Wall clock time and date at job start Sat Apr 11 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48500 * 109.46922 * 269.99928 * 3 2 1 5 5 H 1.48500 * 109.47411 * 29.99750 * 3 2 1 6 6 H 1.48494 * 109.47378 * 149.99945 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 N 1.39907 * 125.80302 * 90.02851 * 10 9 7 12 12 C 1.30462 * 109.21675 * 179.97438 * 11 10 9 13 13 C 1.41088 * 108.30109 * 359.97438 * 12 11 10 14 14 C 1.47174 * 126.47877 * 180.02562 * 13 12 11 15 15 O 1.21633 * 120.00234 * 179.97438 * 14 13 12 16 16 N 1.34782 * 120.00345 * 359.96465 * 14 13 12 17 17 C 1.46491 * 120.00242 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47097 * 180.02562 * 17 16 14 19 19 H 1.09005 * 112.95677 * 306.64444 * 18 17 16 20 20 C 1.53939 * 113.75813 * 175.00336 * 18 17 16 21 21 C 1.53933 * 86.34214 * 221.96048 * 20 18 17 22 22 N 1.47956 * 113.76261 * 78.44331 * 18 17 16 23 23 C 1.35174 * 125.80627 * 269.71448 * 10 9 7 24 24 C 1.47733 * 126.47426 * 0.03723 * 23 10 9 25 25 C 1.39617 * 120.14733 * 314.71688 * 24 23 10 26 26 C 1.37952 * 119.84656 * 179.76605 * 25 24 23 27 27 C 1.38362 * 120.14900 * 0.53737 * 26 25 24 28 28 C 1.38366 * 120.30067 * 359.70082 * 27 26 25 29 29 C 1.37946 * 120.14808 * 0.03639 * 28 27 26 30 30 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 32 32 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 33 33 H 1.08006 * 125.84905 * 180.02562 * 12 11 10 34 34 H 0.97005 * 119.99226 * 0.02562 * 16 14 13 35 35 H 1.09002 * 109.47179 * 300.00643 * 17 16 14 36 36 H 1.09006 * 109.47157 * 60.00721 * 17 16 14 37 37 H 1.08995 * 113.73612 * 336.31840 * 20 18 17 38 38 H 1.09001 * 113.73312 * 107.49479 * 20 18 17 39 39 H 1.08992 * 113.76101 * 138.03555 * 21 20 18 40 40 H 1.08996 * 113.75818 * 269.40781 * 21 20 18 41 41 H 1.00895 * 110.99617 * 251.90296 * 22 18 17 42 42 H 1.07997 * 120.07690 * 0.03263 * 25 24 23 43 43 H 1.08002 * 119.92417 * 180.25654 * 26 25 24 44 44 H 1.08000 * 119.85119 * 179.71479 * 27 26 25 45 45 H 1.08000 * 119.92349 * 180.02562 * 28 27 26 46 46 H 1.07999 * 120.07234 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5465 1.4405 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 7 2.7348 -4.2350 1.1352 12 6 3.5472 -5.1855 0.7628 13 6 3.5744 -5.2177 -0.6474 14 6 4.3594 -6.1373 -1.4866 15 8 4.2933 -6.0609 -2.6988 16 7 5.1518 -7.0639 -0.9121 17 6 5.9336 -7.9788 -1.7474 18 6 6.7400 -8.9227 -0.8532 19 1 7.3489 -8.3957 -0.1185 20 6 7.5066 -10.0086 -1.6296 21 6 7.0532 -10.9796 -0.5245 22 7 5.9426 -10.0318 -0.2847 23 6 2.7132 -4.2171 -1.0957 24 6 2.4162 -3.8795 -2.5029 25 6 1.0983 -3.6604 -2.9084 26 6 0.8285 -3.3407 -4.2229 27 6 1.8594 -3.2479 -5.1412 28 6 3.1672 -3.4686 -4.7472 29 6 3.4516 -3.7838 -3.4346 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5570 -0.8897 32 1 0.6243 -2.5567 0.8903 33 1 4.1029 -5.8367 1.4213 34 1 5.2043 -7.1249 0.0546 35 1 5.2606 -8.5613 -2.3765 36 1 6.6136 -7.4047 -2.3769 37 1 7.0823 -10.2298 -2.6090 38 1 8.5843 -9.8481 -1.6599 39 1 6.7289 -11.9504 -0.8989 40 1 7.7531 -11.0554 0.3076 41 1 5.7890 -9.8972 0.7034 42 1 0.2923 -3.7368 -2.1936 43 1 -0.1901 -3.1669 -4.5370 44 1 1.6422 -3.0018 -6.1701 45 1 3.9672 -3.3942 -5.4689 46 1 4.4729 -3.9555 -3.1283 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052796.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:24 Heat of formation + Delta-G solvation = 71.942458 kcal Electronic energy + Delta-G solvation = -28965.721249 eV Core-core repulsion = 25049.647226 eV Total energy + Delta-G solvation = -3916.074023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.36761 -40.63334 -39.69938 -39.59364 -35.82668 -35.45688 -33.82921 -32.96595 -31.76289 -30.51984 -29.53445 -28.84718 -28.19724 -25.67677 -24.47325 -23.81744 -23.52113 -22.85499 -21.24304 -20.89520 -20.21870 -19.02119 -18.65262 -18.00399 -17.57296 -17.10582 -16.75974 -16.56743 -16.42295 -15.83361 -15.75217 -15.49519 -15.23228 -15.02258 -14.85055 -14.52847 -14.50573 -14.16345 -13.94252 -13.59187 -13.50073 -13.30127 -13.03898 -12.92216 -12.75067 -12.63627 -12.38931 -12.29446 -11.99096 -11.89486 -11.86782 -11.82458 -11.73940 -10.78915 -10.74725 -10.65996 -10.05206 -9.83223 -9.75599 -9.69130 -9.21011 -8.38468 -6.53888 -0.04323 0.57707 0.93793 1.29249 1.35059 1.35842 1.46267 1.61828 2.30128 2.35463 2.55193 2.93427 2.97657 3.11353 3.48339 3.61814 3.73455 3.89297 4.00355 4.07820 4.13151 4.17201 4.26192 4.30436 4.38252 4.49543 4.59388 4.61286 4.68064 4.77445 4.81947 4.90649 4.92904 4.95440 5.00661 5.01662 5.17592 5.26320 5.28301 5.44908 5.52020 5.55658 5.60899 5.62642 5.63827 5.73846 5.97243 6.10999 6.37445 6.52189 6.64382 6.79481 7.15937 7.40111 8.69717 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.003046 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.500525 B = 9190.685565 C =10402.783800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.047 0.953 9 C 0.263 3.737 10 N -0.331 5.331 11 N -0.329 5.329 12 C 0.080 3.920 13 C -0.317 4.317 14 C 0.598 3.402 15 O -0.572 6.572 16 N -0.711 5.711 17 C 0.145 3.855 18 C 0.026 3.974 19 H 0.101 0.899 20 C -0.134 4.134 21 C 0.008 3.992 22 N -0.651 5.651 23 C 0.179 3.821 24 C -0.059 4.059 25 C -0.111 4.111 26 C -0.133 4.133 27 C -0.103 4.103 28 C -0.133 4.133 29 C -0.053 4.053 30 H 0.274 0.726 31 H 0.056 0.944 32 H 0.031 0.969 33 H 0.230 0.770 34 H 0.409 0.591 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.326 0.674 42 H 0.107 0.893 43 H 0.145 0.855 44 H 0.159 0.841 45 H 0.150 0.850 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.612 -17.098 -4.921 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.175 4.175 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.591 4.591 8 H 0.066 0.934 9 C 0.144 3.856 10 N -0.108 5.108 11 N -0.149 5.149 12 C -0.106 4.106 13 C -0.332 4.332 14 C 0.386 3.614 15 O -0.452 6.452 16 N -0.362 5.362 17 C 0.022 3.978 18 C -0.085 4.085 19 H 0.119 0.881 20 C -0.172 4.172 21 C -0.122 4.122 22 N -0.277 5.277 23 C 0.043 3.957 24 C -0.061 4.061 25 C -0.130 4.130 26 C -0.150 4.150 27 C -0.121 4.121 28 C -0.150 4.150 29 C -0.072 4.072 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.246 0.754 34 H 0.245 0.755 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.139 0.861 42 H 0.125 0.875 43 H 0.163 0.837 44 H 0.176 0.824 45 H 0.168 0.832 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.145 -16.406 -5.252 21.077 hybrid contribution 0.871 0.734 1.002 1.517 sum 13.016 -15.673 -4.250 20.811 Atomic orbital electron populations 1.69984 1.07184 1.28916 1.49160 1.25681 0.95836 1.02512 0.93511 0.85401 0.78437 0.78158 0.78834 1.19314 1.19507 1.19759 1.21319 0.92985 0.90857 1.53933 0.93423 1.19544 0.86403 0.80904 0.98706 1.49339 1.33484 1.25517 1.02419 1.77048 1.16262 1.12027 1.09563 1.24451 0.96617 0.96102 0.93453 1.20196 1.12078 1.06757 0.94158 1.17063 0.78297 0.79538 0.86457 1.90743 1.66984 1.72521 1.14979 1.45483 1.45690 1.34253 1.10785 1.21239 0.93572 0.89916 0.93112 1.23496 0.94123 0.92925 0.97995 0.88076 1.23344 1.00953 0.94018 0.98927 1.23636 0.92658 0.97515 0.98417 1.66928 1.34066 1.05635 1.21115 1.20278 0.94000 0.92735 0.88648 1.18075 0.94763 1.04094 0.89154 1.21306 0.94911 0.99256 0.97513 1.21269 1.01003 1.00545 0.92233 1.21602 0.92094 0.97667 1.00707 1.21345 0.98019 1.00388 0.95284 1.21123 0.97977 0.94859 0.93277 0.91654 0.92601 0.95121 0.75376 0.75523 0.92820 0.91262 0.89657 0.89047 0.89521 0.89746 0.86076 0.87511 0.83717 0.82388 0.83198 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.10 13.29 21.45 0.28 -51.82 16 2 C 0.03 1.44 5.46 84.65 0.46 1.91 16 3 Si 0.97 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.55 -31.62 9.39 25.60 0.24 -31.38 16 8 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 9 C 0.26 14.14 5.96 85.63 0.51 14.65 16 10 N -0.33 -16.05 3.59 -338.02 -1.21 -17.26 16 11 N -0.33 -14.49 12.48 -56.40 -0.70 -15.19 16 12 C 0.08 2.70 11.48 85.60 0.98 3.68 16 13 C -0.32 -11.88 6.13 -19.95 -0.12 -12.00 16 14 C 0.60 19.84 7.69 86.59 0.67 20.51 16 15 O -0.57 -22.01 12.92 -4.14 -0.05 -22.06 16 16 N -0.71 -16.33 5.55 -466.62 -2.59 -18.92 16 17 C 0.15 2.89 5.71 86.38 0.49 3.38 16 18 C 0.03 0.33 4.27 45.02 0.19 0.52 16 19 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 20 C -0.13 -1.39 7.85 31.24 0.25 -1.15 16 21 C 0.01 0.07 8.90 86.40 0.77 0.84 16 22 N -0.65 -8.96 8.33 -502.92 -4.19 -13.15 16 23 C 0.18 7.93 6.50 41.43 0.27 8.20 16 24 C -0.06 -2.51 5.26 -20.10 -0.11 -2.62 16 25 C -0.11 -4.49 8.50 22.53 0.19 -4.29 16 26 C -0.13 -4.39 10.03 22.23 0.22 -4.17 16 27 C -0.10 -2.97 10.04 22.33 0.22 -2.75 16 28 C -0.13 -4.16 10.03 22.23 0.22 -3.93 16 29 C -0.05 -2.03 7.54 22.53 0.17 -1.86 16 30 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.06 3.03 5.08 -2.38 -0.01 3.02 16 32 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.23 4.86 7.49 -2.91 -0.02 4.84 16 34 H 0.41 7.04 7.42 -92.70 -0.69 6.35 16 35 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.08 1.05 8.10 -2.39 -0.02 1.03 16 38 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.33 3.59 8.91 -89.70 -0.80 2.79 16 42 H 0.11 4.49 6.56 -2.91 -0.02 4.47 16 43 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 44 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 45 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 46 H 0.12 4.56 6.75 -2.91 -0.02 4.54 16 Total: -1.00 -73.56 385.36 -1.26 -74.82 By element: Atomic # 1 Polarization: 28.73 SS G_CDS: -0.46 Total: 28.27 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.63 Total: -10.47 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -8.41 Total: -116.34 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -73.56 -1.26 -74.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052796.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.762 kcal (2) G-P(sol) polarization free energy of solvation -73.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds