Wall clock time and date at job start Sat Apr 11 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 120.00204 * 2 1 4 4 H 1.48505 * 109.46913 * 239.99769 * 3 2 1 5 5 H 1.48500 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47113 * 119.99416 * 3 2 1 7 7 C 1.38820 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99538 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99988 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99846 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47181 * 187.33056 * 10 9 7 12 12 H 1.08994 * 109.99624 * 311.73545 * 11 10 9 13 13 C 1.54321 * 109.88213 * 190.64221 * 11 10 9 14 14 C 1.55161 * 102.94250 * 218.39275 * 13 11 10 15 15 C 1.54690 * 101.67648 * 35.33280 * 14 13 11 16 16 N 1.47022 * 109.88017 * 72.83474 * 11 10 9 17 17 C 1.34780 * 125.64431 * 298.31902 * 16 11 10 18 18 O 1.21590 * 120.00500 * 5.33812 * 17 16 11 19 19 C 1.47534 * 119.99412 * 185.33498 * 17 16 11 20 20 C 1.39586 * 120.22182 * 333.00488 * 19 17 16 21 21 C 1.37854 * 119.96335 * 180.02562 * 20 19 17 22 22 C 1.38569 * 120.41849 * 0.02562 * 21 20 19 23 23 C 1.37972 * 120.44178 * 359.74073 * 22 21 20 24 24 C 1.39237 * 120.01921 * 0.51487 * 23 22 21 25 25 C 1.48178 * 120.20036 * 179.76789 * 24 23 22 26 26 C 1.40979 * 126.25293 * 129.69723 * 25 24 23 27 27 N 1.30623 * 108.06702 * 180.02562 * 26 25 24 28 28 N 1.39997 * 108.57407 * 359.97438 * 27 26 25 29 29 H 0.97008 * 125.86699 * 179.97438 * 28 27 26 30 30 C 1.34702 * 108.27158 * 0.02562 * 28 27 26 31 31 H 0.96995 * 120.00188 * 0.02562 * 1 2 3 32 32 H 0.96996 * 120.00141 * 359.97438 * 9 7 2 33 33 H 1.09006 * 109.47113 * 67.33342 * 10 9 7 34 34 H 1.08997 * 109.47247 * 307.33193 * 10 9 7 35 35 H 1.09002 * 110.71989 * 336.75468 * 13 11 10 36 36 H 1.09001 * 110.72407 * 100.02453 * 13 11 10 37 37 H 1.08991 * 111.00458 * 153.57955 * 14 13 11 38 38 H 1.09007 * 110.99749 * 277.39080 * 14 13 11 39 39 H 1.09002 * 110.39077 * 204.36877 * 15 14 13 40 40 H 1.09004 * 110.23548 * 82.11692 * 15 14 13 41 41 H 1.07996 * 120.01737 * 0.04686 * 20 19 17 42 42 H 1.08008 * 119.78793 * 180.02562 * 21 20 19 43 43 H 1.08001 * 119.77815 * 179.97438 * 22 21 20 44 44 H 1.08001 * 119.98788 * 180.27943 * 23 22 21 45 45 H 1.07997 * 125.97088 * 359.97438 * 26 25 24 46 46 H 1.07999 * 126.19839 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0740 -4.8139 -0.1835 12 1 0.2332 -4.7005 0.5007 13 6 1.7875 -6.1566 0.0798 14 6 1.1728 -7.0932 -0.9937 15 6 0.9837 -6.1235 -2.1840 16 7 0.5892 -4.8420 -1.5712 17 6 -0.1059 -3.8610 -2.1804 18 8 -0.2979 -2.8059 -1.6075 19 6 -0.6336 -4.0675 -3.5426 20 6 -0.0021 -4.9570 -4.4134 21 6 -0.4995 -5.1455 -5.6852 22 6 -1.6248 -4.4562 -6.1077 23 6 -2.2652 -3.5764 -5.2594 24 6 -1.7755 -3.3681 -3.9728 25 6 -2.4571 -2.4203 -3.0602 26 6 -2.8555 -2.6811 -1.7333 27 7 -3.4215 -1.6028 -1.2609 28 7 -3.4072 -0.6189 -2.2567 29 1 -3.7638 0.2794 -2.1732 30 6 -2.8144 -1.1341 -3.3510 31 1 -0.4850 0.8400 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.5827 -3.7735 0.9489 34 1 2.7794 -3.6599 -0.8166 35 1 2.8631 -6.0568 -0.0658 36 1 1.5653 -6.5213 1.0827 37 1 1.8608 -7.8989 -1.2493 38 1 0.2140 -7.4916 -0.6617 39 1 0.1977 -6.4848 -2.8470 40 1 1.9200 -6.0103 -2.7305 41 1 0.8754 -5.4976 -4.0908 42 1 -0.0088 -5.8348 -6.3565 43 1 -2.0054 -4.6115 -7.1064 44 1 -3.1444 -3.0464 -5.5948 45 1 -2.7177 -3.6104 -1.2006 46 1 -2.6506 -0.6228 -4.2881 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671308892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:04 Heat of formation + Delta-G solvation = 100.169705 kcal Electronic energy + Delta-G solvation = -30963.022112 eV Core-core repulsion = 27048.172114 eV Total energy + Delta-G solvation = -3914.849998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.03118 -41.13961 -39.40073 -37.97894 -36.14036 -33.61698 -33.27712 -32.68538 -32.08334 -31.33046 -30.13409 -29.30594 -26.69279 -25.31053 -24.22800 -23.89876 -22.83224 -22.34414 -22.09918 -20.88499 -20.04141 -19.15245 -18.72117 -17.86969 -17.41285 -16.73083 -16.58596 -16.24075 -15.76070 -15.48487 -15.20112 -15.08100 -15.05050 -14.69794 -14.68751 -14.50264 -14.16403 -13.88471 -13.83756 -13.57597 -13.28430 -13.07505 -13.03393 -12.84916 -12.68047 -12.48276 -12.32376 -12.20245 -11.93993 -11.59053 -11.53345 -11.49529 -11.41940 -10.83087 -10.54554 -10.26964 -9.93588 -9.71462 -9.31887 -8.80491 -8.65024 -7.69208 -4.96390 0.11561 0.46606 1.22270 1.37956 1.42189 1.47172 2.04965 2.21449 2.24856 2.28768 2.60394 3.06326 3.53758 3.63647 3.73874 3.87287 3.94444 4.05823 4.11280 4.13274 4.30770 4.33244 4.35274 4.46330 4.51526 4.63892 4.65054 4.72049 4.77608 4.87157 4.88002 4.95761 4.99512 5.03773 5.11996 5.20364 5.22376 5.22833 5.44238 5.50261 5.52111 5.62314 5.64704 5.78925 5.83572 6.13540 6.41990 6.59472 6.86194 6.89686 7.48213 7.70363 8.44504 8.77963 9.47756 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008316 B = 0.006056 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3366.359582 B = 4622.628317 C = 6688.117287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.066 4.066 3 Si 0.957 3.043 4 H -0.288 1.288 5 H -0.297 1.297 6 H -0.282 1.282 7 C -0.248 4.248 8 H 0.054 0.946 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.135 3.865 12 H 0.043 0.957 13 C -0.115 4.115 14 C -0.119 4.119 15 C 0.086 3.914 16 N -0.617 5.617 17 C 0.527 3.473 18 O -0.486 6.486 19 C -0.139 4.139 20 C -0.104 4.104 21 C -0.130 4.130 22 C -0.091 4.091 23 C -0.125 4.125 24 C 0.033 3.967 25 C -0.206 4.206 26 C 0.091 3.909 27 N -0.322 5.322 28 N -0.465 5.465 29 H 0.445 0.555 30 C 0.076 3.924 31 H 0.235 0.765 32 H 0.392 0.608 33 H 0.015 0.985 34 H 0.006 0.994 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.151 0.849 42 H 0.159 0.841 43 H 0.159 0.841 44 H 0.142 0.858 45 H 0.155 0.845 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 -17.972 -14.794 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.260 4.260 3 Si 0.787 3.213 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.072 0.928 9 N -0.381 5.381 10 C 0.016 3.984 11 C 0.031 3.969 12 H 0.061 0.939 13 C -0.154 4.154 14 C -0.157 4.157 15 C -0.035 4.035 16 N -0.353 5.353 17 C 0.315 3.685 18 O -0.358 6.358 19 C -0.142 4.142 20 C -0.122 4.122 21 C -0.147 4.147 22 C -0.109 4.109 23 C -0.143 4.143 24 C 0.030 3.970 25 C -0.218 4.218 26 C -0.097 4.097 27 N -0.144 5.144 28 N -0.172 5.172 29 H 0.289 0.711 30 C -0.073 4.073 31 H 0.044 0.956 32 H 0.235 0.765 33 H 0.032 0.968 34 H 0.024 0.976 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.168 0.832 42 H 0.177 0.823 43 H 0.177 0.823 44 H 0.160 0.840 45 H 0.172 0.828 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.404 -16.674 -13.484 21.891 hybrid contribution 0.662 1.794 0.056 1.913 sum -3.742 -14.880 -13.428 20.389 Atomic orbital electron populations 1.70004 1.05530 1.23813 1.58088 1.25394 0.96291 0.99821 1.04542 0.85480 0.77274 0.80905 0.77601 1.21480 1.22374 1.20838 1.19370 0.90316 0.86444 1.41934 0.92848 1.43198 1.07195 0.99709 1.88004 1.21118 0.93965 0.86841 0.96476 1.21754 0.95413 0.96337 0.83393 0.93870 1.22618 1.00341 0.91192 1.01215 1.22777 1.02509 0.97051 0.93316 1.22867 1.00690 0.82625 0.97335 1.48475 1.55432 1.18352 1.13081 1.18685 0.79423 0.83406 0.86943 1.90964 1.55236 1.24674 1.64941 1.20027 0.98173 1.01734 0.94311 1.21989 1.00050 0.95995 0.94190 1.21473 0.97076 1.00860 0.95316 1.21611 0.94723 0.94262 1.00304 1.21367 1.01085 1.00074 0.91824 1.18231 0.92241 0.93074 0.93426 1.18800 1.11854 0.95842 0.95291 1.23399 0.96230 0.96569 0.93496 1.77013 1.26342 0.98154 1.12866 1.45915 1.48059 1.14130 1.09080 0.71059 1.22859 0.96635 0.94060 0.93729 0.95603 0.76508 0.96753 0.97576 0.89734 0.88817 0.86563 0.90206 0.88563 0.90532 0.83175 0.82291 0.82313 0.83996 0.82812 0.77996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -62.01 13.06 21.65 0.28 -61.73 16 2 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 3 Si 0.96 51.18 29.55 68.60 2.03 53.21 16 4 H -0.29 -15.03 7.11 99.48 0.71 -14.32 16 5 H -0.30 -15.85 7.11 99.48 0.71 -15.14 16 6 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 7 C -0.25 -15.72 9.99 84.04 0.84 -14.88 16 8 H 0.05 3.31 7.83 -2.91 -0.02 3.29 16 9 N -0.73 -42.57 4.10 -343.44 -1.41 -43.98 16 10 C 0.14 6.60 5.63 86.38 0.49 7.09 16 11 C 0.14 4.79 3.11 45.34 0.14 4.93 16 12 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 13 C -0.12 -2.58 6.47 31.78 0.21 -2.37 16 14 C -0.12 -1.89 7.07 31.91 0.23 -1.66 16 15 C 0.09 1.80 5.02 86.78 0.44 2.23 16 16 N -0.62 -20.64 3.07 -792.20 -2.43 -23.07 16 17 C 0.53 21.42 6.80 86.69 0.59 22.01 16 18 O -0.49 -25.26 9.36 -4.00 -0.04 -25.30 16 19 C -0.14 -4.54 5.74 -19.91 -0.11 -4.66 16 20 C -0.10 -2.43 7.93 22.50 0.18 -2.25 16 21 C -0.13 -2.20 10.02 22.26 0.22 -1.98 16 22 C -0.09 -1.53 10.02 22.29 0.22 -1.31 16 23 C -0.13 -2.82 9.70 22.45 0.22 -2.60 16 24 C 0.03 1.03 5.78 -19.81 -0.11 0.91 16 25 C -0.21 -7.62 4.41 -20.34 -0.09 -7.71 16 26 C 0.09 3.83 9.36 85.54 0.80 4.63 16 27 N -0.32 -14.19 12.66 -56.40 -0.71 -14.91 16 28 N -0.46 -16.86 7.32 -56.95 -0.42 -17.27 16 29 H 0.44 13.25 8.96 -213.38 -1.91 11.33 16 30 C 0.08 2.53 11.87 83.87 1.00 3.53 16 31 H 0.24 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.39 24.67 4.80 -95.07 -0.46 24.21 16 33 H 0.01 0.67 8.12 -2.38 -0.02 0.65 16 34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.08 1.79 7.85 -2.39 -0.02 1.77 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.10 1.70 6.02 -2.39 -0.01 1.68 16 40 H 0.08 1.42 7.37 -2.38 -0.02 1.40 16 41 H 0.15 2.94 4.50 -2.91 -0.01 2.92 16 42 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 43 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 45 H 0.15 6.49 7.91 -2.91 -0.02 6.47 16 46 H 0.20 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -90.82 369.48 1.67 -89.14 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -1.34 Total: 41.77 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 5.71 Total: 2.13 kcal Atomic # 7 Polarization: -156.27 SS G_CDS: -4.69 Total: -160.95 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.04 Total: -25.30 kcal Atomic # 14 Polarization: 51.18 SS G_CDS: 2.03 Total: 53.21 kcal Total: -90.82 1.67 -89.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671308892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.314 kcal (2) G-P(sol) polarization free energy of solvation -90.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds