Wall clock time and date at job start Sat Apr 11 2020 06:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99789 * 2 1 4 4 H 1.48501 * 109.46963 * 274.22057 * 3 2 1 5 5 H 1.48496 * 109.47108 * 34.22344 * 3 2 1 6 6 H 1.48502 * 109.47074 * 154.22333 * 3 2 1 7 7 C 1.38811 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99477 * 337.35760 * 7 2 1 9 9 N 1.36933 * 120.00195 * 157.35378 * 7 2 1 10 10 C 1.47421 * 125.64896 * 150.17644 * 9 7 2 11 11 C 1.54912 * 104.83237 * 155.90491 * 10 9 7 12 12 C 1.55153 * 101.61336 * 36.99588 * 11 10 9 13 13 H 1.09001 * 110.72739 * 82.87982 * 12 11 10 14 14 C 1.53007 * 110.72050 * 206.15188 * 12 11 10 15 15 C 1.52994 * 109.47406 * 184.99872 * 14 12 11 16 16 N 1.46505 * 109.47148 * 179.97438 * 15 14 12 17 17 C 1.34776 * 119.99991 * 180.02562 * 16 15 14 18 18 O 1.21550 * 119.99996 * 359.97438 * 17 16 15 19 19 C 1.47910 * 119.99909 * 179.97438 * 17 16 15 20 20 N 1.32373 * 120.63577 * 5.91579 * 19 17 16 21 21 N 1.28095 * 123.18057 * 179.97438 * 20 19 17 22 22 C 1.31802 * 123.49481 * 0.02562 * 21 20 19 23 23 C 1.40405 * 119.13948 * 359.97438 * 22 21 20 24 24 C 1.40230 * 122.73744 * 179.97438 * 23 22 21 25 25 C 1.36250 * 119.36951 * 180.02562 * 24 23 22 26 26 C 1.39381 * 121.07512 * 0.02562 * 25 24 23 27 27 C 1.36359 * 121.08598 * 0.02562 * 26 25 24 28 28 C 1.39834 * 119.42162 * 359.73974 * 27 26 25 29 29 C 1.47026 * 125.64836 * 330.22204 * 9 7 2 30 30 H 0.97006 * 119.99897 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.36465 * 37.07264 * 10 9 7 32 32 H 1.08997 * 110.46261 * 274.79574 * 10 9 7 33 33 H 1.09001 * 111.00268 * 155.08072 * 11 10 9 34 34 H 1.08993 * 111.00780 * 278.89678 * 11 10 9 35 35 H 1.08999 * 109.46905 * 305.00064 * 14 12 11 36 36 H 1.09002 * 109.46984 * 64.99337 * 14 12 11 37 37 H 1.08999 * 109.47245 * 299.99983 * 15 14 12 38 38 H 1.09002 * 109.47486 * 59.99772 * 15 14 12 39 39 H 0.96996 * 119.99672 * 359.97438 * 16 15 14 40 40 H 1.07997 * 120.42873 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.31254 * 0.04537 * 24 23 22 42 42 H 1.08005 * 119.46327 * 179.97438 * 25 24 23 43 43 H 1.08001 * 119.45233 * 179.97438 * 26 25 24 44 44 H 1.08001 * 120.28726 * 179.97438 * 27 26 25 45 45 H 1.09004 * 109.87913 * 300.44146 * 29 9 7 46 46 H 1.09001 * 109.88371 * 61.60247 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4084 2.0980 -1.3963 5 1 1.4951 2.6252 0.7874 6 1 3.5895 1.4161 0.6089 7 6 2.0103 -1.2021 -0.0005 8 1 1.5326 -2.1015 0.3592 9 7 3.3004 -1.2476 -0.4572 10 6 4.3433 -2.1811 0.0059 11 6 5.3485 -2.2674 -1.1696 12 6 5.3427 -0.8070 -1.6935 13 1 6.0144 -0.1830 -1.1041 14 6 5.7206 -0.7620 -3.1755 15 6 5.8276 0.6948 -3.6305 16 7 6.1901 0.7379 -5.0494 17 6 6.3418 1.9244 -5.6704 18 8 6.1776 2.9587 -5.0534 19 6 6.7083 1.9678 -7.1027 20 7 6.7765 0.8546 -7.8156 21 7 7.0881 0.8356 -9.0579 22 6 7.3728 1.9187 -9.7530 23 6 7.3375 3.1691 -9.1155 24 6 7.6272 4.3686 -9.7818 25 6 7.5725 5.5443 -9.0954 26 6 7.2342 5.5732 -7.7436 27 6 6.9477 4.4257 -7.0649 28 6 6.9890 3.2008 -7.7382 29 6 3.8753 -0.3730 -1.4898 30 1 -0.4850 0.8401 0.0004 31 1 3.9120 -3.1614 0.2088 32 1 4.8347 -1.7917 0.8974 33 1 6.3397 -2.5516 -0.8160 34 1 4.9961 -2.9586 -1.9352 35 1 6.6793 -1.2595 -3.3212 36 1 4.9547 -1.2703 -3.7613 37 1 4.8689 1.1924 -3.4848 38 1 6.5935 1.2032 -3.0447 39 1 6.3215 -0.0875 -5.5416 40 1 7.6300 1.8452 -10.7994 41 1 7.8908 4.3604 -10.8291 42 1 7.7957 6.4689 -9.6070 43 1 7.1992 6.5199 -7.2251 44 1 6.6875 4.4630 -6.0174 45 1 3.3225 -0.4876 -2.4223 46 1 3.8377 0.6650 -1.1593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691898001.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:27 Heat of formation + Delta-G solvation = 42.792008 kcal Electronic energy + Delta-G solvation = -28268.911261 eV Core-core repulsion = 24351.573180 eV Total energy + Delta-G solvation = -3917.338082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.64575 -40.71136 -39.63141 -39.10862 -36.67216 -34.89602 -34.55202 -33.16278 -32.88765 -31.55915 -30.79130 -28.78235 -27.05638 -26.12994 -25.39343 -24.31507 -23.46229 -22.34438 -21.88198 -21.15355 -19.73910 -19.22153 -19.05669 -18.52185 -17.76787 -17.27909 -17.00683 -16.98505 -16.36190 -15.89480 -15.82593 -15.65294 -15.35704 -15.11494 -14.99000 -14.76405 -14.48908 -14.25135 -13.97268 -13.67100 -13.60970 -13.33801 -13.15333 -12.98460 -12.77804 -12.63396 -12.62246 -12.36296 -12.19675 -11.86000 -11.77150 -11.75472 -11.47220 -11.24167 -10.98044 -10.86165 -10.75691 -10.46709 -10.32177 -9.57992 -8.92106 -8.27343 -5.56849 -1.19832 -0.52504 0.48102 1.25121 1.31239 1.39130 1.42631 1.75376 1.98372 2.35524 2.68837 2.82504 2.97784 3.22082 3.32977 3.40244 3.53636 3.63162 3.65031 3.82300 3.87030 3.99692 4.14932 4.17483 4.19761 4.23714 4.40276 4.51326 4.52786 4.56467 4.60287 4.73170 4.75776 4.85561 4.90123 4.99664 5.02600 5.13165 5.14618 5.19315 5.22718 5.26907 5.28892 5.41908 5.51892 5.71623 5.76466 6.07687 6.22421 6.77894 6.87325 7.50332 7.50524 8.13752 8.93800 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015938 B = 0.002399 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.377637 B =11666.665485 C =12665.450978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.027 4.027 3 Si 0.945 3.055 4 H -0.285 1.285 5 H -0.304 1.304 6 H -0.264 1.264 7 C -0.239 4.239 8 H 0.054 0.946 9 N -0.629 5.629 10 C 0.117 3.883 11 C -0.107 4.107 12 C -0.088 4.088 13 H 0.090 0.910 14 C -0.105 4.105 15 C 0.116 3.884 16 N -0.693 5.693 17 C 0.571 3.429 18 O -0.553 6.553 19 C 0.046 3.954 20 N -0.243 5.243 21 N -0.302 5.302 22 C 0.123 3.877 23 C -0.102 4.102 24 C -0.078 4.078 25 C -0.094 4.094 26 C -0.087 4.087 27 C -0.128 4.128 28 C -0.069 4.069 29 C 0.118 3.882 30 H 0.263 0.737 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.421 0.579 40 H 0.229 0.771 41 H 0.186 0.814 42 H 0.174 0.826 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.023 0.977 46 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.412 9.312 -24.549 35.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.223 4.223 3 Si 0.775 3.225 4 H -0.212 1.212 5 H -0.232 1.232 6 H -0.189 1.189 7 C -0.368 4.368 8 H 0.071 0.929 9 N -0.356 5.356 10 C -0.007 4.007 11 C -0.145 4.145 12 C -0.108 4.108 13 H 0.108 0.892 14 C -0.143 4.143 15 C -0.008 4.008 16 N -0.343 5.343 17 C 0.355 3.645 18 O -0.431 6.431 19 C -0.111 4.111 20 N -0.079 5.079 21 N -0.134 5.134 22 C -0.050 4.050 23 C -0.109 4.109 24 C -0.098 4.098 25 C -0.113 4.113 26 C -0.107 4.107 27 C -0.147 4.147 28 C -0.077 4.077 29 C -0.006 4.006 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.126 0.874 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.258 0.742 40 H 0.246 0.754 41 H 0.204 0.796 42 H 0.191 0.809 43 H 0.173 0.827 44 H 0.166 0.834 45 H 0.041 0.959 46 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 23.892 8.296 -24.023 34.882 hybrid contribution -0.572 1.990 0.499 2.130 sum 23.319 10.286 -23.524 34.684 Atomic orbital electron populations 1.69969 1.07237 1.27332 1.55018 1.25846 0.95757 1.00707 0.99975 0.85833 0.78700 0.80654 0.77348 1.21234 1.23200 1.18880 1.18553 0.86982 0.93611 1.37653 0.92852 1.44900 1.07874 1.40675 1.42183 1.21937 0.89365 0.93139 0.96300 1.22736 0.99730 0.94920 0.97100 1.22090 0.93772 0.98378 0.96511 0.89219 1.21698 1.04231 0.94054 0.94287 1.21535 1.00360 0.99017 0.79847 1.45833 1.67986 1.08518 1.12007 1.17766 0.77404 0.84247 0.85061 1.90645 1.52496 1.33490 1.66509 1.22795 1.00648 0.92113 0.95583 1.72610 1.08301 1.25068 1.01966 1.72575 1.12175 1.28544 1.00070 1.25572 0.89018 0.87286 1.03138 1.19247 1.01457 0.97581 0.92612 1.21507 0.96832 0.89367 1.02083 1.21659 0.95730 1.00228 0.93654 1.21667 0.94624 0.98823 0.95542 1.21886 0.98681 0.91439 1.02708 1.18835 0.99650 0.94234 0.94938 1.21841 0.94694 0.92813 0.91268 0.92759 0.93756 0.95407 0.87424 0.90434 0.87234 0.90799 0.93583 0.90337 0.74150 0.75427 0.79633 0.80871 0.82733 0.83411 0.95889 0.97932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.18 13.97 21.65 0.30 -61.87 16 2 C -0.03 -1.67 5.42 84.86 0.46 -1.21 16 3 Si 0.94 50.17 24.69 68.60 1.69 51.86 16 4 H -0.29 -14.91 7.07 99.48 0.70 -14.21 16 5 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 6 H -0.26 -13.40 6.92 99.48 0.69 -12.71 16 7 C -0.24 -14.37 10.49 84.03 0.88 -13.48 16 8 H 0.05 3.47 8.06 -2.91 -0.02 3.44 16 9 N -0.63 -31.30 3.03 -691.89 -2.10 -33.40 16 10 C 0.12 4.49 7.23 86.86 0.63 5.12 16 11 C -0.11 -2.93 6.53 31.99 0.21 -2.72 16 12 C -0.09 -2.62 2.93 -9.59 -0.03 -2.64 16 13 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 14 C -0.10 -2.43 4.73 30.59 0.14 -2.29 16 15 C 0.12 3.09 5.56 86.38 0.48 3.57 16 16 N -0.69 -17.53 5.55 -465.90 -2.58 -20.12 16 17 C 0.57 16.60 7.78 86.81 0.68 17.27 16 18 O -0.55 -18.69 13.59 -3.87 -0.05 -18.74 16 19 C 0.05 1.22 6.90 42.44 0.29 1.51 16 20 N -0.24 -6.24 10.70 -47.73 -0.51 -6.75 16 21 N -0.30 -6.64 11.42 -56.15 -0.64 -7.28 16 22 C 0.12 1.67 11.20 85.23 0.95 2.62 16 23 C -0.10 -1.52 5.75 -21.31 -0.12 -1.64 16 24 C -0.08 -0.54 9.84 22.29 0.22 -0.32 16 25 C -0.09 -0.64 9.95 22.08 0.22 -0.42 16 26 C -0.09 -1.11 9.95 22.11 0.22 -0.89 16 27 C -0.13 -2.69 9.26 22.22 0.21 -2.49 16 28 C -0.07 -1.56 5.77 -21.12 -0.12 -1.68 16 29 C 0.12 5.14 4.92 86.74 0.43 5.57 16 30 H 0.26 16.33 8.31 -92.70 -0.77 15.56 16 31 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.08 2.04 8.05 -2.39 -0.02 2.02 16 35 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.07 1.80 7.94 -2.39 -0.02 1.78 16 37 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.42 9.03 7.87 -92.71 -0.73 8.30 16 40 H 0.23 0.60 8.06 -2.91 -0.02 0.58 16 41 H 0.19 -0.39 8.06 -2.91 -0.02 -0.41 16 42 H 0.17 -0.13 8.06 -2.91 -0.02 -0.15 16 43 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 44 H 0.15 3.85 5.12 -2.91 -0.01 3.84 16 45 H 0.02 1.06 7.68 -2.38 -0.02 1.04 16 46 H 0.00 0.15 3.63 -2.39 -0.01 0.14 16 Total: -1.00 -84.82 373.68 2.12 -82.70 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.27 Total: 7.70 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.75 Total: 5.90 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -5.53 Total: -129.42 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.05 Total: -18.74 kcal Atomic # 14 Polarization: 50.17 SS G_CDS: 1.69 Total: 51.86 kcal Total: -84.82 2.12 -82.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691898001.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.489 kcal (2) G-P(sol) polarization free energy of solvation -84.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds