Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99647 * 2 1 4 4 H 1.48491 * 109.47382 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46905 * 299.99865 * 3 2 1 6 6 H 1.48504 * 109.47250 * 59.99578 * 3 2 1 7 7 C 1.37876 * 120.00313 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99870 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00044 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.46952 * 180.02562 * 9 7 2 11 11 N 1.39917 * 125.80427 * 270.03609 * 10 9 7 12 12 C 1.30450 * 109.21936 * 179.97438 * 11 10 9 13 13 C 1.41089 * 108.30381 * 359.74290 * 12 11 10 14 14 C 1.47176 * 126.48180 * 180.27012 * 13 12 11 15 15 O 1.21637 * 120.00007 * 180.18272 * 14 13 12 16 16 N 1.34777 * 120.00103 * 0.17298 * 14 13 12 17 17 C 1.46503 * 119.99692 * 180.02562 * 16 14 13 18 18 C 1.53008 * 109.46638 * 180.02562 * 17 16 14 19 19 H 1.08993 * 112.95569 * 53.35265 * 18 17 16 20 20 C 1.53934 * 113.75763 * 185.00369 * 18 17 16 21 21 C 1.53929 * 86.34244 * 138.03666 * 20 18 17 22 22 N 1.47959 * 86.18065 * 336.27565 * 21 20 18 23 23 C 1.35175 * 125.81115 * 89.99929 * 10 9 7 24 24 C 1.47730 * 126.47103 * 0.03739 * 23 10 9 25 25 C 1.39616 * 120.14622 * 315.24558 * 24 23 10 26 26 C 1.37952 * 119.84735 * 180.23747 * 25 24 23 27 27 C 1.38369 * 120.14956 * 359.51427 * 26 25 24 28 28 C 1.38365 * 120.29935 * 0.26052 * 27 26 25 29 29 C 1.37952 * 120.14786 * 359.97017 * 28 27 26 30 30 H 0.96994 * 120.00662 * 0.02562 * 1 2 3 31 31 H 1.08994 * 109.47110 * 59.99492 * 9 7 2 32 32 H 1.09009 * 109.46753 * 300.00198 * 9 7 2 33 33 H 1.08001 * 125.84937 * 180.02562 * 12 11 10 34 34 H 0.96993 * 120.00024 * 0.02562 * 16 14 13 35 35 H 1.08992 * 109.47388 * 300.00308 * 17 16 14 36 36 H 1.09003 * 109.47149 * 60.01017 * 17 16 14 37 37 H 1.09001 * 113.73508 * 252.39983 * 20 18 17 38 38 H 1.09009 * 113.73419 * 23.57296 * 20 18 17 39 39 H 1.08996 * 113.76405 * 90.59441 * 21 20 18 40 40 H 1.09008 * 113.75923 * 221.96122 * 21 20 18 41 41 H 1.00900 * 111.00433 * 271.79385 * 22 21 20 42 42 H 1.07995 * 120.08283 * 0.02562 * 25 24 23 43 43 H 1.08002 * 119.92889 * 179.79877 * 26 25 24 44 44 H 1.07997 * 119.85090 * 180.27730 * 27 26 25 45 45 H 1.07996 * 119.92869 * 180.02562 * 28 27 26 46 46 H 1.08003 * 120.07513 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8902 2.3964 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2033 -3.6125 0.0018 11 7 2.7366 -4.2347 -1.1323 12 6 3.5491 -5.1845 -0.7589 13 6 3.5797 -5.2125 0.6514 14 6 4.3707 -6.1260 1.4916 15 8 4.3048 -6.0481 2.7036 16 7 5.1680 -7.0489 0.9179 17 6 5.9550 -7.9585 1.7543 18 6 6.7674 -8.8983 0.8611 19 1 7.3733 -8.3682 0.1263 20 6 7.5399 -9.9792 1.6385 21 6 7.0928 -10.9535 0.5339 22 7 5.9767 -10.0125 0.2931 23 6 2.7164 -4.2132 1.0986 24 6 2.4226 -3.8713 2.5055 25 6 2.3981 -2.5359 2.9122 26 6 2.1278 -2.2240 4.2285 27 6 1.8715 -3.2305 5.1428 28 6 1.8896 -4.5557 4.7454 29 6 2.1631 -4.8819 3.4332 30 1 -0.4851 0.8399 -0.0004 31 1 0.6248 -2.5571 -0.8896 32 1 0.6241 -2.5566 0.8904 33 1 4.1067 -5.8348 -1.4166 34 1 5.2208 -7.1108 -0.0486 35 1 6.6317 -7.3801 2.3831 36 1 5.2852 -8.5441 2.3841 37 1 8.6169 -9.8133 1.6677 38 1 7.1176 -10.2008 2.6187 39 1 7.7934 -11.0258 -0.2979 40 1 6.7740 -11.9261 0.9089 41 1 5.1861 -10.2312 0.8806 42 1 2.5935 -1.7491 2.1987 43 1 2.1117 -1.1916 4.5452 44 1 1.6561 -2.9805 6.1711 45 1 1.6883 -5.3364 5.4639 46 1 2.1774 -5.9167 3.1244 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052797.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = 74.214722 kcal Electronic energy + Delta-G solvation = -29032.348517 eV Core-core repulsion = 25116.373027 eV Total energy + Delta-G solvation = -3915.975491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.35640 -40.77748 -39.70801 -39.59743 -35.85531 -35.45507 -33.79508 -32.95727 -31.70154 -30.48609 -29.53782 -28.72348 -27.92475 -25.61714 -24.46173 -23.79218 -23.51013 -22.83626 -21.45795 -21.02918 -20.50686 -18.97842 -18.81625 -17.61249 -17.20455 -16.79586 -16.63172 -16.46638 -16.25227 -15.99482 -15.65956 -15.59866 -15.18718 -15.06820 -14.80578 -14.55821 -14.36267 -14.12490 -13.95965 -13.63238 -13.58040 -13.49104 -13.33698 -13.01635 -12.92327 -12.76626 -12.39118 -12.26478 -11.94148 -11.89368 -11.86157 -11.76087 -11.69593 -10.79116 -10.77325 -10.64042 -10.08849 -9.78233 -9.68220 -9.39683 -9.18936 -8.38304 -6.53831 -0.04631 0.60697 0.98186 1.31142 1.34394 1.37317 1.47194 1.60641 2.28786 2.32869 2.54532 2.92676 2.98047 3.13392 3.52025 3.57694 3.71264 3.75785 4.06283 4.11966 4.13785 4.18990 4.30912 4.36977 4.37978 4.54033 4.62789 4.66573 4.69773 4.79822 4.81171 4.82230 4.92315 4.95458 4.98269 5.07591 5.17620 5.23215 5.33983 5.46462 5.52623 5.57989 5.63953 5.65572 5.70134 5.72972 5.98237 6.13941 6.37147 6.53099 6.63830 6.80336 7.15598 7.38605 8.69972 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.003051 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.194039 B = 9176.136849 C =10458.698125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.051 0.949 9 C 0.272 3.728 10 N -0.333 5.333 11 N -0.329 5.329 12 C 0.080 3.920 13 C -0.318 4.318 14 C 0.599 3.401 15 O -0.571 6.571 16 N -0.711 5.711 17 C 0.128 3.872 18 C 0.037 3.963 19 H 0.118 0.882 20 C -0.173 4.173 21 C 0.017 3.983 22 N -0.670 5.670 23 C 0.181 3.819 24 C -0.069 4.069 25 C -0.108 4.108 26 C -0.141 4.141 27 C -0.098 4.098 28 C -0.135 4.135 29 C -0.050 4.050 30 H 0.274 0.726 31 H 0.030 0.970 32 H 0.041 0.959 33 H 0.228 0.772 34 H 0.412 0.588 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.340 0.660 42 H 0.120 0.880 43 H 0.136 0.864 44 H 0.157 0.843 45 H 0.152 0.848 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.033 -17.983 6.967 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.070 0.930 9 C 0.153 3.847 10 N -0.109 5.109 11 N -0.149 5.149 12 C -0.106 4.106 13 C -0.333 4.333 14 C 0.388 3.612 15 O -0.452 6.452 16 N -0.363 5.363 17 C 0.004 3.996 18 C -0.073 4.073 19 H 0.136 0.864 20 C -0.212 4.212 21 C -0.112 4.112 22 N -0.299 5.299 23 C 0.046 3.954 24 C -0.071 4.071 25 C -0.127 4.127 26 C -0.159 4.159 27 C -0.116 4.116 28 C -0.153 4.153 29 C -0.069 4.069 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.244 0.756 34 H 0.248 0.752 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.102 0.898 41 H 0.156 0.844 42 H 0.138 0.862 43 H 0.154 0.846 44 H 0.175 0.825 45 H 0.170 0.830 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.131 -16.978 5.891 21.139 hybrid contribution 0.497 0.633 0.712 1.075 sum 11.627 -16.345 6.604 21.118 Atomic orbital electron populations 1.70005 1.07308 1.28885 1.48863 1.25667 0.95702 1.02425 0.93501 0.85386 0.78578 0.78553 0.78533 1.19651 1.19864 1.19177 1.21254 0.92926 0.90360 1.53780 0.93031 1.19351 0.86234 0.81081 0.98038 1.49358 1.33184 1.25856 1.02475 1.77053 1.16345 1.11984 1.09528 1.24439 0.96556 0.96047 0.93537 1.20169 1.11864 1.07219 0.94074 1.17044 0.78415 0.79310 0.86426 1.90744 1.67330 1.72230 1.14877 1.45505 1.45192 1.34602 1.10999 1.21526 0.93717 0.91211 0.93113 1.23478 0.95038 0.92604 0.96186 0.86425 1.24439 1.02429 0.94767 0.99517 1.23581 0.93996 0.96193 0.97446 1.65211 1.06531 1.04039 1.54112 1.20292 0.93963 0.92546 0.88633 1.18104 1.05319 0.94413 0.89281 1.21807 0.97577 0.95577 0.97760 1.21270 1.01339 1.00766 0.92519 1.21605 0.97238 0.92276 1.00506 1.21324 1.01254 0.97430 0.95311 1.21149 0.94683 0.97884 0.93192 0.91643 0.95170 0.94123 0.75597 0.75189 0.91393 0.91829 0.89977 0.89206 0.88085 0.89803 0.84403 0.86236 0.84608 0.82527 0.82999 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.24 13.29 21.45 0.28 -50.95 16 2 C 0.03 1.56 5.46 84.65 0.46 2.02 16 3 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.55 -30.07 7.21 25.60 0.18 -29.88 16 8 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 9 C 0.27 14.49 5.42 85.63 0.46 14.96 16 10 N -0.33 -16.02 3.59 -338.04 -1.21 -17.23 16 11 N -0.33 -14.51 12.48 -56.41 -0.70 -15.22 16 12 C 0.08 2.74 11.48 85.60 0.98 3.73 16 13 C -0.32 -11.84 6.13 -19.95 -0.12 -11.96 16 14 C 0.60 19.38 7.70 86.59 0.67 20.05 16 15 O -0.57 -21.22 12.97 -4.15 -0.05 -21.27 16 16 N -0.71 -15.94 5.55 -466.59 -2.59 -18.53 16 17 C 0.13 2.30 5.54 86.38 0.48 2.78 16 18 C 0.04 0.48 4.36 45.02 0.20 0.67 16 19 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 20 C -0.17 -1.62 7.84 31.24 0.24 -1.38 16 21 C 0.02 0.17 8.90 86.40 0.77 0.94 16 22 N -0.67 -9.07 8.49 -502.93 -4.27 -13.34 16 23 C 0.18 7.96 6.50 41.43 0.27 8.23 16 24 C -0.07 -2.92 5.08 -20.10 -0.10 -3.02 16 25 C -0.11 -4.61 8.62 22.53 0.19 -4.42 16 26 C -0.14 -4.90 10.03 22.23 0.22 -4.68 16 27 C -0.10 -2.82 10.04 22.33 0.22 -2.60 16 28 C -0.14 -4.04 10.03 22.23 0.22 -3.82 16 29 C -0.05 -1.82 7.55 22.53 0.17 -1.65 16 30 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 31 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.04 2.26 7.29 -2.38 -0.02 2.25 16 33 H 0.23 5.09 7.49 -2.91 -0.02 5.07 16 34 H 0.41 7.55 7.42 -92.71 -0.69 6.86 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.20 7.94 -2.39 -0.02 1.18 16 37 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.09 0.81 8.10 -2.38 -0.02 0.79 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.34 4.55 8.44 -89.69 -0.76 3.80 16 42 H 0.12 5.77 5.51 -2.91 -0.02 5.76 16 43 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 44 H 0.16 3.20 8.06 -2.91 -0.02 3.17 16 45 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 46 H 0.12 4.36 6.80 -2.91 -0.02 4.34 16 Total: -1.00 -69.53 383.23 -1.40 -70.94 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.42 Total: 30.98 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 5.53 Total: -10.03 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -8.49 Total: -115.27 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.05 Total: -21.27 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -69.53 -1.40 -70.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052797.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.153 kcal (2) G-P(sol) polarization free energy of solvation -69.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds