Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00204 * 2 1 4 4 H 1.48505 * 109.46913 * 239.99769 * 3 2 1 5 5 H 1.48500 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47113 * 119.99416 * 3 2 1 7 7 C 1.38820 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99538 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99846 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47181 * 187.33056 * 10 9 7 12 12 H 1.08994 * 109.99624 * 311.73545 * 11 10 9 13 13 C 1.54321 * 109.88213 * 190.64221 * 11 10 9 14 14 C 1.55161 * 102.94250 * 218.39275 * 13 11 10 15 15 C 1.54690 * 101.67648 * 35.33280 * 14 13 11 16 16 N 1.47022 * 109.88017 * 72.83474 * 11 10 9 17 17 C 1.34780 * 125.64431 * 298.31902 * 16 11 10 18 18 O 1.21590 * 120.00500 * 5.33812 * 17 16 11 19 19 C 1.47534 * 119.99412 * 185.33498 * 17 16 11 20 20 C 1.39586 * 120.22182 * 333.00488 * 19 17 16 21 21 C 1.37854 * 119.96335 * 180.02562 * 20 19 17 22 22 C 1.38569 * 120.41849 * 0.02562 * 21 20 19 23 23 C 1.37972 * 120.44178 * 359.74073 * 22 21 20 24 24 C 1.39237 * 120.01921 * 0.51487 * 23 22 21 25 25 C 1.48178 * 120.20036 * 179.76789 * 24 23 22 26 26 C 1.40979 * 126.25293 * 129.69723 * 25 24 23 27 27 N 1.30623 * 108.06702 * 180.02562 * 26 25 24 28 28 N 1.39997 * 108.57407 * 359.97438 * 27 26 25 29 29 H 0.97008 * 125.86699 * 179.97438 * 28 27 26 30 30 C 1.34702 * 108.27158 * 0.02562 * 28 27 26 31 31 H 0.96995 * 120.00188 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00141 * 359.97438 * 9 7 2 33 33 H 1.09006 * 109.47113 * 67.33342 * 10 9 7 34 34 H 1.08997 * 109.47247 * 307.33193 * 10 9 7 35 35 H 1.09002 * 110.71989 * 336.75468 * 13 11 10 36 36 H 1.09001 * 110.72407 * 100.02453 * 13 11 10 37 37 H 1.08991 * 111.00458 * 153.57955 * 14 13 11 38 38 H 1.09007 * 110.99749 * 277.39080 * 14 13 11 39 39 H 1.09002 * 110.39077 * 204.36877 * 15 14 13 40 40 H 1.09004 * 110.23548 * 82.11692 * 15 14 13 41 41 H 1.07996 * 120.01737 * 0.04686 * 20 19 17 42 42 H 1.08008 * 119.78793 * 180.02562 * 21 20 19 43 43 H 1.08001 * 119.77815 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.98788 * 180.27943 * 23 22 21 45 45 H 1.07997 * 125.97088 * 359.97438 * 26 25 24 46 46 H 1.07999 * 126.19839 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0740 -4.8139 -0.1835 12 1 0.2332 -4.7005 0.5007 13 6 1.7875 -6.1566 0.0798 14 6 1.1728 -7.0932 -0.9937 15 6 0.9837 -6.1235 -2.1840 16 7 0.5892 -4.8420 -1.5712 17 6 -0.1059 -3.8610 -2.1804 18 8 -0.2979 -2.8059 -1.6075 19 6 -0.6336 -4.0675 -3.5426 20 6 -0.0021 -4.9570 -4.4134 21 6 -0.4995 -5.1455 -5.6852 22 6 -1.6248 -4.4562 -6.1077 23 6 -2.2652 -3.5764 -5.2594 24 6 -1.7755 -3.3681 -3.9728 25 6 -2.4571 -2.4203 -3.0602 26 6 -2.8555 -2.6811 -1.7333 27 7 -3.4215 -1.6028 -1.2609 28 7 -3.4072 -0.6189 -2.2567 29 1 -3.7638 0.2794 -2.1732 30 6 -2.8144 -1.1341 -3.3510 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.5827 -3.7735 0.9489 34 1 2.7794 -3.6599 -0.8166 35 1 2.8631 -6.0568 -0.0658 36 1 1.5653 -6.5213 1.0827 37 1 1.8608 -7.8989 -1.2493 38 1 0.2140 -7.4916 -0.6617 39 1 0.1977 -6.4848 -2.8470 40 1 1.9200 -6.0103 -2.7305 41 1 0.8754 -5.4976 -4.0908 42 1 -0.0088 -5.8348 -6.3565 43 1 -2.0054 -4.6115 -7.1064 44 1 -3.1444 -3.0464 -5.5948 45 1 -2.7177 -3.6104 -1.2006 46 1 -2.6506 -0.6228 -4.2881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671308892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = 126.720432 kcal Electronic energy + Delta-G solvation = -30961.870786 eV Core-core repulsion = 27048.172114 eV Total energy + Delta-G solvation = -3913.698672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73970 -39.86440 -38.33539 -36.65532 -34.15417 -32.34589 -31.88283 -31.06865 -30.72558 -30.18013 -28.56641 -28.11377 -25.04803 -23.91595 -22.91609 -22.48510 -21.40029 -21.04589 -21.00725 -19.62725 -18.72823 -17.49588 -17.28209 -16.38226 -16.21899 -15.58556 -15.15352 -14.59057 -14.33559 -14.16858 -13.84835 -13.72347 -13.57333 -13.42247 -13.30162 -13.03312 -12.81185 -12.75522 -12.58192 -12.26698 -12.01897 -11.72453 -11.45737 -11.34689 -11.24900 -11.03183 -10.69046 -10.60452 -10.52984 -10.41125 -10.14314 -9.87872 -9.44997 -9.17715 -8.92810 -8.76716 -8.57667 -8.51542 -7.94167 -7.56246 -6.43786 -5.34277 -2.61072 1.16368 1.42702 2.55482 3.29372 3.46579 3.49079 3.58601 3.61203 3.61736 3.63111 4.16797 4.65963 4.69744 4.85685 4.97965 5.01696 5.03723 5.06053 5.17845 5.32808 5.43775 5.44751 5.53588 5.58753 5.66288 5.69310 5.81916 5.89018 5.93244 5.98149 6.06041 6.08284 6.16749 6.20636 6.32520 6.33497 6.47039 6.53711 6.58554 6.73900 6.77556 6.93984 7.02117 7.15240 7.20092 7.81678 7.96651 8.14432 8.28800 8.75248 9.06321 9.94406 10.62114 11.04823 11.83879 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008316 B = 0.006056 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.359582 B = 4622.628317 C = 6688.117287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.007 4.007 3 Si 0.889 3.111 4 H -0.292 1.292 5 H -0.296 1.296 6 H -0.291 1.291 7 C -0.236 4.236 8 H 0.056 0.944 9 N -0.716 5.716 10 C 0.146 3.854 11 C 0.133 3.867 12 H 0.071 0.929 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.094 3.906 16 N -0.615 5.615 17 C 0.539 3.461 18 O -0.424 6.424 19 C -0.110 4.110 20 C -0.103 4.103 21 C -0.140 4.140 22 C -0.103 4.103 23 C -0.127 4.127 24 C 0.060 3.940 25 C -0.199 4.199 26 C 0.103 3.897 27 N -0.277 5.277 28 N -0.467 5.467 29 H 0.435 0.565 30 C 0.078 3.922 31 H 0.244 0.756 32 H 0.402 0.598 33 H 0.013 0.987 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.137 0.863 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.166 0.834 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.975 -15.455 -11.637 19.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.204 4.204 3 Si 0.722 3.278 4 H -0.220 1.220 5 H -0.222 1.222 6 H -0.218 1.218 7 C -0.368 4.368 8 H 0.074 0.926 9 N -0.369 5.369 10 C 0.016 3.984 11 C 0.030 3.970 12 H 0.089 0.911 13 C -0.163 4.163 14 C -0.172 4.172 15 C -0.029 4.029 16 N -0.353 5.353 17 C 0.325 3.675 18 O -0.291 6.291 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.159 4.159 22 C -0.121 4.121 23 C -0.145 4.145 24 C 0.057 3.943 25 C -0.211 4.211 26 C -0.085 4.085 27 N -0.097 5.097 28 N -0.172 5.172 29 H 0.278 0.722 30 C -0.070 4.070 31 H 0.054 0.946 32 H 0.246 0.754 33 H 0.030 0.970 34 H 0.033 0.967 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.154 0.846 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.183 0.817 46 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.666 -14.077 -10.317 18.349 hybrid contribution 0.995 1.110 -0.860 1.721 sum -4.672 -12.967 -11.177 17.745 Atomic orbital electron populations 1.69769 1.04215 1.23885 1.56949 1.24630 0.95311 0.96571 1.03894 0.86548 0.78600 0.85216 0.77439 1.21985 1.22184 1.21787 1.19019 0.90224 0.84880 1.42661 0.92641 1.42969 1.07291 0.98534 1.88150 1.20948 0.93251 0.87026 0.97136 1.21840 0.97073 0.95277 0.82818 0.91096 1.22631 1.00448 0.93945 0.99276 1.22759 1.01469 0.97324 0.95673 1.22531 0.99640 0.84586 0.96181 1.48360 1.56529 1.17080 1.13363 1.17973 0.79990 0.83739 0.85772 1.91015 1.52722 1.22120 1.63262 1.20096 0.96767 0.99238 0.95240 1.21799 0.99850 0.96767 0.93714 1.21015 0.97525 1.01250 0.96060 1.21135 0.95586 0.96188 0.99199 1.21129 1.00521 0.99687 0.93155 1.18084 0.91571 0.92449 0.92160 1.18485 1.12071 0.94782 0.95734 1.23417 0.95844 0.96996 0.92266 1.77147 1.24563 0.97010 1.11011 1.45923 1.47921 1.14033 1.09317 0.72232 1.22257 0.97553 0.94257 0.92951 0.94631 0.75407 0.96957 0.96658 0.90521 0.90342 0.90313 0.90812 0.90306 0.91874 0.84595 0.86136 0.86179 0.85809 0.81726 0.81576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.84 13.06 55.49 0.72 -28.12 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.89 24.13 29.55 -169.99 -5.02 19.10 16 4 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 5 H -0.30 -8.04 7.11 56.52 0.40 -7.63 16 6 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 7 C -0.24 -7.21 9.99 -15.06 -0.15 -7.36 16 8 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 9 N -0.72 -19.88 4.10 -59.90 -0.25 -20.12 16 10 C 0.15 3.21 5.63 -4.04 -0.02 3.19 16 11 C 0.13 2.30 3.11 -66.95 -0.21 2.09 16 12 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 13 C -0.12 -1.51 6.47 -24.90 -0.16 -1.67 16 14 C -0.13 -1.30 7.07 -24.70 -0.17 -1.48 16 15 C 0.09 1.09 5.02 -2.65 -0.01 1.08 16 16 N -0.61 -10.18 3.07 -164.37 -0.50 -10.69 16 17 C 0.54 10.51 6.80 -12.47 -0.08 10.42 16 18 O -0.42 -10.31 9.36 5.29 0.05 -10.26 16 19 C -0.11 -1.80 5.74 -104.70 -0.60 -2.40 16 20 C -0.10 -1.34 7.93 -39.22 -0.31 -1.65 16 21 C -0.14 -1.52 10.02 -39.60 -0.40 -1.92 16 22 C -0.10 -1.10 10.02 -39.56 -0.40 -1.49 16 23 C -0.13 -1.58 9.70 -39.31 -0.38 -1.96 16 24 C 0.06 0.94 5.78 -104.54 -0.60 0.34 16 25 C -0.20 -3.52 4.41 -105.36 -0.46 -3.98 16 26 C 0.10 2.01 9.36 -17.03 -0.16 1.85 16 27 N -0.28 -5.64 12.66 30.82 0.39 -5.25 16 28 N -0.47 -8.00 7.32 30.65 0.22 -7.78 16 29 H 0.44 6.10 8.96 -182.67 -1.64 4.46 16 30 C 0.08 1.28 11.87 -16.88 -0.20 1.08 16 31 H 0.24 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.40 11.83 4.80 -40.97 -0.20 11.63 16 33 H 0.01 0.28 8.12 -51.93 -0.42 -0.14 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.90 7.85 -51.93 -0.41 0.50 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 39 H 0.08 0.81 6.02 -51.93 -0.31 0.50 16 40 H 0.06 0.69 7.37 -51.93 -0.38 0.31 16 41 H 0.14 1.55 4.50 -52.49 -0.24 1.31 16 42 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 45 H 0.17 3.07 7.91 -52.49 -0.42 2.66 16 46 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -38.44 369.48 -10.60 -49.04 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -7.36 Total: 12.67 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -4.43 Total: -4.17 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: 0.59 Total: -71.95 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.05 Total: -10.26 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.02 Total: 19.10 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.44 -10.60 -49.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671308892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.763 kcal (2) G-P(sol) polarization free energy of solvation -38.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds