15 10.05 22.27 0.22 -4.93 16 30 C -0.15 -5.93 10.05 22.27 0.22 -5.71 16 31 C -0.10 -4.28 8.46 22.27 0.19 -4.09 16 32 H 0.25 13.77 8.31 -92.71 -0.77 12.99 16 33 H 0.10 3.00 4.87 -2.39 -0.01 2.99 16 34 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.20 4.52 7.37 -2.91 -0.02 4.50 16 40 H 0.06 1.86 7.14 -2.39 -0.02 1.85 16 41 H 0.06 2.22 7.00 -2.39 -0.02 2.20 16 42 H 0.10 4.41 6.99 -2.91 -0.02 4.39 16 43 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 44 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 45 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 46 H 0.11 5.32 6.05 -2.91 -0.02 5.30 16 Total: -1.00 -67.51 366.02 2.56 -64.95 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.95 Total: 30.93 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.30 Total: -15.70 kcal Atomic # 7 Polarization: -87.58 SS G_CDS: -2.76 Total: -90.34 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.04 Total: -30.77 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -67.51 2.56 -64.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577706504.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.539 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds