Wall clock time and date at job start Sat Apr 11 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31361 * 1 3 3 Si 1.86805 * 119.99944 * 2 1 4 4 H 1.48497 * 109.46958 * 240.00082 * 3 2 1 5 5 H 1.48504 * 109.46923 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46877 * 120.00127 * 3 2 1 7 7 C 1.39050 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99352 * 165.75817 * 7 2 1 9 9 N 1.36861 * 120.00108 * 345.76550 * 7 2 1 10 10 C 1.34779 * 120.00095 * 304.41647 * 9 7 2 11 11 O 1.21592 * 120.00119 * 183.54018 * 10 9 7 12 12 C 1.47730 * 119.99603 * 3.25911 * 10 9 7 13 13 C 1.39643 * 120.15097 * 317.24997 * 12 10 9 14 14 C 1.37938 * 119.84621 * 179.74349 * 13 12 10 15 15 C 1.38380 * 120.14775 * 0.56381 * 14 13 12 16 16 C 1.50700 * 119.84729 * 179.71801 * 15 14 13 17 17 C 1.50692 * 109.47123 * 269.97774 * 16 15 14 18 18 N 1.33246 * 125.52637 * 269.69020 * 17 16 15 19 19 C 1.30831 * 109.82898 * 179.85344 * 18 17 16 20 20 N 1.34430 * 108.07950 * 0.40934 * 19 18 17 21 21 H 0.97002 * 126.82513 * 179.79226 * 20 19 18 22 22 N 1.30715 * 125.52903 * 89.99834 * 17 16 15 23 23 C 1.38374 * 120.30578 * 359.69320 * 15 14 13 24 24 C 1.37929 * 120.15360 * 0.02562 * 23 15 14 25 25 C 1.46504 * 120.00361 * 124.41721 * 9 7 2 26 26 C 1.54269 * 110.03069 * 62.19593 * 25 9 7 27 27 C 1.54963 * 104.15847 * 217.13986 * 26 25 9 28 28 C 1.54894 * 102.77790 * 37.88638 * 27 26 25 29 29 C 1.53874 * 110.03174 * 304.97797 * 25 9 7 30 30 H 0.97006 * 120.00118 * 5.07749 * 1 2 3 31 31 H 1.08000 * 120.07794 * 0.02951 * 13 12 10 32 32 H 1.08000 * 119.93088 * 180.27920 * 14 13 12 33 33 H 1.09005 * 109.46906 * 29.97911 * 16 15 14 34 34 H 1.08997 * 109.47268 * 149.97217 * 16 15 14 35 35 H 1.08003 * 125.96340 * 180.12208 * 19 18 17 36 36 H 1.08006 * 119.92269 * 180.02562 * 23 15 14 37 37 H 1.07997 * 120.08236 * 179.97438 * 24 23 15 38 38 H 1.08997 * 110.01646 * 183.58210 * 25 9 7 39 39 H 1.08997 * 110.48500 * 335.78492 * 26 25 9 40 40 H 1.08998 * 110.48791 * 98.42632 * 26 25 9 41 41 H 1.09003 * 110.71821 * 279.57403 * 27 26 25 42 42 H 1.09001 * 110.92378 * 156.29498 * 27 26 25 43 43 H 1.09006 * 110.48372 * 203.40921 * 28 27 26 44 44 H 1.08993 * 110.59721 * 80.81867 * 28 27 26 45 45 H 1.08995 * 110.03540 * 238.56795 * 29 25 9 46 46 H 1.09001 * 110.03121 * 359.95311 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.1013 1.6964 -1.2125 5 1 1.2826 2.7465 0.0006 6 1 3.1014 1.6964 1.2125 7 6 2.0088 -1.2042 0.0005 8 1 3.0640 -1.2186 -0.2296 9 7 1.3560 -2.3712 0.2925 10 6 0.6771 -2.4920 1.4505 11 8 0.1512 -3.5496 1.7394 12 6 0.5771 -1.3413 2.3716 13 6 1.6971 -0.5468 2.6255 14 6 1.5953 0.5293 3.4825 15 6 0.3899 0.8151 4.0991 16 6 0.2880 1.9886 5.0391 17 6 0.6108 1.5389 6.4407 18 7 -0.2713 1.0874 7.3314 19 6 0.3411 0.7806 8.4462 20 7 1.6500 1.0437 8.2892 21 1 2.3512 0.9189 8.9478 22 7 1.8007 1.5340 6.9817 23 6 -0.7224 0.0287 3.8562 24 6 -0.6363 -1.0469 2.9970 25 6 1.3952 -3.4890 -0.6536 26 6 2.8483 -3.9720 -0.8410 27 6 2.9339 -4.3425 -2.3433 28 6 2.0739 -3.2442 -3.0165 29 6 0.9027 -3.0268 -2.0362 30 1 -0.4850 0.8368 -0.0744 31 1 2.6395 -0.7715 2.1483 32 1 2.4595 1.1474 3.6763 33 1 0.9938 2.7611 4.7337 34 1 -0.7249 2.3901 5.0105 35 1 -0.1245 0.3891 9.3386 36 1 -1.6603 0.2577 4.3404 37 1 -1.5051 -1.6601 2.8085 38 1 0.7737 -4.3074 -0.2902 39 1 3.5497 -3.1718 -0.6051 40 1 3.0428 -4.8464 -0.2199 41 1 2.5082 -5.3300 -2.5218 42 1 3.9639 -4.2977 -2.6972 43 1 1.7039 -3.5880 -3.9825 44 1 2.6485 -2.3255 -3.1340 45 1 0.0427 -3.6214 -2.3443 46 1 0.6338 -1.9710 -2.0030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617991116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:33 Heat of formation + Delta-G solvation = 59.049141 kcal Electronic energy + Delta-G solvation = -29862.366778 eV Core-core repulsion = 25945.733659 eV Total energy + Delta-G solvation = -3916.633119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.00771 -41.17252 -39.59792 -38.17837 -36.05804 -34.78202 -33.21636 -32.92016 -31.79934 -31.67412 -29.44941 -29.09236 -27.92661 -26.60686 -23.95576 -23.58581 -23.13208 -21.67414 -21.46350 -21.04131 -20.89254 -19.20597 -18.87357 -17.50297 -17.25595 -16.91081 -16.44339 -16.21669 -16.07663 -15.91106 -15.71755 -15.62067 -14.92566 -14.81483 -14.56493 -14.28061 -14.18093 -14.12603 -13.39859 -13.32743 -13.11190 -13.00934 -12.92529 -12.66565 -12.44919 -12.37024 -12.25581 -12.11124 -11.84883 -11.82524 -11.74858 -11.36361 -11.31687 -11.04923 -10.99382 -10.80498 -10.65114 -10.41695 -9.63844 -9.38419 -9.01643 -8.21142 -6.08119 0.29648 0.70136 0.74060 1.46488 1.50812 1.54821 1.88454 1.94686 2.15491 2.38103 2.88441 3.10938 3.23927 3.41973 3.73864 3.86537 3.93947 3.97492 4.09220 4.16691 4.26468 4.28100 4.39383 4.58069 4.63140 4.67949 4.72048 4.77817 4.78946 4.81642 4.91140 4.92549 5.09784 5.13159 5.18238 5.25343 5.29284 5.31660 5.41749 5.45116 5.52314 5.55764 5.61634 5.65730 5.74033 5.86422 6.15657 6.23280 6.31541 6.71153 7.09665 7.16659 7.64487 8.10792 8.84231 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017057 B = 0.003425 C = 0.003171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.117432 B = 8172.070762 C = 8827.293368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.049 3.951 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.287 1.287 6 H -0.246 1.246 7 C -0.360 4.360 8 H 0.085 0.915 9 N -0.435 5.435 10 C 0.527 3.473 11 O -0.648 6.648 12 C -0.065 4.065 13 C -0.070 4.070 14 C -0.130 4.130 15 C -0.079 4.079 16 C 0.018 3.982 17 C 0.229 3.771 18 N -0.576 5.576 19 C 0.272 3.728 20 N -0.478 5.478 21 H 0.457 0.543 22 N -0.343 5.343 23 C -0.112 4.112 24 C -0.089 4.089 25 C 0.120 3.880 26 C -0.122 4.122 27 C -0.108 4.108 28 C -0.108 4.108 29 C -0.118 4.118 30 H 0.268 0.732 31 H 0.128 0.872 32 H 0.131 0.869 33 H 0.105 0.895 34 H 0.111 0.889 35 H 0.272 0.728 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.510 3.953 10.265 11.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.159 4.159 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.169 1.169 7 C -0.487 4.487 8 H 0.103 0.897 9 N -0.151 5.151 10 C 0.318 3.682 11 O -0.538 6.538 12 C -0.068 4.068 13 C -0.089 4.089 14 C -0.148 4.148 15 C -0.081 4.081 16 C -0.021 4.021 17 C -0.053 4.053 18 N -0.305 5.305 19 C -0.026 4.026 20 N -0.198 5.198 21 H 0.305 0.695 22 N -0.173 5.173 23 C -0.130 4.130 24 C -0.109 4.109 25 C 0.017 3.983 26 C -0.160 4.160 27 C -0.146 4.146 28 C -0.145 4.145 29 C -0.157 4.157 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.149 0.851 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.287 0.713 36 H 0.156 0.844 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.383 3.782 9.965 11.524 hybrid contribution 0.173 0.457 0.292 0.570 sum 4.556 4.240 10.257 11.998 Atomic orbital electron populations 1.69928 1.07468 1.28417 1.44685 1.25989 0.95334 1.01528 0.93074 0.85864 0.79061 0.78920 0.80039 1.19672 1.21308 1.16929 1.19033 0.93489 0.82925 1.53233 0.89739 1.43377 1.45565 1.13060 1.13127 1.18948 0.79879 0.86812 0.82565 1.90532 1.54047 1.31368 1.77823 1.19568 0.95071 0.96094 0.96071 1.21329 0.98640 0.93615 0.95332 1.21056 0.97803 0.98123 0.97838 1.19658 0.93377 0.97197 0.97832 1.18866 1.05002 0.94904 0.83360 1.24123 0.86548 0.97376 0.97300 1.70391 1.35596 1.22554 1.01939 1.27034 0.81816 0.94489 0.99251 1.48060 1.10428 1.49688 1.11577 0.69461 1.77923 1.22650 1.23835 0.92941 1.20891 0.99083 0.94601 0.98446 1.20921 0.95970 0.97509 0.96467 1.21838 0.97028 0.89384 0.90086 1.22596 0.95547 1.00010 0.97894 1.22408 1.00588 0.98517 0.93056 1.22215 0.95817 0.98867 0.97643 1.22242 0.98071 1.01230 0.94117 0.92189 0.85462 0.85104 0.87714 0.87028 0.71277 0.84449 0.88393 0.93138 0.91551 0.92444 0.90722 0.89747 0.90386 0.92157 0.93263 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.66 11.94 21.68 0.26 -45.40 16 2 C 0.05 2.35 3.16 84.96 0.27 2.62 16 3 Si 0.94 38.53 28.06 68.60 1.92 40.45 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.36 -17.51 5.14 84.10 0.43 -17.08 16 8 H 0.09 3.99 6.95 -2.91 -0.02 3.97 16 9 N -0.43 -22.07 2.35 -612.73 -1.44 -23.51 16 10 C 0.53 28.97 6.82 86.75 0.59 29.56 16 11 O -0.65 -38.91 16.32 -4.01 -0.07 -38.98 16 12 C -0.07 -3.24 3.62 -20.09 -0.07 -3.31 16 13 C -0.07 -3.13 6.11 22.54 0.14 -2.99 16 14 C -0.13 -4.98 9.34 22.23 0.21 -4.77 16 15 C -0.08 -2.80 5.12 -19.80 -0.10 -2.90 16 16 C 0.02 0.51 5.96 29.10 0.17 0.68 16 17 C 0.23 6.56 7.38 138.63 1.02 7.58 16 18 N -0.58 -15.02 11.19 -191.80 -2.15 -17.17 16 19 C 0.27 4.45 13.13 180.36 2.37 6.82 16 20 N -0.48 -8.30 7.45 -60.49 -0.45 -8.75 16 21 H 0.46 4.09 8.96 -213.09 -1.91 2.18 16 22 N -0.34 -9.36 12.80 -51.34 -0.66 -10.02 16 23 C -0.11 -4.31 9.68 22.23 0.22 -4.09 16 24 C -0.09 -4.14 9.67 22.54 0.22 -3.92 16 25 C 0.12 5.46 3.28 45.72 0.15 5.61 16 26 C -0.12 -4.51 6.43 31.70 0.20 -4.31 16 27 C -0.11 -3.13 6.91 31.91 0.22 -2.90 16 28 C -0.11 -3.45 6.83 31.67 0.22 -3.23 16 29 C -0.12 -4.89 6.25 31.32 0.20 -4.70 16 30 H 0.27 13.71 8.32 -92.70 -0.77 12.94 16 31 H 0.13 5.72 6.35 -2.91 -0.02 5.70 16 32 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 33 H 0.10 2.64 8.08 -2.38 -0.02 2.63 16 34 H 0.11 2.79 8.08 -2.39 -0.02 2.77 16 35 H 0.27 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 38 H 0.05 2.51 6.96 -2.39 -0.02 2.50 16 39 H 0.07 2.56 6.65 -2.39 -0.02 2.54 16 40 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 44 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.06 2.77 7.18 -2.39 -0.02 2.75 16 Total: -1.00 -73.27 374.85 2.97 -70.29 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.90 Total: 34.42 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 6.45 Total: -1.34 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -4.43 Total: -104.85 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.07 Total: -38.98 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.92 Total: 40.45 kcal Total: -73.27 2.97 -70.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617991116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.344 kcal (2) G-P(sol) polarization free energy of solvation -73.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds