Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00314 * 2 1 4 4 H 1.48506 * 109.46626 * 269.99828 * 3 2 1 5 5 H 1.48496 * 109.47138 * 29.99271 * 3 2 1 6 6 H 1.48490 * 109.47277 * 149.99839 * 3 2 1 7 7 C 1.38816 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99814 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00205 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47164 * 34.99612 * 10 9 7 12 12 C 1.52996 * 109.47178 * 154.99919 * 10 9 7 13 13 N 1.46496 * 109.47243 * 304.99841 * 12 10 9 14 14 C 1.34781 * 119.99992 * 179.97438 * 13 12 10 15 15 O 1.21591 * 119.99931 * 0.02562 * 14 13 12 16 16 C 1.47526 * 119.99936 * 179.97438 * 14 13 12 17 17 C 1.39591 * 120.21830 * 0.02562 * 16 14 13 18 18 C 1.37865 * 119.96607 * 180.02562 * 17 16 14 19 19 C 1.38567 * 120.41475 * 0.02562 * 18 17 16 20 20 C 1.37970 * 120.44329 * 359.97438 * 19 18 17 21 21 C 1.39241 * 120.02334 * 0.02562 * 20 19 18 22 22 C 1.48183 * 120.20733 * 180.02562 * 21 20 19 23 23 C 1.40970 * 126.25521 * 129.66544 * 22 21 20 24 24 N 1.30628 * 108.06876 * 179.81709 * 23 22 21 25 25 N 1.40000 * 108.56954 * 0.44278 * 24 23 22 26 26 H 0.97003 * 125.86135 * 179.71174 * 25 24 23 27 27 C 1.34697 * 108.27040 * 359.71555 * 25 24 23 28 28 C 1.53000 * 109.46803 * 274.99981 * 10 9 7 29 29 C 1.52997 * 117.49870 * 128.74514 * 28 10 9 30 30 C 1.52998 * 117.50179 * 60.08458 * 28 10 9 31 31 H 0.97004 * 119.99519 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00167 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47105 * 184.99461 * 12 10 9 34 34 H 1.09006 * 109.47224 * 64.99891 * 12 10 9 35 35 H 0.97002 * 120.00008 * 0.02562 * 13 12 10 36 36 H 1.07998 * 120.01938 * 359.97438 * 17 16 14 37 37 H 1.08005 * 119.79024 * 179.72261 * 18 17 16 38 38 H 1.07995 * 119.77520 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.98932 * 180.02562 * 20 19 18 40 40 H 1.08009 * 125.96667 * 0.02562 * 23 22 21 41 41 H 1.08002 * 126.20052 * 179.97438 * 27 25 24 42 42 H 1.09003 * 115.54811 * 274.41564 * 28 10 9 43 43 H 1.09000 * 117.50178 * 359.97438 * 29 28 10 44 44 H 1.09002 * 117.49782 * 145.01705 * 29 28 10 45 45 H 1.09004 * 117.50234 * 214.97926 * 30 28 10 46 46 H 1.08996 * 117.49849 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 1 2.9682 -3.5504 0.5917 12 6 1.1803 -4.7519 0.6111 13 7 0.7327 -4.3346 1.9422 14 6 -0.0578 -5.1461 2.6724 15 8 -0.3990 -6.2247 2.2266 16 6 -0.5080 -4.7262 4.0131 17 6 -0.1186 -3.4892 4.5295 18 6 -0.5419 -3.1022 5.7832 19 6 -1.3533 -3.9344 6.5375 20 6 -1.7485 -5.1607 6.0437 21 6 -1.3316 -5.5699 4.7798 22 6 -1.7540 -6.8858 4.2452 23 6 -2.3287 -7.1265 2.9807 24 7 -2.5580 -8.4083 2.8771 25 7 -2.1524 -9.0310 4.0636 26 1 -2.2135 -9.9796 4.2572 27 6 -1.6630 -8.0868 4.8902 28 6 2.4229 -4.0363 -1.4349 29 6 3.8833 -4.3900 -1.7229 30 6 3.3043 -3.0632 -2.2204 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 1.7551 -5.6744 0.6936 34 1 0.3131 -4.9200 -0.0277 35 1 1.0046 -3.4740 2.2976 36 1 0.5147 -2.8359 3.9476 37 1 -0.2352 -2.1464 6.1818 38 1 -1.6793 -3.6208 7.5181 39 1 -2.3813 -5.8034 6.6378 40 1 -2.5394 -6.3815 2.2275 41 1 -1.2703 -8.2495 5.8830 42 1 1.6553 -4.5783 -1.9874 43 1 4.5842 -4.3520 -0.8890 44 1 4.0766 -5.1645 -2.4651 45 1 3.1170 -2.9654 -3.2898 46 1 3.6239 -2.1525 -1.7139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661132250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = 112.240654 kcal Electronic energy + Delta-G solvation = -29096.386378 eV Core-core repulsion = 25182.059815 eV Total energy + Delta-G solvation = -3914.326562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11025 -39.70384 -38.19083 -37.38168 -34.70634 -33.46657 -32.34581 -31.58940 -31.14011 -30.50713 -28.51507 -27.84643 -24.32066 -23.32990 -23.00837 -22.09503 -21.69773 -21.64289 -20.14199 -20.02153 -19.47345 -18.21599 -17.54153 -16.98818 -15.83142 -15.54062 -15.22741 -14.98147 -14.79988 -14.72731 -14.38717 -14.16528 -14.11948 -13.62807 -13.44931 -13.37933 -13.14366 -12.95338 -12.74893 -12.35980 -11.91036 -11.76977 -11.38504 -11.23630 -11.13976 -10.88263 -10.87109 -10.71145 -10.58505 -10.14036 -9.99188 -9.92740 -9.54811 -9.31072 -9.26889 -9.00718 -8.97672 -8.92985 -8.51465 -7.90556 -7.06256 -5.83027 -3.12671 0.90549 1.29373 2.09040 2.95310 3.01704 3.30463 3.38060 3.43857 3.45753 3.60042 4.01409 4.40807 4.58305 4.74783 4.87287 4.91993 4.93447 5.06955 5.23110 5.28866 5.44810 5.48273 5.49068 5.52381 5.60075 5.69889 5.76529 5.83818 5.90685 5.96577 6.04032 6.06166 6.08404 6.18049 6.33593 6.40639 6.47533 6.53189 6.55189 6.60956 6.77181 6.79387 6.89773 6.95338 6.98634 7.35560 7.63607 7.85505 7.98782 8.33664 8.62780 9.46009 10.00202 10.36630 11.38567 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003398 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.417651 B = 8237.878638 C =10072.892747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.008 4.008 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.716 5.716 10 C 0.193 3.807 11 H 0.054 0.946 12 C 0.121 3.879 13 N -0.707 5.707 14 C 0.551 3.449 15 O -0.536 6.536 16 C -0.127 4.127 17 C -0.075 4.075 18 C -0.132 4.132 19 C -0.095 4.095 20 C -0.128 4.128 21 C 0.053 3.947 22 C -0.200 4.200 23 C 0.142 3.858 24 N -0.314 5.314 25 N -0.486 5.486 26 H 0.435 0.565 27 C 0.068 3.932 28 C -0.158 4.158 29 C -0.197 4.197 30 C -0.156 4.156 31 H 0.255 0.745 32 H 0.386 0.614 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.408 0.592 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.179 0.821 41 H 0.172 0.828 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 -12.753 12.706 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.357 5.357 10 C 0.082 3.918 11 H 0.072 0.928 12 C -0.003 4.003 13 N -0.359 5.359 14 C 0.338 3.662 15 O -0.414 6.414 16 C -0.130 4.130 17 C -0.094 4.094 18 C -0.150 4.150 19 C -0.113 4.113 20 C -0.147 4.147 21 C 0.050 3.950 22 C -0.212 4.212 23 C -0.046 4.046 24 N -0.136 5.136 25 N -0.192 5.192 26 H 0.278 0.722 27 C -0.080 4.080 28 C -0.180 4.180 29 C -0.234 4.234 30 C -0.193 4.193 31 H 0.065 0.935 32 H 0.220 0.780 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.246 0.754 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.196 0.804 41 H 0.189 0.811 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.569 -14.263 11.622 18.465 hybrid contribution 0.736 1.743 0.545 1.969 sum -0.832 -12.521 12.167 17.478 Atomic orbital electron populations 1.69661 1.05014 1.25684 1.57128 1.24707 0.95409 0.97493 1.02830 0.86287 0.78690 0.84195 0.77572 1.21770 1.21832 1.20800 1.19151 0.90807 0.83851 1.43142 0.91176 1.42454 1.05831 0.99374 1.88087 1.20057 0.94328 0.86171 0.91236 0.92779 1.21577 0.98572 0.97433 0.82764 1.45947 1.50366 1.21699 1.17874 1.18172 0.78811 0.84415 0.84792 1.90745 1.56426 1.22078 1.72197 1.20002 1.01628 0.95890 0.95526 1.21425 0.97777 0.94575 0.95610 1.21117 0.99047 1.00189 0.94676 1.21214 0.96680 0.93863 0.99573 1.21123 1.01305 0.96952 0.95271 1.18045 0.93113 0.91325 0.92469 1.18683 1.13478 0.92203 0.96789 1.23722 0.92976 0.92877 0.95027 1.77226 1.24858 1.08329 1.03183 1.46042 1.51172 1.09522 1.12453 0.72236 1.22415 0.99629 0.89019 0.96961 1.23027 0.92136 1.03033 0.99830 1.22959 0.97322 0.99815 1.03341 1.22776 1.03411 0.94023 0.99088 0.93467 0.78009 0.91697 0.91704 0.75422 0.84938 0.85512 0.85824 0.85720 0.80448 0.81117 0.89139 0.89575 0.90117 0.90243 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.24 13.06 55.49 0.72 -25.51 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 21.15 29.55 -169.99 -5.02 16.13 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.24 -5.94 8.63 -15.06 -0.13 -6.07 16 8 H 0.07 1.71 6.91 -52.49 -0.36 1.35 16 9 N -0.72 -16.00 4.54 -53.43 -0.24 -16.25 16 10 C 0.19 3.52 2.70 -67.93 -0.18 3.33 16 11 H 0.05 1.00 7.84 -51.93 -0.41 0.60 16 12 C 0.12 2.04 5.21 -4.05 -0.02 2.02 16 13 N -0.71 -11.66 5.34 -61.35 -0.33 -11.98 16 14 C 0.55 9.17 7.70 -12.47 -0.10 9.07 16 15 O -0.54 -9.88 11.37 5.29 0.06 -9.82 16 16 C -0.13 -1.86 5.90 -104.70 -0.62 -2.48 16 17 C -0.08 -1.00 9.53 -39.21 -0.37 -1.37 16 18 C -0.13 -1.48 10.02 -39.60 -0.40 -1.88 16 19 C -0.09 -0.95 10.02 -39.56 -0.40 -1.34 16 20 C -0.13 -1.37 9.69 -39.31 -0.38 -1.75 16 21 C 0.05 0.70 5.78 -104.53 -0.60 0.10 16 22 C -0.20 -2.74 4.66 -105.36 -0.49 -3.23 16 23 C 0.14 2.21 8.86 -17.03 -0.15 2.06 16 24 N -0.31 -4.79 12.66 30.82 0.39 -4.40 16 25 N -0.49 -5.48 7.32 30.65 0.22 -5.25 16 26 H 0.43 3.28 8.96 -182.67 -1.64 1.64 16 27 C 0.07 0.73 11.87 -16.88 -0.20 0.53 16 28 C -0.16 -2.74 5.36 -90.62 -0.49 -3.23 16 29 C -0.20 -2.98 10.18 -26.70 -0.27 -3.25 16 30 C -0.16 -2.74 9.78 -26.70 -0.26 -3.00 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.39 9.49 7.80 -40.82 -0.32 9.17 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.41 6.78 6.17 -40.82 -0.25 6.53 16 36 H 0.13 1.77 6.40 -52.49 -0.34 1.43 16 37 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.18 2.88 7.33 -52.48 -0.38 2.49 16 41 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.09 1.55 8.11 -51.93 -0.42 1.12 16 43 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 44 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.10 2.05 6.23 -51.93 -0.32 1.73 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -31.04 383.47 -10.95 -41.99 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: -7.38 Total: 20.10 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -5.16 Total: -10.79 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: 0.77 Total: -63.39 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.06 Total: -9.82 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.04 -10.95 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661132250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.230 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds