Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 N 1.39907 * 125.80302 * 90.02851 * 10 9 7 12 12 C 1.30462 * 109.21675 * 179.97438 * 11 10 9 13 13 C 1.41088 * 108.30109 * 359.97438 * 12 11 10 14 14 C 1.47174 * 126.47877 * 180.02562 * 13 12 11 15 15 O 1.21633 * 120.00234 * 179.97438 * 14 13 12 16 16 N 1.34782 * 120.00345 * 359.96465 * 14 13 12 17 17 C 1.46491 * 120.00242 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47097 * 180.02562 * 17 16 14 19 19 H 1.09005 * 112.95677 * 306.64444 * 18 17 16 20 20 C 1.53939 * 113.75813 * 175.00336 * 18 17 16 21 21 C 1.53933 * 86.34214 * 221.96048 * 20 18 17 22 22 N 1.47956 * 113.76261 * 78.44331 * 18 17 16 23 23 C 1.35174 * 125.80627 * 269.71448 * 10 9 7 24 24 C 1.47733 * 126.47426 * 0.03723 * 23 10 9 25 25 C 1.39617 * 120.14733 * 314.71688 * 24 23 10 26 26 C 1.37952 * 119.84656 * 179.76605 * 25 24 23 27 27 C 1.38362 * 120.14900 * 0.53737 * 26 25 24 28 28 C 1.38366 * 120.30067 * 359.70082 * 27 26 25 29 29 C 1.37946 * 120.14808 * 0.03639 * 28 27 26 30 30 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 32 32 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 33 33 H 1.08006 * 125.84905 * 180.02562 * 12 11 10 34 34 H 0.97005 * 119.99226 * 0.02562 * 16 14 13 35 35 H 1.09002 * 109.47179 * 300.00643 * 17 16 14 36 36 H 1.09006 * 109.47157 * 60.00721 * 17 16 14 37 37 H 1.08995 * 113.73612 * 336.31840 * 20 18 17 38 38 H 1.09001 * 113.73312 * 107.49479 * 20 18 17 39 39 H 1.08992 * 113.76101 * 138.03555 * 21 20 18 40 40 H 1.08996 * 113.75818 * 269.40781 * 21 20 18 41 41 H 1.00895 * 110.99617 * 251.90296 * 22 18 17 42 42 H 1.07997 * 120.07690 * 0.03263 * 25 24 23 43 43 H 1.08002 * 119.92417 * 180.25654 * 26 25 24 44 44 H 1.08000 * 119.85119 * 179.71479 * 27 26 25 45 45 H 1.08000 * 119.92349 * 180.02562 * 28 27 26 46 46 H 1.07999 * 120.07234 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 7 2.7348 -4.2350 1.1352 12 6 3.5472 -5.1855 0.7628 13 6 3.5744 -5.2177 -0.6474 14 6 4.3594 -6.1373 -1.4866 15 8 4.2933 -6.0609 -2.6988 16 7 5.1518 -7.0639 -0.9121 17 6 5.9336 -7.9788 -1.7474 18 6 6.7400 -8.9227 -0.8532 19 1 7.3489 -8.3957 -0.1185 20 6 7.5066 -10.0086 -1.6296 21 6 7.0532 -10.9796 -0.5245 22 7 5.9426 -10.0318 -0.2847 23 6 2.7132 -4.2171 -1.0957 24 6 2.4162 -3.8795 -2.5029 25 6 1.0983 -3.6604 -2.9084 26 6 0.8285 -3.3407 -4.2229 27 6 1.8594 -3.2479 -5.1412 28 6 3.1672 -3.4686 -4.7472 29 6 3.4516 -3.7838 -3.4346 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5570 -0.8897 32 1 0.6243 -2.5567 0.8903 33 1 4.1029 -5.8367 1.4213 34 1 5.2043 -7.1249 0.0546 35 1 5.2606 -8.5613 -2.3765 36 1 6.6136 -7.4047 -2.3769 37 1 7.0823 -10.2298 -2.6090 38 1 8.5843 -9.8481 -1.6599 39 1 6.7289 -11.9504 -0.8989 40 1 7.7531 -11.0554 0.3076 41 1 5.7890 -9.8972 0.7034 42 1 0.2923 -3.7368 -2.1936 43 1 -0.1901 -3.1669 -4.5370 44 1 1.6422 -3.0018 -6.1701 45 1 3.9672 -3.3942 -5.4689 46 1 4.4729 -3.9555 -3.1283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = 94.674666 kcal Electronic energy + Delta-G solvation = -28964.735506 eV Core-core repulsion = 25049.647226 eV Total energy + Delta-G solvation = -3915.088281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.85309 -39.90133 -38.47251 -38.28136 -34.35941 -33.85135 -32.14044 -31.40338 -30.39387 -29.33429 -28.18169 -27.74420 -27.07953 -24.13346 -23.16043 -22.58995 -22.08965 -21.54854 -20.15565 -19.62903 -19.08616 -17.50605 -17.44110 -16.74805 -16.23946 -15.79923 -15.48209 -15.20781 -14.83571 -14.73157 -14.58070 -14.14220 -13.93984 -13.76093 -13.52993 -13.16909 -13.04549 -12.67996 -12.47491 -12.34344 -12.21601 -12.11220 -12.01225 -11.68972 -11.35444 -11.23023 -11.12106 -10.95903 -10.89171 -10.57335 -10.34858 -10.27725 -9.92650 -9.40605 -9.28580 -9.09981 -8.87601 -8.67945 -8.34731 -8.15092 -7.75211 -6.30944 -4.37663 1.40333 1.96201 2.39046 2.77221 3.13073 3.20231 3.26240 3.31420 3.45977 3.73303 3.92946 4.17080 4.26650 4.36866 4.47120 4.77410 4.86368 4.91127 5.02346 5.05547 5.16110 5.30231 5.36772 5.37904 5.39168 5.48578 5.51761 5.55497 5.68977 5.73616 5.81425 5.91936 5.94691 6.01500 6.22867 6.37390 6.52141 6.59624 6.70974 6.85482 6.86588 6.93435 6.95893 7.03897 7.12376 7.42462 7.55962 7.74198 7.77944 7.79687 8.32281 8.64627 8.66813 9.28389 10.77508 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.003046 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.500525 B = 9190.685565 C =10402.783800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.069 3.931 3 Si 0.906 3.094 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.245 3.755 10 N -0.305 5.305 11 N -0.290 5.290 12 C 0.057 3.943 13 C -0.315 4.315 14 C 0.599 3.401 15 O -0.546 6.546 16 N -0.732 5.732 17 C 0.144 3.856 18 C 0.020 3.980 19 H 0.082 0.918 20 C -0.136 4.136 21 C 0.003 3.997 22 N -0.628 5.628 23 C 0.197 3.803 24 C -0.031 4.031 25 C -0.086 4.086 26 C -0.129 4.129 27 C -0.111 4.111 28 C -0.133 4.133 29 C -0.039 4.039 30 H 0.269 0.731 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.177 0.823 34 H 0.395 0.605 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.319 0.681 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.506 -16.470 -4.093 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.135 4.135 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.129 3.871 10 N -0.081 5.081 11 N -0.110 5.110 12 C -0.129 4.129 13 C -0.331 4.331 14 C 0.389 3.611 15 O -0.424 6.424 16 N -0.383 5.383 17 C 0.020 3.980 18 C -0.092 4.092 19 H 0.100 0.900 20 C -0.175 4.175 21 C -0.127 4.127 22 N -0.253 5.253 23 C 0.061 3.939 24 C -0.032 4.032 25 C -0.105 4.105 26 C -0.147 4.147 27 C -0.130 4.130 28 C -0.151 4.151 29 C -0.058 4.058 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.194 0.806 34 H 0.228 0.772 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.137 0.863 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.019 -15.735 -4.448 19.177 hybrid contribution 1.489 0.686 0.795 1.823 sum 11.508 -15.049 -3.653 19.294 Atomic orbital electron populations 1.69901 1.06005 1.27809 1.48970 1.24882 0.94984 0.99402 0.94222 0.86348 0.79773 0.82113 0.78480 1.20183 1.20782 1.19632 1.21197 0.93691 0.89336 1.53231 0.91739 1.20059 0.86270 0.80380 1.00437 1.49633 1.32269 1.24859 1.01336 1.77114 1.14378 1.10233 1.09273 1.23642 0.98506 0.97441 0.93283 1.19851 1.12679 1.07258 0.93280 1.17221 0.77845 0.79013 0.87022 1.90763 1.66010 1.71678 1.13987 1.45637 1.47212 1.35662 1.09826 1.21143 0.94053 0.90067 0.92720 1.23530 0.94453 0.93345 0.97828 0.90038 1.23348 1.00110 0.94642 0.99375 1.23593 0.93058 0.98050 0.98020 1.66958 1.32918 1.05045 1.20418 1.19769 0.93552 0.92189 0.88419 1.17843 0.93875 1.02440 0.89076 1.21235 0.95466 0.97518 0.96277 1.20901 0.99126 1.01540 0.93134 1.21140 0.93030 0.99681 0.99103 1.20927 0.96472 1.01865 0.95869 1.21049 0.98712 0.93871 0.92185 0.92150 0.91936 0.92450 0.80646 0.77167 0.90786 0.91192 0.88712 0.90786 0.89336 0.91642 0.86814 0.85966 0.86133 0.86537 0.86339 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -14.71 9.39 -34.44 -0.32 -15.03 16 8 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 9 C 0.25 6.20 5.96 -5.19 -0.03 6.17 16 10 N -0.30 -7.01 3.59 -58.19 -0.21 -7.22 16 11 N -0.29 -6.21 12.48 30.82 0.38 -5.82 16 12 C 0.06 0.99 11.48 -17.05 -0.20 0.79 16 13 C -0.32 -5.86 6.13 -104.75 -0.64 -6.50 16 14 C 0.60 10.03 7.69 -12.63 -0.10 9.93 16 15 O -0.55 -10.42 12.92 5.25 0.07 -10.35 16 16 N -0.73 -8.96 5.55 -61.46 -0.34 -9.30 16 17 C 0.14 1.53 5.71 -4.05 -0.02 1.50 16 18 C 0.02 0.15 4.27 -66.65 -0.28 -0.14 16 19 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 20 C -0.14 -0.86 7.85 -25.80 -0.20 -1.07 16 21 C 0.00 0.02 8.90 -2.77 -0.02 -0.01 16 22 N -0.63 -4.99 8.33 -110.31 -0.92 -5.91 16 23 C 0.20 4.19 6.50 -82.07 -0.53 3.66 16 24 C -0.03 -0.62 5.26 -104.99 -0.55 -1.18 16 25 C -0.09 -1.67 8.50 -39.17 -0.33 -2.00 16 26 C -0.13 -2.17 10.03 -39.64 -0.40 -2.57 16 27 C -0.11 -1.73 10.04 -39.49 -0.40 -2.13 16 28 C -0.13 -2.19 10.03 -39.64 -0.40 -2.59 16 29 C -0.04 -0.74 7.54 -39.18 -0.30 -1.03 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.06 1.57 5.08 -51.93 -0.26 1.31 16 32 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 33 H 0.18 2.13 7.49 -52.48 -0.39 1.74 16 34 H 0.39 3.92 7.42 -40.82 -0.30 3.61 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.32 2.15 8.91 -39.29 -0.35 1.80 16 42 H 0.12 2.36 6.56 -52.49 -0.34 2.02 16 43 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 46 H 0.13 2.37 6.75 -52.49 -0.35 2.01 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -32.17 385.36 -10.52 -42.69 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.20 Total: 8.37 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -4.83 Total: -10.40 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.35 Total: -52.28 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.17 -10.52 -42.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.368 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds