Wall clock time and date at job start Sat Apr 11 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99838 * 2 1 4 4 H 1.48502 * 109.46989 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46748 * 299.99535 * 3 2 1 6 6 H 1.48500 * 109.47242 * 59.99669 * 3 2 1 7 7 C 1.38811 * 119.99693 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99703 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99653 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.47351 * 324.99919 * 10 9 7 12 12 C 1.53002 * 109.46724 * 205.00083 * 10 9 7 13 13 N 1.46496 * 109.47037 * 55.00335 * 12 10 9 14 14 C 1.34777 * 119.99875 * 180.02562 * 13 12 10 15 15 O 1.21583 * 120.00178 * 0.26799 * 14 13 12 16 16 C 1.47636 * 120.00087 * 179.97438 * 14 13 12 17 17 C 1.39754 * 120.02796 * 359.72236 * 16 14 13 18 18 C 1.37611 * 119.97316 * 179.76776 * 17 16 14 19 19 C 1.39521 * 120.02661 * 0.48464 * 18 17 16 20 20 C 1.48266 * 119.97250 * 179.76445 * 19 18 17 21 21 C 1.40954 * 126.24745 * 180.02562 * 20 19 18 22 22 N 1.30628 * 108.06873 * 179.97438 * 21 20 19 23 23 N 1.40000 * 108.56968 * 359.97438 * 22 21 20 24 24 H 0.97001 * 125.87562 * 180.02562 * 23 22 21 25 25 C 1.34717 * 108.25462 * 359.77235 * 23 22 21 26 26 C 1.39529 * 120.05698 * 359.78869 * 19 18 17 27 27 C 1.37617 * 120.02661 * 359.95767 * 26 19 18 28 28 C 1.52994 * 109.47140 * 85.00528 * 10 9 7 29 29 C 1.53001 * 117.50160 * 8.74117 * 28 10 9 30 30 C 1.53002 * 117.49946 * 300.08074 * 28 10 9 31 31 H 0.96995 * 119.99928 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00720 * 0.02562 * 9 7 2 33 33 H 1.08996 * 109.47407 * 294.99670 * 12 10 9 34 34 H 1.09000 * 109.46986 * 174.99898 * 12 10 9 35 35 H 0.97004 * 120.00597 * 359.97438 * 13 12 10 36 36 H 1.08004 * 120.00929 * 359.97438 * 17 16 14 37 37 H 1.07999 * 119.98767 * 180.26977 * 18 17 16 38 38 H 1.07991 * 125.96316 * 359.93119 * 21 20 19 39 39 H 1.08000 * 126.19816 * 180.26242 * 25 23 22 40 40 H 1.07993 * 119.98837 * 179.97438 * 26 19 18 41 41 H 1.08000 * 120.01268 * 180.02562 * 27 26 19 42 42 H 1.08999 * 115.55129 * 154.42035 * 28 10 9 43 43 H 1.08998 * 117.49585 * 0.02562 * 29 28 10 44 44 H 1.09002 * 117.49875 * 145.02050 * 29 28 10 45 45 H 1.08993 * 117.50377 * 214.98581 * 30 28 10 46 46 H 1.09002 * 117.49461 * 0.02562 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 2.0581 -3.6568 0.0027 11 1 2.9688 -3.5511 -0.5868 12 6 1.1809 -4.7526 -0.6060 13 7 0.7344 -4.3371 -1.9379 14 6 -0.0555 -5.1495 -2.6677 15 8 -0.4015 -6.2251 -2.2187 16 6 -0.5060 -4.7306 -4.0098 17 6 -0.1185 -3.4893 -4.5217 18 6 -0.5351 -3.1019 -5.7747 19 6 -1.3523 -3.9436 -6.5299 20 6 -1.8047 -3.5228 -7.8777 21 6 -2.6281 -4.2638 -8.7495 22 7 -2.8032 -3.5609 -9.8365 23 7 -2.1062 -2.3540 -9.7042 24 1 -2.0661 -1.6453 -10.3653 25 6 -1.5052 -2.3437 -8.4986 26 6 -1.7446 -5.1808 -6.0177 27 6 -1.3250 -5.5726 -4.7670 28 6 2.4219 -4.0343 1.4400 29 6 1.8133 -3.1964 2.5663 30 6 3.2994 -3.0583 2.2263 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0016 33 1 0.3133 -4.9200 0.0323 34 1 1.7558 -5.6751 -0.6869 35 1 1.0065 -3.4770 -2.2944 36 1 0.5104 -2.8357 -3.9354 37 1 -0.2322 -2.1446 -6.1723 38 1 -3.0412 -5.2421 -8.5532 39 1 -0.8953 -1.5482 -8.0967 40 1 -2.3775 -5.8312 -6.6030 41 1 -1.6284 -6.5305 -4.3709 42 1 2.5632 -5.0992 1.6250 43 1 1.1534 -2.3763 2.2832 44 1 1.5545 -3.7099 3.4922 45 1 4.0177 -3.4810 2.9288 46 1 3.6172 -2.1470 1.7197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661177121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:46 Heat of formation + Delta-G solvation = 101.550320 kcal Electronic energy + Delta-G solvation = -28132.532309 eV Core-core repulsion = 24217.742179 eV Total energy + Delta-G solvation = -3914.790130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.52584 -39.86332 -38.25599 -37.46023 -34.50633 -33.30747 -32.82467 -31.76442 -31.16596 -30.58622 -29.04162 -27.85470 -24.44144 -23.48445 -23.22215 -22.45809 -21.52360 -21.41650 -20.71076 -19.91865 -19.12422 -18.51016 -17.74930 -17.08139 -15.81814 -15.46070 -15.30317 -15.04360 -14.99333 -14.74753 -14.67547 -14.39883 -14.30371 -13.64477 -13.59518 -13.52780 -13.10850 -12.94649 -12.84042 -12.61225 -12.09910 -12.00552 -11.29958 -11.19339 -11.09549 -10.93985 -10.92123 -10.85200 -10.52862 -10.11903 -10.10091 -9.86020 -9.75176 -9.65909 -9.44632 -9.17133 -9.01405 -8.98353 -8.63068 -7.98767 -7.09674 -5.86584 -3.16848 0.67073 1.43565 1.61731 2.44242 2.51015 3.28825 3.35016 3.42281 3.44078 3.58263 4.07567 4.31292 4.47057 4.49449 4.62436 4.75657 4.92129 4.96200 5.14685 5.15802 5.27184 5.34847 5.40000 5.44524 5.57608 5.69442 5.73329 5.82100 5.84768 5.98037 6.00375 6.04955 6.07588 6.14181 6.37977 6.39700 6.43853 6.48022 6.50815 6.64712 6.74659 6.84789 6.86671 6.92836 7.00460 7.26316 7.27015 7.63222 7.95980 8.30273 8.58551 9.42788 9.96766 10.33269 11.34675 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.002709 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.506170 B =10334.630565 C =12414.850340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.008 4.008 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.191 3.809 11 H 0.057 0.943 12 C 0.119 3.881 13 N -0.707 5.707 14 C 0.554 3.446 15 O -0.554 6.554 16 C -0.138 4.138 17 C -0.070 4.070 18 C -0.129 4.129 19 C 0.024 3.976 20 C -0.203 4.203 21 C 0.070 3.930 22 N -0.297 5.297 23 N -0.473 5.473 24 H 0.442 0.558 25 C 0.080 3.920 26 C -0.131 4.131 27 C -0.053 4.053 28 C -0.177 4.177 29 C -0.163 4.163 30 C -0.176 4.176 31 H 0.255 0.745 32 H 0.387 0.613 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.409 0.591 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.188 0.812 39 H 0.183 0.817 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.086 0.914 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.046 -6.673 -14.727 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.204 4.204 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.080 3.920 11 H 0.075 0.925 12 C -0.005 4.005 13 N -0.359 5.359 14 C 0.341 3.659 15 O -0.434 6.434 16 C -0.141 4.141 17 C -0.089 4.089 18 C -0.148 4.148 19 C 0.022 3.978 20 C -0.214 4.214 21 C -0.117 4.117 22 N -0.118 5.118 23 N -0.180 5.180 24 H 0.286 0.714 25 C -0.069 4.069 26 C -0.149 4.149 27 C -0.072 4.072 28 C -0.199 4.199 29 C -0.200 4.200 30 C -0.213 4.213 31 H 0.065 0.935 32 H 0.221 0.779 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.247 0.753 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.205 0.795 39 H 0.200 0.800 40 H 0.144 0.856 41 H 0.153 0.847 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.709 -7.233 -15.561 17.244 hybrid contribution 0.740 1.847 0.570 2.070 sum -0.969 -5.385 -14.991 15.958 Atomic orbital electron populations 1.69671 1.04977 1.25600 1.57170 1.24708 0.95399 0.97497 1.02833 0.86216 0.78871 0.84487 0.77177 1.20598 1.21993 1.21938 1.19203 0.90918 0.83781 1.43095 0.91024 1.42492 1.05873 0.99483 1.88094 1.20004 0.94097 0.86082 0.91772 0.92485 1.21594 0.98830 0.97428 0.82676 1.45909 1.50371 1.21734 1.17845 1.18221 0.78546 0.84236 0.84881 1.90731 1.57401 1.22901 1.72372 1.20016 1.02515 0.96223 0.95384 1.21350 0.97558 0.94768 0.95197 1.20980 0.99390 0.99768 0.94631 1.18196 0.95057 0.93729 0.90788 1.18991 1.08929 0.96348 0.97146 1.24044 0.97094 1.00013 0.90594 1.77226 1.17786 0.93655 1.23136 1.46222 1.39906 1.16805 1.15032 0.71425 1.22746 0.97959 0.99374 0.86849 1.20973 1.01885 0.96092 0.95993 1.21140 0.93998 0.99165 0.92935 1.23062 1.05959 0.95361 0.95528 1.22913 0.96678 1.03521 0.96881 1.22854 0.93494 1.01893 1.03052 0.93508 0.77890 0.91560 0.91749 0.75314 0.84883 0.85676 0.79548 0.79987 0.85562 0.84708 0.89595 0.86344 0.91291 0.91027 0.87937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.63 13.06 55.49 0.72 -24.90 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.90 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -5.78 8.16 -15.06 -0.12 -5.91 16 8 H 0.07 1.72 6.91 -52.48 -0.36 1.36 16 9 N -0.72 -15.53 3.08 -53.42 -0.16 -15.70 16 10 C 0.19 3.44 2.86 -67.93 -0.19 3.25 16 11 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 12 C 0.12 2.01 5.21 -4.04 -0.02 1.99 16 13 N -0.71 -11.74 5.34 -61.32 -0.33 -12.07 16 14 C 0.55 9.49 7.76 -12.42 -0.10 9.39 16 15 O -0.55 -10.95 16.33 5.29 0.09 -10.86 16 16 C -0.14 -2.02 5.88 -104.93 -0.62 -2.64 16 17 C -0.07 -0.92 9.52 -39.24 -0.37 -1.29 16 18 C -0.13 -1.46 9.54 -39.33 -0.38 -1.83 16 19 C 0.02 0.26 5.88 -104.81 -0.62 -0.36 16 20 C -0.20 -1.96 6.04 -105.34 -0.64 -2.59 16 21 C 0.07 0.65 11.42 -17.04 -0.19 0.46 16 22 N -0.30 -2.99 12.66 30.82 0.39 -2.60 16 23 N -0.47 -3.54 7.32 30.64 0.22 -3.32 16 24 H 0.44 1.84 8.96 -182.67 -1.64 0.20 16 25 C 0.08 0.61 11.38 -16.88 -0.19 0.42 16 26 C -0.13 -1.43 9.56 -39.33 -0.38 -1.80 16 27 C -0.05 -0.69 9.58 -39.24 -0.38 -1.07 16 28 C -0.18 -3.05 5.70 -90.62 -0.52 -3.56 16 29 C -0.16 -3.01 9.74 -26.69 -0.26 -3.27 16 30 C -0.18 -3.09 9.87 -26.69 -0.26 -3.35 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.39 9.28 7.80 -40.82 -0.32 8.96 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.41 6.71 6.15 -40.82 -0.25 6.46 16 36 H 0.13 1.73 6.39 -52.48 -0.34 1.40 16 37 H 0.13 1.11 7.00 -52.49 -0.37 0.74 16 38 H 0.19 1.25 7.33 -52.49 -0.39 0.86 16 39 H 0.18 0.87 7.27 -52.49 -0.38 0.49 16 40 H 0.13 1.03 7.03 -52.49 -0.37 0.66 16 41 H 0.14 1.72 7.64 -52.49 -0.40 1.32 16 42 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 43 H 0.12 2.62 6.68 -51.93 -0.35 2.28 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.10 2.01 6.22 -51.93 -0.32 1.68 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -31.14 384.73 -10.76 -41.91 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: -7.15 Total: 18.41 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -5.33 Total: -12.47 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.85 Total: -58.58 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.14 -10.76 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661177121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.456 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds