Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99992 * 2 1 4 4 H 1.48494 * 109.47105 * 270.00028 * 3 2 1 5 5 H 1.48501 * 109.47201 * 29.99803 * 3 2 1 6 6 H 1.48502 * 109.47055 * 149.99671 * 3 2 1 7 7 C 1.38807 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00301 * 359.97438 * 7 2 1 9 9 N 1.36943 * 120.00016 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99692 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46929 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.49558 * 304.93769 * 11 10 9 13 13 C 1.53044 * 109.52763 * 184.85808 * 11 10 9 14 14 C 1.53034 * 109.53852 * 178.66559 * 13 11 10 15 15 C 1.52766 * 109.38509 * 61.23918 * 14 13 11 16 16 N 1.46932 * 109.00753 * 305.58750 * 15 14 13 17 17 C 1.34777 * 120.62897 * 233.58414 * 16 15 14 18 18 O 1.21542 * 119.99972 * 179.97438 * 17 16 15 19 19 C 1.47925 * 119.99955 * 359.97438 * 17 16 15 20 20 C 1.38937 * 119.84468 * 158.53223 * 19 17 16 21 21 C 1.40644 * 117.38806 * 179.97438 * 20 19 17 22 22 C 1.40256 * 122.04314 * 179.97438 * 21 20 19 23 23 C 1.36262 * 119.47569 * 180.02562 * 22 21 20 24 24 C 1.39321 * 120.87607 * 0.02796 * 23 22 21 25 25 C 1.36222 * 121.15783 * 0.23080 * 24 23 22 26 26 C 1.40340 * 119.68052 * 359.49764 * 25 24 23 27 27 N 1.33812 * 121.61938 * 180.22275 * 26 25 24 28 28 N 1.28445 * 121.68759 * 180.29211 * 27 26 25 29 29 C 1.46918 * 118.73809 * 53.30428 * 16 15 14 30 30 H 0.97001 * 119.99945 * 0.02562 * 1 2 3 31 31 H 0.96990 * 119.99844 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.47112 * 60.00496 * 10 9 7 33 33 H 1.08997 * 109.47197 * 300.00181 * 10 9 7 34 34 H 1.09005 * 109.45395 * 298.68549 * 13 11 10 35 35 H 1.08995 * 109.45576 * 58.65617 * 13 11 10 36 36 H 1.09007 * 109.49801 * 181.31238 * 14 13 11 37 37 H 1.09001 * 109.50182 * 301.40857 * 14 13 11 38 38 H 1.08997 * 109.50753 * 185.70539 * 15 14 13 39 39 H 1.08997 * 109.42884 * 65.42024 * 15 14 13 40 40 H 1.08001 * 121.30105 * 0.02562 * 20 19 17 41 41 H 1.08005 * 120.25840 * 0.04967 * 22 21 20 42 42 H 1.08000 * 119.56262 * 180.02562 * 23 22 21 43 43 H 1.08007 * 119.42068 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.16194 * 179.74580 * 25 24 23 45 45 H 1.09002 * 109.58516 * 66.43167 * 29 16 15 46 46 H 1.08994 * 109.58749 * 186.71197 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1913 0.0009 12 1 5.8665 -1.5471 -0.8420 13 6 6.3819 -3.5110 -0.1201 14 6 7.8857 -3.2291 -0.1538 15 6 8.3027 -2.5453 1.1470 16 7 7.4692 -1.3523 1.3491 17 6 8.0347 -0.1475 1.5615 18 8 7.3342 0.8319 1.7269 19 6 9.5078 -0.0172 1.5935 20 6 10.0977 1.2196 1.3640 21 6 11.5020 1.2847 1.4071 22 6 12.1984 2.4825 1.1894 23 6 13.5600 2.4856 1.2430 24 6 14.2677 1.3157 1.5103 25 6 13.6228 0.1345 1.7213 26 6 12.2207 0.0912 1.6802 27 7 11.5476 -1.0468 1.8862 28 7 10.2645 -1.0890 1.8434 29 6 6.0077 -1.4967 1.3090 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 3.8485 -3.0434 -0.8882 33 1 3.8491 -3.0415 0.8918 34 1 6.1503 -4.1448 0.7360 35 1 6.0871 -4.0189 -1.0383 36 1 8.4294 -4.1675 -0.2634 37 1 8.1145 -2.5752 -0.9953 38 1 9.3508 -2.2525 1.0846 39 1 8.1626 -3.2343 1.9799 40 1 9.5012 2.0968 1.1613 41 1 11.6598 3.3952 0.9813 42 1 14.0977 3.4072 1.0759 43 1 15.3468 1.3449 1.5469 44 1 14.1877 -0.7636 1.9233 45 1 5.6766 -2.0984 2.1554 46 1 5.5418 -0.5124 1.3560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690418150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = 49.832812 kcal Electronic energy + Delta-G solvation = -28935.911860 eV Core-core repulsion = 25018.879091 eV Total energy + Delta-G solvation = -3917.032769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.67710 -41.21163 -39.11120 -38.77430 -36.80935 -34.93416 -34.57372 -33.35903 -32.85060 -31.86088 -31.46329 -27.80507 -27.07258 -26.43415 -25.35580 -24.55148 -23.53116 -22.70410 -22.16735 -20.82095 -19.83394 -19.72526 -19.28202 -17.90892 -17.43564 -16.99778 -16.85255 -16.68554 -16.20092 -15.91007 -15.76219 -15.62460 -15.45124 -15.10862 -15.01439 -14.58253 -14.50246 -14.32120 -14.21852 -13.86115 -13.60980 -13.45532 -13.35651 -13.04104 -12.97061 -12.66322 -12.27976 -12.26009 -12.03083 -11.97678 -11.92292 -11.85629 -11.68873 -11.44224 -11.12367 -11.03345 -10.73872 -10.36850 -9.82578 -9.47325 -9.32611 -8.06926 -5.39022 -1.22317 -0.82071 0.60403 1.15067 1.32415 1.35499 1.42767 1.65318 1.91453 2.42883 2.59092 2.76300 3.09846 3.16649 3.24808 3.35192 3.49950 3.63976 3.67382 3.81960 3.86947 3.97363 4.09474 4.10421 4.16331 4.28627 4.38554 4.43503 4.47883 4.57227 4.67115 4.71806 4.74385 4.88490 4.89700 4.98451 5.01191 5.03398 5.08781 5.18361 5.22888 5.29446 5.30975 5.43305 5.48263 5.67758 5.72694 6.16889 6.17997 6.77942 7.03612 7.26111 7.80832 7.97839 9.14581 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016473 B = 0.002728 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.302228 B =10260.250506 C =11668.475876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.058 4.058 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.266 1.266 7 C -0.230 4.230 8 H 0.064 0.936 9 N -0.762 5.762 10 C 0.161 3.839 11 C -0.097 4.097 12 H 0.062 0.938 13 C -0.106 4.106 14 C -0.126 4.126 15 C 0.076 3.924 16 N -0.585 5.585 17 C 0.566 3.434 18 O -0.573 6.573 19 C -0.024 4.024 20 C -0.032 4.032 21 C -0.080 4.080 22 C -0.106 4.106 23 C -0.080 4.080 24 C -0.072 4.072 25 C -0.095 4.095 26 C 0.056 3.944 27 N -0.221 5.221 28 N -0.198 5.198 29 C 0.119 3.881 30 H 0.258 0.742 31 H 0.362 0.638 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.134 0.866 39 H 0.083 0.917 40 H 0.169 0.831 41 H 0.160 0.840 42 H 0.174 0.826 43 H 0.178 0.822 44 H 0.161 0.839 45 H 0.080 0.920 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.033 0.462 1.897 39.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.250 4.250 3 Si 0.773 3.227 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.191 1.191 7 C -0.361 4.361 8 H 0.082 0.918 9 N -0.407 5.407 10 C 0.035 3.965 11 C -0.117 4.117 12 H 0.080 0.920 13 C -0.144 4.144 14 C -0.164 4.164 15 C -0.046 4.046 16 N -0.315 5.315 17 C 0.352 3.648 18 O -0.452 6.452 19 C -0.157 4.157 20 C -0.062 4.062 21 C -0.089 4.089 22 C -0.124 4.124 23 C -0.100 4.100 24 C -0.092 4.092 25 C -0.116 4.116 26 C -0.071 4.071 27 N -0.076 5.076 28 N -0.055 5.055 29 C -0.003 4.003 30 H 0.067 0.933 31 H 0.195 0.805 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.125 0.875 37 H 0.073 0.927 38 H 0.150 0.850 39 H 0.102 0.898 40 H 0.187 0.813 41 H 0.178 0.822 42 H 0.192 0.808 43 H 0.195 0.805 44 H 0.179 0.821 45 H 0.098 0.902 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 38.444 -0.690 2.312 38.520 hybrid contribution -0.899 2.510 -0.210 2.674 sum 37.546 1.820 2.101 37.648 Atomic orbital electron populations 1.69855 1.06735 1.26549 1.59922 1.25372 0.96027 1.00656 1.02954 0.85562 0.78370 0.80704 0.78091 1.20302 1.21813 1.19131 1.19077 0.82584 0.93619 1.40795 0.91767 1.42858 1.02708 1.04243 1.90941 1.20828 0.89288 0.87289 0.99081 1.21603 0.94711 0.98818 0.96575 0.91964 1.21519 0.94408 0.94764 1.03744 1.21856 0.95973 1.01864 0.96754 1.22895 0.97642 0.85462 0.98576 1.48118 1.07369 1.08146 1.67819 1.17996 0.86364 0.83262 0.77143 1.90813 1.63418 1.38548 1.52414 1.22187 0.94704 0.93266 1.05500 1.22713 0.94729 0.98010 0.90723 1.19045 0.92819 0.96612 1.00394 1.21393 0.95894 0.96109 0.99038 1.21679 0.93399 1.00482 0.94401 1.21657 1.03028 0.90866 0.93607 1.21128 0.89568 1.01328 0.99539 1.20821 0.97563 0.90223 0.98513 1.73773 1.00475 1.23893 1.09501 1.73066 1.00084 1.24070 1.08329 1.21642 0.78735 1.01395 0.98560 0.93278 0.80538 0.94547 0.94888 0.90256 0.90144 0.87502 0.92652 0.84968 0.89849 0.81305 0.82231 0.80820 0.80479 0.82130 0.90218 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.94 13.97 21.65 0.30 -64.63 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.94 49.44 27.74 68.60 1.90 51.34 16 4 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.29 -15.22 7.11 99.48 0.71 -14.51 16 6 H -0.27 -13.52 6.52 99.48 0.65 -12.87 16 7 C -0.23 -13.71 10.47 84.03 0.88 -12.83 16 8 H 0.06 4.10 8.06 -2.91 -0.02 4.08 16 9 N -0.76 -38.04 5.18 -343.45 -1.78 -39.82 16 10 C 0.16 6.30 5.66 86.38 0.49 6.79 16 11 C -0.10 -3.06 2.37 -10.71 -0.03 -3.09 16 12 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 13 C -0.11 -2.40 5.17 30.62 0.16 -2.25 16 14 C -0.13 -2.48 6.06 30.53 0.19 -2.29 16 15 C 0.08 1.74 5.96 86.22 0.51 2.25 16 16 N -0.58 -17.64 2.98 -823.06 -2.45 -20.09 16 17 C 0.57 18.78 7.61 86.81 0.66 19.45 16 18 O -0.57 -23.21 15.97 -3.85 -0.06 -23.27 16 19 C -0.02 -0.66 6.52 41.62 0.27 -0.39 16 20 C -0.03 -0.71 9.51 23.03 0.22 -0.49 16 21 C -0.08 -1.37 5.75 -21.28 -0.12 -1.50 16 22 C -0.11 -0.99 9.81 22.30 0.22 -0.77 16 23 C -0.08 -0.31 9.96 22.07 0.22 -0.09 16 24 C -0.07 -0.27 9.94 22.06 0.22 -0.05 16 25 C -0.09 -0.93 10.00 22.31 0.22 -0.71 16 26 C 0.06 1.00 6.69 40.28 0.27 1.27 16 27 N -0.22 -5.01 11.55 -51.92 -0.60 -5.61 16 28 N -0.20 -5.00 7.51 -48.74 -0.37 -5.37 16 29 C 0.12 4.03 5.52 86.36 0.48 4.51 16 30 H 0.26 16.30 8.31 -92.71 -0.77 15.53 16 31 H 0.36 18.06 4.76 -92.72 -0.44 17.62 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.13 3.07 3.97 -92.91 -0.37 2.71 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.17 3.41 7.84 -2.91 -0.02 3.39 16 41 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 42 H 0.17 -0.52 8.06 -2.91 -0.02 -0.55 16 43 H 0.18 -0.64 8.06 -2.91 -0.02 -0.66 16 44 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 45 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 46 H 0.06 2.54 6.21 -2.39 -0.01 2.53 16 Total: -1.00 -82.51 372.76 2.42 -80.08 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.15 Total: 20.70 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.32 Total: 6.67 kcal Atomic # 7 Polarization: -130.63 SS G_CDS: -4.89 Total: -135.52 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 1.90 Total: 51.34 kcal Total: -82.51 2.42 -80.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690418150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.916 kcal (2) G-P(sol) polarization free energy of solvation -82.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds