Wall clock time and date at job start Sat Apr 11 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99647 * 2 1 4 4 H 1.48491 * 109.47382 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46905 * 299.99865 * 3 2 1 6 6 H 1.48504 * 109.47250 * 59.99578 * 3 2 1 7 7 C 1.37876 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00044 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46952 * 180.02562 * 9 7 2 11 11 N 1.39917 * 125.80427 * 270.03609 * 10 9 7 12 12 C 1.30450 * 109.21936 * 179.97438 * 11 10 9 13 13 C 1.41089 * 108.30381 * 359.74290 * 12 11 10 14 14 C 1.47176 * 126.48180 * 180.27012 * 13 12 11 15 15 O 1.21637 * 120.00007 * 180.18272 * 14 13 12 16 16 N 1.34777 * 120.00103 * 0.17298 * 14 13 12 17 17 C 1.46503 * 119.99692 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.46638 * 180.02562 * 17 16 14 19 19 H 1.08993 * 112.95569 * 53.35265 * 18 17 16 20 20 C 1.53934 * 113.75763 * 185.00369 * 18 17 16 21 21 C 1.53929 * 86.34244 * 138.03666 * 20 18 17 22 22 N 1.47959 * 86.18065 * 336.27565 * 21 20 18 23 23 C 1.35175 * 125.81115 * 89.99929 * 10 9 7 24 24 C 1.47730 * 126.47103 * 0.03739 * 23 10 9 25 25 C 1.39616 * 120.14622 * 315.24558 * 24 23 10 26 26 C 1.37952 * 119.84735 * 180.23747 * 25 24 23 27 27 C 1.38369 * 120.14956 * 359.51427 * 26 25 24 28 28 C 1.38365 * 120.29935 * 0.26052 * 27 26 25 29 29 C 1.37952 * 120.14786 * 359.97017 * 28 27 26 30 30 H 0.96994 * 120.00662 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47110 * 59.99492 * 9 7 2 32 32 H 1.09009 * 109.46753 * 300.00198 * 9 7 2 33 33 H 1.08001 * 125.84937 * 180.02562 * 12 11 10 34 34 H 0.96993 * 120.00024 * 0.02562 * 16 14 13 35 35 H 1.08992 * 109.47388 * 300.00308 * 17 16 14 36 36 H 1.09003 * 109.47149 * 60.01017 * 17 16 14 37 37 H 1.09001 * 113.73508 * 252.39983 * 20 18 17 38 38 H 1.09009 * 113.73419 * 23.57296 * 20 18 17 39 39 H 1.08996 * 113.76405 * 90.59441 * 21 20 18 40 40 H 1.09008 * 113.75923 * 221.96122 * 21 20 18 41 41 H 1.00900 * 111.00433 * 271.79385 * 22 21 20 42 42 H 1.07995 * 120.08283 * 0.02562 * 25 24 23 43 43 H 1.08002 * 119.92889 * 179.79877 * 26 25 24 44 44 H 1.07997 * 119.85090 * 180.27730 * 27 26 25 45 45 H 1.07996 * 119.92869 * 180.02562 * 28 27 26 46 46 H 1.08003 * 120.07513 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3964 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0018 11 7 2.7366 -4.2347 -1.1323 12 6 3.5491 -5.1845 -0.7589 13 6 3.5797 -5.2125 0.6514 14 6 4.3707 -6.1260 1.4916 15 8 4.3048 -6.0481 2.7036 16 7 5.1680 -7.0489 0.9179 17 6 5.9550 -7.9585 1.7543 18 6 6.7674 -8.8983 0.8611 19 1 7.3733 -8.3682 0.1263 20 6 7.5399 -9.9792 1.6385 21 6 7.0928 -10.9535 0.5339 22 7 5.9767 -10.0125 0.2931 23 6 2.7164 -4.2132 1.0986 24 6 2.4226 -3.8713 2.5055 25 6 2.3981 -2.5359 2.9122 26 6 2.1278 -2.2240 4.2285 27 6 1.8715 -3.2305 5.1428 28 6 1.8896 -4.5557 4.7454 29 6 2.1631 -4.8819 3.4332 30 1 -0.4851 0.8399 -0.0004 31 1 0.6248 -2.5571 -0.8896 32 1 0.6241 -2.5566 0.8904 33 1 4.1067 -5.8348 -1.4166 34 1 5.2208 -7.1108 -0.0486 35 1 6.6317 -7.3801 2.3831 36 1 5.2852 -8.5441 2.3841 37 1 8.6169 -9.8133 1.6677 38 1 7.1176 -10.2008 2.6187 39 1 7.7934 -11.0258 -0.2979 40 1 6.7740 -11.9261 0.9089 41 1 5.1861 -10.2312 0.8806 42 1 2.5935 -1.7491 2.1987 43 1 2.1117 -1.1916 4.5452 44 1 1.6561 -2.9805 6.1711 45 1 1.6883 -5.3364 5.4639 46 1 2.1774 -5.9167 3.1244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580052797.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:27 Heat of formation + Delta-G solvation = 95.301779 kcal Electronic energy + Delta-G solvation = -29031.434114 eV Core-core repulsion = 25116.373027 eV Total energy + Delta-G solvation = -3915.061087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.84640 -40.06594 -38.49899 -38.24056 -34.37895 -33.91697 -32.11576 -31.40344 -30.31897 -29.29979 -28.08650 -27.47360 -27.10558 -24.10063 -23.13654 -22.56518 -22.09013 -21.54453 -20.77549 -19.62777 -19.14875 -17.61840 -16.82506 -16.35750 -16.05602 -15.73179 -15.49304 -15.14769 -14.88990 -14.78591 -14.58033 -14.11379 -13.94183 -13.76677 -13.53768 -13.18024 -13.10700 -12.89311 -12.59736 -12.51957 -12.34584 -12.22528 -12.07675 -11.71348 -11.32310 -11.23740 -11.14214 -10.97194 -10.85629 -10.51778 -10.38703 -10.26425 -9.94110 -9.40946 -9.08027 -8.98672 -8.80461 -8.74266 -8.32108 -8.18415 -7.72761 -6.36487 -4.44587 1.40340 2.00810 2.41262 2.80153 3.08504 3.14546 3.23358 3.28198 3.42160 3.76467 3.92116 4.14412 4.20669 4.31664 4.37995 4.72927 4.94388 4.98366 5.03417 5.05460 5.17289 5.25621 5.31751 5.40323 5.41329 5.45246 5.51042 5.60573 5.64240 5.74939 5.83157 5.91250 6.00817 6.06008 6.27567 6.43066 6.56994 6.62888 6.72574 6.89283 6.92851 6.93542 7.04728 7.12442 7.14782 7.48255 7.53294 7.72370 7.74079 7.77452 8.33569 8.60113 8.63628 9.21451 10.71300 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.003051 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.194039 B = 9176.136849 C =10458.698125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.250 3.750 10 N -0.306 5.306 11 N -0.290 5.290 12 C 0.059 3.941 13 C -0.317 4.317 14 C 0.599 3.401 15 O -0.547 6.547 16 N -0.731 5.731 17 C 0.127 3.873 18 C 0.033 3.967 19 H 0.114 0.886 20 C -0.181 4.181 21 C 0.016 3.984 22 N -0.655 5.655 23 C 0.200 3.800 24 C -0.046 4.046 25 C -0.080 4.080 26 C -0.135 4.135 27 C -0.110 4.110 28 C -0.141 4.141 29 C -0.043 4.043 30 H 0.269 0.731 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.178 0.822 34 H 0.401 0.599 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.340 0.660 42 H 0.151 0.849 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.117 0.883 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.377 -16.509 5.586 20.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.134 4.134 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.579 4.579 8 H 0.085 0.915 9 C 0.133 3.867 10 N -0.082 5.082 11 N -0.110 5.110 12 C -0.127 4.127 13 C -0.333 4.333 14 C 0.389 3.611 15 O -0.426 6.426 16 N -0.383 5.383 17 C 0.002 3.998 18 C -0.077 4.077 19 H 0.131 0.869 20 C -0.220 4.220 21 C -0.114 4.114 22 N -0.284 5.284 23 C 0.063 3.937 24 C -0.048 4.048 25 C -0.099 4.099 26 C -0.153 4.153 27 C -0.128 4.128 28 C -0.159 4.159 29 C -0.062 4.062 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.195 0.805 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.156 0.844 42 H 0.169 0.831 43 H 0.138 0.862 44 H 0.133 0.867 45 H 0.135 0.865 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.448 -15.465 4.528 18.680 hybrid contribution 0.953 0.334 1.094 1.489 sum 10.401 -15.131 5.622 19.202 Atomic orbital electron populations 1.69920 1.06054 1.27829 1.48220 1.24911 0.94952 0.99409 0.94138 0.86338 0.80141 0.82499 0.78042 1.19396 1.20504 1.20443 1.21238 0.93726 0.89292 1.53653 0.91461 1.19928 0.86172 0.80271 1.00353 1.49633 1.32017 1.25205 1.01389 1.77118 1.14458 1.10232 1.09227 1.23681 0.98360 0.97356 0.93289 1.19814 1.12564 1.07634 0.93278 1.17259 0.77980 0.78842 0.87020 1.90766 1.66380 1.71422 1.14026 1.45643 1.46634 1.35859 1.10199 1.21401 0.93991 0.91496 0.92935 1.23521 0.95159 0.92896 0.96142 0.86855 1.24503 1.02091 0.95876 0.99553 1.23518 0.94659 0.95947 0.97274 1.65192 1.05887 1.03397 1.53910 1.19786 0.93481 0.91985 0.88414 1.17925 1.03855 0.93873 0.89135 1.21951 0.95040 0.96123 0.96756 1.21007 1.01791 0.99127 0.93345 1.21182 0.99422 0.93125 0.99077 1.20880 1.03139 0.96111 0.95813 1.21056 0.94278 0.98511 0.92339 0.92080 0.92438 0.92412 0.80506 0.76410 0.90876 0.91699 0.90872 0.89521 0.88523 0.90861 0.84398 0.83142 0.86171 0.86703 0.86537 0.85946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.00 13.29 55.43 0.74 -23.26 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 3 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.13 7.21 -34.44 -0.25 -14.38 16 8 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.25 6.21 5.42 -5.20 -0.03 6.19 16 10 N -0.31 -6.98 3.59 -58.20 -0.21 -7.19 16 11 N -0.29 -6.21 12.48 30.82 0.38 -5.82 16 12 C 0.06 1.03 11.48 -17.06 -0.20 0.83 16 13 C -0.32 -5.88 6.13 -104.75 -0.64 -6.52 16 14 C 0.60 9.90 7.70 -12.63 -0.10 9.80 16 15 O -0.55 -10.29 12.97 5.24 0.07 -10.23 16 16 N -0.73 -8.83 5.55 -61.46 -0.34 -9.17 16 17 C 0.13 1.25 5.54 -4.04 -0.02 1.23 16 18 C 0.03 0.25 4.36 -66.65 -0.29 -0.04 16 19 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 20 C -0.18 -1.08 7.84 -25.80 -0.20 -1.29 16 21 C 0.02 0.10 8.90 -2.77 -0.02 0.07 16 22 N -0.65 -5.17 8.49 -110.32 -0.94 -6.11 16 23 C 0.20 4.22 6.50 -82.07 -0.53 3.69 16 24 C -0.05 -0.93 5.08 -104.99 -0.53 -1.47 16 25 C -0.08 -1.63 8.62 -39.17 -0.34 -1.97 16 26 C -0.13 -2.36 10.03 -39.64 -0.40 -2.76 16 27 C -0.11 -1.71 10.04 -39.49 -0.40 -2.11 16 28 C -0.14 -2.26 10.03 -39.64 -0.40 -2.66 16 29 C -0.04 -0.78 7.55 -39.17 -0.30 -1.07 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.06 1.48 7.29 -51.92 -0.38 1.10 16 33 H 0.18 2.23 7.49 -52.49 -0.39 1.84 16 34 H 0.40 4.17 7.42 -40.82 -0.30 3.87 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.67 7.94 -51.93 -0.41 0.25 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.50 8.10 -51.92 -0.42 0.08 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 41 H 0.34 2.61 8.44 -39.29 -0.33 2.28 16 42 H 0.15 3.38 5.51 -52.49 -0.29 3.09 16 43 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 44 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 46 H 0.12 2.21 6.80 -52.48 -0.36 1.85 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -30.34 383.23 -10.52 -40.86 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.23 Total: 10.50 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -4.74 Total: -10.70 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.36 Total: -51.54 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.34 -10.52 -40.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052797.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.163 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds