Wall clock time and date at job start Sat Apr 11 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00314 * 2 1 4 4 H 1.48506 * 109.46626 * 269.99828 * 3 2 1 5 5 H 1.48496 * 109.47138 * 29.99271 * 3 2 1 6 6 H 1.48490 * 109.47277 * 149.99839 * 3 2 1 7 7 C 1.38816 * 119.99642 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99814 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00205 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47164 * 34.99612 * 10 9 7 12 12 C 1.52996 * 109.47178 * 154.99919 * 10 9 7 13 13 N 1.46496 * 109.47243 * 304.99841 * 12 10 9 14 14 C 1.34781 * 119.99992 * 179.97438 * 13 12 10 15 15 O 1.21591 * 119.99931 * 0.02562 * 14 13 12 16 16 C 1.47526 * 119.99936 * 179.97438 * 14 13 12 17 17 C 1.39591 * 120.21830 * 0.02562 * 16 14 13 18 18 C 1.37865 * 119.96607 * 180.02562 * 17 16 14 19 19 C 1.38567 * 120.41475 * 0.02562 * 18 17 16 20 20 C 1.37970 * 120.44329 * 359.97438 * 19 18 17 21 21 C 1.39241 * 120.02334 * 0.02562 * 20 19 18 22 22 C 1.48183 * 120.20733 * 180.02562 * 21 20 19 23 23 C 1.40970 * 126.25521 * 129.66544 * 22 21 20 24 24 N 1.30628 * 108.06876 * 179.81709 * 23 22 21 25 25 N 1.40000 * 108.56954 * 0.44278 * 24 23 22 26 26 H 0.97003 * 125.86135 * 179.71174 * 25 24 23 27 27 C 1.34697 * 108.27040 * 359.71555 * 25 24 23 28 28 C 1.53000 * 109.46803 * 274.99981 * 10 9 7 29 29 C 1.52997 * 117.49870 * 128.74514 * 28 10 9 30 30 C 1.52998 * 117.50179 * 60.08458 * 28 10 9 31 31 H 0.97004 * 119.99519 * 0.02562 * 1 2 3 32 32 H 0.97003 * 120.00167 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47105 * 184.99461 * 12 10 9 34 34 H 1.09006 * 109.47224 * 64.99891 * 12 10 9 35 35 H 0.97002 * 120.00008 * 0.02562 * 13 12 10 36 36 H 1.07998 * 120.01938 * 359.97438 * 17 16 14 37 37 H 1.08005 * 119.79024 * 179.72261 * 18 17 16 38 38 H 1.07995 * 119.77520 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.98932 * 180.02562 * 20 19 18 40 40 H 1.08009 * 125.96667 * 0.02562 * 23 22 21 41 41 H 1.08002 * 126.20052 * 179.97438 * 27 25 24 42 42 H 1.09003 * 115.54811 * 274.41564 * 28 10 9 43 43 H 1.09000 * 117.50178 * 359.97438 * 29 28 10 44 44 H 1.09002 * 117.49782 * 145.01705 * 29 28 10 45 45 H 1.09004 * 117.50234 * 214.97926 * 30 28 10 46 46 H 1.08996 * 117.49849 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 1 2.9682 -3.5504 0.5917 12 6 1.1803 -4.7519 0.6111 13 7 0.7327 -4.3346 1.9422 14 6 -0.0578 -5.1461 2.6724 15 8 -0.3990 -6.2247 2.2266 16 6 -0.5080 -4.7262 4.0131 17 6 -0.1186 -3.4892 4.5295 18 6 -0.5419 -3.1022 5.7832 19 6 -1.3533 -3.9344 6.5375 20 6 -1.7485 -5.1607 6.0437 21 6 -1.3316 -5.5699 4.7798 22 6 -1.7540 -6.8858 4.2452 23 6 -2.3287 -7.1265 2.9807 24 7 -2.5580 -8.4083 2.8771 25 7 -2.1524 -9.0310 4.0636 26 1 -2.2135 -9.9796 4.2572 27 6 -1.6630 -8.0868 4.8902 28 6 2.4229 -4.0363 -1.4349 29 6 3.8833 -4.3900 -1.7229 30 6 3.3043 -3.0632 -2.2204 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0005 33 1 1.7551 -5.6744 0.6936 34 1 0.3131 -4.9200 -0.0277 35 1 1.0046 -3.4740 2.2976 36 1 0.5147 -2.8359 3.9476 37 1 -0.2352 -2.1464 6.1818 38 1 -1.6793 -3.6208 7.5181 39 1 -2.3813 -5.8034 6.6378 40 1 -2.5394 -6.3815 2.2275 41 1 -1.2703 -8.2495 5.8830 42 1 1.6553 -4.5783 -1.9874 43 1 4.5842 -4.3520 -0.8890 44 1 4.0766 -5.1645 -2.4651 45 1 3.1170 -2.9654 -3.2898 46 1 3.6239 -2.1525 -1.7139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661132250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:38 Heat of formation + Delta-G solvation = 92.856174 kcal Electronic energy + Delta-G solvation = -29097.226952 eV Core-core repulsion = 25182.059815 eV Total energy + Delta-G solvation = -3915.167136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11408 -40.86302 -39.37134 -38.71494 -36.11469 -35.18101 -33.35138 -32.93958 -32.18638 -31.86795 -29.67040 -29.21943 -25.83536 -24.81688 -23.98200 -23.36026 -23.01994 -22.74028 -21.44016 -21.08247 -20.75872 -19.42707 -18.97677 -18.30352 -17.09306 -16.84349 -16.48722 -16.25729 -16.09315 -15.84373 -15.75401 -15.47833 -15.17559 -14.96372 -14.90942 -14.74043 -14.32284 -13.96864 -13.93138 -13.69103 -13.14619 -12.97320 -12.84343 -12.67199 -12.65742 -12.41603 -12.25398 -12.09863 -11.96834 -11.71493 -11.61831 -11.15055 -11.00054 -10.87351 -10.76680 -10.30519 -10.07165 -9.94848 -9.74771 -8.98075 -8.86980 -7.86198 -5.14084 -0.07360 0.40041 1.13552 1.50446 1.52252 1.58956 1.89646 2.14302 2.19721 2.33132 2.59681 3.01363 3.07995 3.50208 3.77919 3.79062 3.86774 3.99689 4.02084 4.13346 4.17692 4.27580 4.35487 4.35722 4.39567 4.53795 4.58017 4.61040 4.67652 4.75765 4.86709 4.89488 4.94905 5.05700 5.15016 5.15675 5.17857 5.39846 5.42921 5.47608 5.56682 5.59710 5.61947 5.63415 5.74554 6.05202 6.32779 6.57772 6.66547 6.84689 7.33162 7.41265 8.11686 8.38034 9.36409 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003398 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.417651 B = 8237.878638 C =10072.892747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.067 4.067 3 Si 0.958 3.042 4 H -0.296 1.296 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.722 5.722 10 C 0.198 3.802 11 H 0.056 0.944 12 C 0.132 3.868 13 N -0.709 5.709 14 C 0.546 3.454 15 O -0.558 6.558 16 C -0.154 4.154 17 C -0.089 4.089 18 C -0.136 4.136 19 C -0.082 4.082 20 C -0.122 4.122 21 C 0.044 3.956 22 C -0.226 4.226 23 C 0.122 3.878 24 N -0.348 5.348 25 N -0.472 5.472 26 H 0.451 0.549 27 C 0.092 3.908 28 C -0.174 4.174 29 C -0.162 4.162 30 C -0.172 4.172 31 H 0.247 0.753 32 H 0.372 0.628 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.407 0.593 36 H 0.121 0.879 37 H 0.146 0.854 38 H 0.161 0.839 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.219 0.781 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 -14.007 15.315 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.260 4.260 3 Si 0.789 3.211 4 H -0.224 1.224 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.351 4.351 8 H 0.094 0.906 9 N -0.362 5.362 10 C 0.089 3.911 11 H 0.074 0.926 12 C 0.008 3.992 13 N -0.361 5.361 14 C 0.335 3.665 15 O -0.439 6.439 16 C -0.157 4.157 17 C -0.108 4.108 18 C -0.154 4.154 19 C -0.100 4.100 20 C -0.140 4.140 21 C 0.041 3.959 22 C -0.237 4.237 23 C -0.065 4.065 24 N -0.172 5.172 25 N -0.180 5.180 26 H 0.298 0.702 27 C -0.057 4.057 28 C -0.195 4.195 29 C -0.200 4.200 30 C -0.209 4.209 31 H 0.056 0.944 32 H 0.204 0.796 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.244 0.756 36 H 0.139 0.861 37 H 0.163 0.837 38 H 0.179 0.821 39 H 0.173 0.827 40 H 0.172 0.828 41 H 0.235 0.765 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.124 0.876 45 H 0.104 0.896 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.430 -15.564 14.227 21.091 hybrid contribution 0.412 2.002 -0.212 2.055 sum -0.018 -13.561 14.015 19.502 Atomic orbital electron populations 1.69813 1.06387 1.25561 1.59837 1.25338 0.96012 1.00288 1.04322 0.85361 0.77972 0.80780 0.76975 1.22395 1.22751 1.19357 1.19443 0.91095 0.84570 1.40008 0.90562 1.42546 1.05256 1.00321 1.88044 1.20126 0.94001 0.84792 0.92155 0.92573 1.21407 0.97746 0.97255 0.82830 1.45948 1.50707 1.21716 1.17688 1.18619 0.78181 0.84013 0.85639 1.90735 1.57139 1.23010 1.72967 1.19943 1.03675 0.97205 0.94858 1.21427 0.98416 0.94181 0.96755 1.21410 0.98954 1.01241 0.93829 1.21644 0.94823 0.92914 1.00594 1.21459 1.00739 0.97562 0.94209 1.18219 0.93050 0.91130 0.93473 1.18859 1.14695 0.93647 0.96526 1.23534 0.94250 0.92849 0.95832 1.77121 1.26294 1.08401 1.05358 1.46062 1.50068 1.10559 1.11359 0.70220 1.23043 0.97187 0.87521 0.97978 1.22922 0.93920 1.03950 0.98744 1.23028 0.95146 0.98349 1.03467 1.22730 1.04675 0.94277 0.99255 0.94394 0.79561 0.90676 0.93263 0.75601 0.86133 0.83665 0.82100 0.82708 0.82789 0.76482 0.89040 0.88585 0.87624 0.89631 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.40 13.06 21.65 0.28 -56.12 16 2 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.96 44.18 29.55 68.60 2.03 46.21 16 4 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.22 -11.05 8.63 84.04 0.73 -10.33 16 8 H 0.08 3.71 6.91 -2.91 -0.02 3.69 16 9 N -0.72 -33.12 4.54 -322.95 -1.47 -34.58 16 10 C 0.20 7.30 2.70 44.99 0.12 7.42 16 11 H 0.06 2.06 7.84 -2.39 -0.02 2.04 16 12 C 0.13 4.60 5.21 86.38 0.45 5.05 16 13 N -0.71 -24.50 5.34 -466.27 -2.49 -26.99 16 14 C 0.55 19.06 7.70 86.69 0.67 19.72 16 15 O -0.56 -21.58 11.37 -4.00 -0.05 -21.63 16 16 C -0.15 -4.58 5.90 -19.91 -0.12 -4.70 16 17 C -0.09 -2.38 9.53 22.51 0.21 -2.17 16 18 C -0.14 -2.81 10.02 22.26 0.22 -2.59 16 19 C -0.08 -1.34 10.02 22.28 0.22 -1.12 16 20 C -0.12 -2.22 9.69 22.45 0.22 -2.00 16 21 C 0.04 1.12 5.78 -19.81 -0.11 1.01 16 22 C -0.23 -6.03 4.66 -20.34 -0.09 -6.12 16 23 C 0.12 3.96 8.86 85.54 0.76 4.72 16 24 N -0.35 -10.76 12.66 -56.39 -0.71 -11.47 16 25 N -0.47 -9.85 7.32 -56.95 -0.42 -10.26 16 26 H 0.45 5.79 8.96 -213.38 -1.91 3.88 16 27 C 0.09 1.75 11.87 83.87 1.00 2.74 16 28 C -0.17 -5.93 5.36 -10.80 -0.06 -5.99 16 29 C -0.16 -4.55 10.18 30.62 0.31 -4.24 16 30 C -0.17 -5.93 9.78 30.62 0.30 -5.63 16 31 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 32 H 0.37 19.11 7.80 -92.71 -0.72 18.39 16 33 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 34 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.41 14.23 6.17 -92.71 -0.57 13.66 16 36 H 0.12 3.40 6.40 -2.91 -0.02 3.38 16 37 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 40 H 0.15 5.52 7.33 -2.91 -0.02 5.50 16 41 H 0.22 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.09 3.11 8.11 -2.39 -0.02 3.09 16 43 H 0.10 2.53 8.05 -2.39 -0.02 2.51 16 44 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 46 H 0.08 3.21 6.23 -2.39 -0.01 3.19 16 Total: -1.00 -70.02 383.47 0.31 -69.72 By element: Atomic # 1 Polarization: 54.66 SS G_CDS: -2.16 Total: 52.50 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.29 Total: -7.37 kcal Atomic # 7 Polarization: -134.62 SS G_CDS: -4.80 Total: -139.42 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.05 Total: -21.63 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.02 0.31 -69.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661132250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.574 kcal (2) G-P(sol) polarization free energy of solvation -70.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds