Wall clock time and date at job start Sat Apr 11 2020 06:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99789 * 2 1 4 4 H 1.48501 * 109.46963 * 274.22057 * 3 2 1 5 5 H 1.48496 * 109.47108 * 34.22344 * 3 2 1 6 6 H 1.48502 * 109.47074 * 154.22333 * 3 2 1 7 7 C 1.38811 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99477 * 337.35760 * 7 2 1 9 9 N 1.36933 * 120.00195 * 157.35378 * 7 2 1 10 10 C 1.47421 * 125.64896 * 150.17644 * 9 7 2 11 11 C 1.54912 * 104.83237 * 155.90491 * 10 9 7 12 12 C 1.55153 * 101.61336 * 36.99588 * 11 10 9 13 13 H 1.09001 * 110.72739 * 82.87982 * 12 11 10 14 14 C 1.53007 * 110.72050 * 206.15188 * 12 11 10 15 15 C 1.52994 * 109.47406 * 184.99872 * 14 12 11 16 16 N 1.46505 * 109.47148 * 179.97438 * 15 14 12 17 17 C 1.34776 * 119.99991 * 180.02562 * 16 15 14 18 18 O 1.21550 * 119.99996 * 359.97438 * 17 16 15 19 19 C 1.47910 * 119.99909 * 179.97438 * 17 16 15 20 20 N 1.32373 * 120.63577 * 5.91579 * 19 17 16 21 21 N 1.28095 * 123.18057 * 179.97438 * 20 19 17 22 22 C 1.31802 * 123.49481 * 0.02562 * 21 20 19 23 23 C 1.40405 * 119.13948 * 359.97438 * 22 21 20 24 24 C 1.40230 * 122.73744 * 179.97438 * 23 22 21 25 25 C 1.36250 * 119.36951 * 180.02562 * 24 23 22 26 26 C 1.39381 * 121.07512 * 0.02562 * 25 24 23 27 27 C 1.36359 * 121.08598 * 0.02562 * 26 25 24 28 28 C 1.39834 * 119.42162 * 359.73974 * 27 26 25 29 29 C 1.47026 * 125.64836 * 330.22204 * 9 7 2 30 30 H 0.97006 * 119.99897 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.36465 * 37.07264 * 10 9 7 32 32 H 1.08997 * 110.46261 * 274.79574 * 10 9 7 33 33 H 1.09001 * 111.00268 * 155.08072 * 11 10 9 34 34 H 1.08993 * 111.00780 * 278.89678 * 11 10 9 35 35 H 1.08999 * 109.46905 * 305.00064 * 14 12 11 36 36 H 1.09002 * 109.46984 * 64.99337 * 14 12 11 37 37 H 1.08999 * 109.47245 * 299.99983 * 15 14 12 38 38 H 1.09002 * 109.47486 * 59.99772 * 15 14 12 39 39 H 0.96996 * 119.99672 * 359.97438 * 16 15 14 40 40 H 1.07997 * 120.42873 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.31254 * 0.04537 * 24 23 22 42 42 H 1.08005 * 119.46327 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.45233 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.28726 * 179.97438 * 27 26 25 45 45 H 1.09004 * 109.87913 * 300.44146 * 29 9 7 46 46 H 1.09001 * 109.88371 * 61.60247 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4084 2.0980 -1.3963 5 1 1.4951 2.6252 0.7874 6 1 3.5895 1.4161 0.6089 7 6 2.0103 -1.2021 -0.0005 8 1 1.5326 -2.1015 0.3592 9 7 3.3004 -1.2476 -0.4572 10 6 4.3433 -2.1811 0.0059 11 6 5.3485 -2.2674 -1.1696 12 6 5.3427 -0.8070 -1.6935 13 1 6.0144 -0.1830 -1.1041 14 6 5.7206 -0.7620 -3.1755 15 6 5.8276 0.6948 -3.6305 16 7 6.1901 0.7379 -5.0494 17 6 6.3418 1.9244 -5.6704 18 8 6.1776 2.9587 -5.0534 19 6 6.7083 1.9678 -7.1027 20 7 6.7765 0.8546 -7.8156 21 7 7.0881 0.8356 -9.0579 22 6 7.3728 1.9187 -9.7530 23 6 7.3375 3.1691 -9.1155 24 6 7.6272 4.3686 -9.7818 25 6 7.5725 5.5443 -9.0954 26 6 7.2342 5.5732 -7.7436 27 6 6.9477 4.4257 -7.0649 28 6 6.9890 3.2008 -7.7382 29 6 3.8753 -0.3730 -1.4898 30 1 -0.4850 0.8401 0.0004 31 1 3.9120 -3.1614 0.2088 32 1 4.8347 -1.7917 0.8974 33 1 6.3397 -2.5516 -0.8160 34 1 4.9961 -2.9586 -1.9352 35 1 6.6793 -1.2595 -3.3212 36 1 4.9547 -1.2703 -3.7613 37 1 4.8689 1.1924 -3.4848 38 1 6.5935 1.2032 -3.0447 39 1 6.3215 -0.0875 -5.5416 40 1 7.6300 1.8452 -10.7994 41 1 7.8908 4.3604 -10.8291 42 1 7.7957 6.4689 -9.6070 43 1 7.1992 6.5199 -7.2251 44 1 6.6875 4.4630 -6.0174 45 1 3.3225 -0.4876 -2.4223 46 1 3.8377 0.6650 -1.1593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691898001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:28 Heat of formation + Delta-G solvation = 68.217308 kcal Electronic energy + Delta-G solvation = -28267.808738 eV Core-core repulsion = 24351.573180 eV Total energy + Delta-G solvation = -3916.235558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.92931 -39.70612 -38.49296 -38.12135 -35.47050 -33.88105 -32.99349 -32.26670 -31.57255 -30.74817 -29.24942 -27.41417 -25.99632 -24.74198 -24.52889 -23.38386 -22.35587 -21.37664 -20.19299 -19.87141 -18.91146 -18.57811 -17.79064 -16.98801 -16.59917 -16.20496 -15.99730 -15.87503 -15.12062 -15.07829 -14.97334 -14.46806 -14.38948 -13.83582 -13.76927 -13.37840 -13.05888 -12.95880 -12.80163 -12.60903 -12.42124 -12.08672 -12.05258 -11.87653 -11.55456 -11.40110 -11.05064 -11.03669 -10.75475 -10.46795 -10.42533 -10.18627 -10.14686 -9.95992 -9.86747 -9.79522 -9.40353 -9.28062 -8.93882 -8.51301 -6.86239 -5.95289 -3.29703 -0.51500 0.11583 1.11553 2.18952 2.68953 2.73296 3.39727 3.46193 3.51488 3.51585 3.56354 3.85993 3.98672 4.10980 4.22492 4.54380 4.57645 4.58615 4.71157 4.80512 4.97781 4.98688 5.02205 5.14463 5.23453 5.27074 5.38664 5.43926 5.48066 5.53728 5.68193 5.71415 5.83345 5.84431 5.88543 5.98028 6.06590 6.13941 6.20795 6.24178 6.34038 6.39168 6.56437 6.69815 6.84986 6.87751 7.20189 7.84789 7.89421 8.25279 8.36190 8.89544 9.72064 10.27695 11.21368 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002399 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.377637 B =11666.665485 C =12665.450978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.029 3.971 3 Si 0.882 3.118 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.273 1.273 7 C -0.246 4.246 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.128 3.872 11 C -0.124 4.124 12 C -0.099 4.099 13 H 0.076 0.924 14 C -0.118 4.118 15 C 0.112 3.888 16 N -0.700 5.700 17 C 0.576 3.424 18 O -0.524 6.524 19 C 0.071 3.929 20 N -0.229 5.229 21 N -0.264 5.264 22 C 0.103 3.897 23 C -0.086 4.086 24 C -0.097 4.097 25 C -0.094 4.094 26 C -0.100 4.100 27 C -0.091 4.091 28 C -0.047 4.047 29 C 0.126 3.874 30 H 0.263 0.737 31 H 0.047 0.953 32 H 0.022 0.978 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.412 0.588 40 H 0.182 0.818 41 H 0.141 0.859 42 H 0.134 0.866 43 H 0.136 0.864 44 H 0.175 0.825 45 H 0.039 0.961 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.619 8.234 -21.358 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.171 4.171 3 Si 0.713 3.287 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.199 1.199 7 C -0.374 4.374 8 H 0.103 0.897 9 N -0.336 5.336 10 C 0.003 3.997 11 C -0.163 4.163 12 C -0.119 4.119 13 H 0.094 0.906 14 C -0.156 4.156 15 C -0.011 4.011 16 N -0.350 5.350 17 C 0.358 3.642 18 O -0.400 6.400 19 C -0.086 4.086 20 N -0.066 5.066 21 N -0.096 5.096 22 C -0.071 4.071 23 C -0.094 4.094 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.110 4.110 28 C -0.055 4.055 29 C 0.002 3.998 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.249 0.751 40 H 0.199 0.801 41 H 0.159 0.841 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.192 0.808 45 H 0.057 0.943 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 20.050 7.258 -20.822 29.804 hybrid contribution 0.584 2.300 -0.378 2.404 sum 20.635 9.559 -21.201 31.091 Atomic orbital electron populations 1.69859 1.05776 1.26665 1.52369 1.25265 0.95153 0.97625 0.99036 0.86839 0.79796 0.84598 0.77481 1.21314 1.22977 1.19877 1.18583 0.84868 0.94763 1.39136 0.89672 1.44705 1.08245 1.39435 1.41195 1.21667 0.89470 0.94547 0.94024 1.22772 0.99061 0.95413 0.99037 1.22115 0.97877 0.97860 0.94019 0.90568 1.21794 1.02407 0.94588 0.96809 1.21663 1.01845 0.98503 0.79069 1.45927 1.68392 1.08331 1.12382 1.17448 0.77959 0.84471 0.84281 1.90657 1.51199 1.32569 1.65603 1.22980 0.98378 0.91015 0.96272 1.72723 1.08046 1.24775 1.01068 1.72654 1.09821 1.26809 1.00339 1.24847 0.92196 0.88396 1.01664 1.18921 1.00910 0.95960 0.93592 1.20957 0.99557 0.90863 1.00303 1.21201 0.97018 0.98515 0.94643 1.21318 0.97014 0.99232 0.94389 1.22054 0.95425 0.90190 1.03298 1.18615 0.98862 0.94641 0.93353 1.21699 0.90924 0.94197 0.93009 0.92705 0.93504 0.95974 0.91692 0.91249 0.91092 0.90529 0.90342 0.90819 0.75136 0.80102 0.84078 0.84797 0.84643 0.80805 0.94304 0.96028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.41 13.97 55.49 0.78 -27.64 16 2 C 0.03 0.87 5.42 -17.43 -0.09 0.77 16 3 Si 0.88 23.36 24.69 -169.99 -4.20 19.17 16 4 H -0.29 -7.44 7.07 56.52 0.40 -7.04 16 5 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 6 H -0.27 -7.09 6.92 56.52 0.39 -6.70 16 7 C -0.25 -7.15 10.49 -15.06 -0.16 -7.31 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 N -0.61 -15.02 3.03 -170.04 -0.52 -15.54 16 10 C 0.13 2.55 7.23 -2.53 -0.02 2.53 16 11 C -0.12 -1.92 6.53 -24.58 -0.16 -2.08 16 12 C -0.10 -1.59 2.93 -88.76 -0.26 -1.85 16 13 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 14 C -0.12 -1.49 4.73 -26.73 -0.13 -1.62 16 15 C 0.11 1.50 5.56 -4.04 -0.02 1.48 16 16 N -0.70 -8.69 5.55 -61.23 -0.34 -9.03 16 17 C 0.58 7.90 7.78 -12.30 -0.10 7.81 16 18 O -0.52 -8.23 13.59 5.32 0.07 -8.16 16 19 C 0.07 0.90 6.90 -82.42 -0.57 0.33 16 20 N -0.23 -2.90 10.70 33.56 0.36 -2.54 16 21 N -0.26 -3.03 11.42 30.90 0.35 -2.68 16 22 C 0.10 0.84 11.20 -16.75 -0.19 0.65 16 23 C -0.09 -0.75 5.75 -106.85 -0.61 -1.36 16 24 C -0.10 -0.55 9.84 -39.55 -0.39 -0.94 16 25 C -0.09 -0.52 9.95 -39.87 -0.40 -0.92 16 26 C -0.10 -0.72 9.95 -39.83 -0.40 -1.12 16 27 C -0.09 -0.93 9.26 -39.66 -0.37 -1.30 16 28 C -0.05 -0.53 5.77 -106.57 -0.61 -1.14 16 29 C 0.13 2.75 4.92 -3.04 -0.01 2.74 16 30 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.03 8.05 -51.93 -0.42 0.62 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.99 7.94 -51.93 -0.41 0.58 16 37 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.41 4.44 7.87 -40.82 -0.32 4.12 16 40 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 42 H 0.13 0.35 8.06 -52.48 -0.42 -0.07 16 43 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.18 2.05 5.12 -52.49 -0.27 1.78 16 45 H 0.04 0.87 7.68 -51.93 -0.40 0.47 16 46 H 0.02 0.52 3.63 -51.93 -0.19 0.33 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -35.62 373.68 -8.55 -44.18 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.21 Total: -0.05 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -4.49 Total: -3.34 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: 0.63 Total: -57.43 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: 0.07 Total: -8.16 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.20 Total: 19.17 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.62 -8.55 -44.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691898001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.394 kcal (2) G-P(sol) polarization free energy of solvation -35.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds