Wall clock time and date at job start Sat Apr 11 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99680 * 2 1 4 4 H 1.48504 * 109.46539 * 270.27102 * 3 2 1 5 5 H 1.48495 * 109.47141 * 30.26945 * 3 2 1 6 6 H 1.48496 * 109.47095 * 150.27310 * 3 2 1 7 7 C 1.38809 * 120.00155 * 180.26827 * 2 1 3 8 8 H 1.07998 * 120.00134 * 179.72915 * 7 2 1 9 9 N 1.36935 * 119.99988 * 359.72782 * 7 2 1 10 10 C 1.46506 * 119.99796 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46894 * 174.90491 * 10 9 7 12 12 N 1.46508 * 110.01487 * 55.14889 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.16414 * 12 11 10 14 14 O 1.21502 * 120.00315 * 354.90240 * 13 12 11 15 15 C 1.48231 * 119.99820 * 174.90555 * 13 12 11 16 16 C 1.40574 * 119.75189 * 179.72695 * 15 13 12 17 17 N 1.31258 * 120.57164 * 179.65125 * 16 15 13 18 18 C 1.33784 * 119.80661 * 0.65905 * 17 16 15 19 19 C 1.40539 * 120.99760 * 179.66138 * 18 17 16 20 20 C 1.36081 * 119.75155 * 179.97438 * 19 18 17 21 21 C 1.39478 * 121.01451 * 359.96514 * 20 19 18 22 22 C 1.35984 * 120.98352 * 0.02562 * 21 20 19 23 23 C 1.40820 * 119.70106 * 0.02562 * 22 21 20 24 24 N 1.32173 * 119.74581 * 359.97438 * 15 13 12 25 25 C 1.54263 * 110.03508 * 293.70997 * 11 10 9 26 26 C 1.54891 * 104.19537 * 217.10527 * 25 11 10 27 27 C 1.54898 * 102.74869 * 37.93932 * 26 25 11 28 28 C 1.53875 * 110.02938 * 176.53776 * 11 10 9 29 29 H 0.96996 * 120.00343 * 359.73322 * 1 2 3 30 30 H 0.97002 * 120.00133 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47478 * 294.90719 * 10 9 7 32 32 H 1.09003 * 109.47046 * 54.91536 * 10 9 7 33 33 H 0.96993 * 120.00090 * 245.15878 * 12 11 10 34 34 H 1.08003 * 119.71135 * 359.97438 * 16 15 13 35 35 H 1.08000 * 120.12671 * 359.96560 * 19 18 17 36 36 H 1.08006 * 119.48907 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.50733 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.15072 * 180.02562 * 22 21 20 39 39 H 1.09003 * 110.48678 * 335.77737 * 25 11 10 40 40 H 1.08999 * 110.49079 * 98.42519 * 25 11 10 41 41 H 1.08999 * 110.75915 * 279.62831 * 26 25 11 42 42 H 1.08993 * 110.76130 * 156.25324 * 26 25 11 43 43 H 1.08994 * 110.48675 * 203.38076 * 27 26 25 44 44 H 1.08995 * 110.48247 * 80.73683 * 27 26 25 45 45 H 1.09003 * 110.03283 * 238.56900 * 28 11 10 46 46 H 1.08990 * 110.03435 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0497 -1.4001 5 1 1.4504 2.6510 0.7057 6 1 3.5506 1.4387 0.6942 7 6 2.0103 -1.2021 -0.0056 8 1 3.0903 -1.2021 -0.0100 9 7 1.3257 -2.3880 -0.0055 10 6 2.0583 -3.6567 -0.0121 11 6 1.0696 -4.8172 0.1176 12 7 0.0567 -4.7332 -0.9376 13 6 0.4149 -4.8793 -2.2287 14 8 1.5882 -4.9880 -2.5251 15 6 -0.6225 -4.9074 -3.2870 16 6 -0.2427 -5.0543 -4.6325 17 7 -1.1483 -5.0880 -5.5820 18 6 -2.4438 -4.9686 -5.2699 19 6 -3.4338 -4.9942 -6.2671 20 6 -4.7441 -4.8710 -5.9211 21 6 -5.1241 -4.7198 -4.5876 22 6 -4.1960 -4.6905 -3.5942 23 6 -2.8296 -4.8138 -3.9120 24 7 -1.8974 -4.7892 -2.9589 25 6 0.3939 -4.7834 1.5039 26 6 0.2541 -6.2756 1.8948 27 6 1.5692 -6.8940 1.3588 28 6 1.8169 -6.1591 0.0253 29 1 -0.4850 0.8400 0.0039 30 1 0.3557 -2.3881 -0.0019 31 1 2.6106 -3.7526 -0.9468 32 1 2.7553 -3.6781 0.8257 33 1 -0.8717 -4.5725 -0.7071 34 1 0.8031 -5.1453 -4.8866 35 1 -3.1557 -5.1110 -7.3041 36 1 -5.5014 -4.8909 -6.6909 37 1 -6.1711 -4.6246 -4.3404 38 1 -4.5053 -4.5732 -2.5661 39 1 1.0233 -4.2583 2.2224 40 1 -0.5870 -4.3126 1.4389 41 1 -0.6108 -6.7237 1.4057 42 1 0.1879 -6.3870 2.9770 43 1 1.4461 -7.9634 1.1879 44 1 2.3884 -6.7097 2.0538 45 1 1.4254 -6.7482 -0.8040 46 1 2.8839 -5.9836 -0.1114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698630448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:33 Heat of formation + Delta-G solvation = 44.999293 kcal Electronic energy + Delta-G solvation = -29544.808404 eV Core-core repulsion = 25627.566037 eV Total energy + Delta-G solvation = -3917.242367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62113 -40.02764 -37.99315 -37.09852 -35.07356 -34.27812 -33.12159 -31.31283 -30.87039 -30.65567 -28.62363 -28.03870 -25.87639 -24.72776 -24.33630 -22.44092 -22.18710 -21.52536 -20.59587 -19.11109 -18.72324 -18.31270 -17.52472 -17.04059 -15.98171 -15.89034 -15.51237 -15.22327 -14.94152 -14.60953 -14.42848 -14.25990 -14.22206 -13.92598 -13.64577 -13.16628 -12.98387 -12.67740 -12.18418 -12.10276 -12.00353 -11.95283 -11.86460 -11.79205 -11.51714 -11.16286 -10.94648 -10.87337 -10.79823 -10.67945 -10.46975 -10.39775 -10.01343 -9.98929 -9.64298 -9.18658 -9.15289 -8.82987 -8.77397 -8.57670 -6.81674 -5.70385 -2.96982 -0.11650 0.27136 1.67753 2.35566 3.16181 3.26392 3.47414 3.52657 3.53871 3.80021 3.92723 3.94687 4.09370 4.53556 4.61328 4.65278 4.73521 4.85793 4.88273 4.90798 5.01063 5.08200 5.24106 5.55110 5.59627 5.63104 5.63558 5.67153 5.69293 5.81144 5.81675 5.91187 5.97794 5.99464 6.05229 6.07211 6.23087 6.30166 6.39175 6.42020 6.51760 6.54771 6.60948 6.88620 7.02592 7.10944 7.46472 7.76625 7.85295 8.44968 8.48798 9.60257 10.18840 10.54461 11.52685 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008538 B = 0.003916 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.537231 B = 7148.666357 C = 8978.163006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.231 4.231 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.145 3.855 11 C 0.167 3.833 12 N -0.685 5.685 13 C 0.578 3.422 14 O -0.519 6.519 15 C 0.071 3.929 16 C 0.129 3.871 17 N -0.428 5.428 18 C 0.090 3.910 19 C -0.089 4.089 20 C -0.092 4.092 21 C -0.106 4.106 22 C -0.072 4.072 23 C 0.077 3.923 24 N -0.390 5.390 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.117 4.117 29 H 0.253 0.747 30 H 0.382 0.618 31 H 0.038 0.962 32 H 0.029 0.971 33 H 0.407 0.593 34 H 0.188 0.812 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 -16.365 -6.139 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.363 4.363 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.017 3.983 11 C 0.081 3.919 12 N -0.335 5.335 13 C 0.361 3.639 14 O -0.393 6.393 15 C -0.086 4.086 16 C -0.046 4.046 17 N -0.142 5.142 18 C -0.035 4.035 19 C -0.108 4.108 20 C -0.112 4.112 21 C -0.126 4.126 22 C -0.091 4.091 23 C -0.049 4.049 24 N -0.108 5.108 25 C -0.155 4.155 26 C -0.163 4.163 27 C -0.162 4.162 28 C -0.156 4.156 29 H 0.063 0.937 30 H 0.216 0.784 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.243 0.757 34 H 0.205 0.795 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.972 -16.333 -6.371 19.695 hybrid contribution -0.329 1.291 0.019 1.332 sum -9.301 -15.043 -6.352 18.792 Atomic orbital electron populations 1.69655 1.05028 1.25368 1.58414 1.24683 0.95486 0.97485 1.03437 0.86217 0.78674 0.84060 0.77458 1.21902 1.21890 1.20791 1.19237 0.91022 0.84208 1.41804 0.91309 1.42227 1.05687 0.99731 1.89450 1.21173 0.92978 0.84971 0.99215 1.21370 0.88603 0.95762 0.86146 1.45891 1.12155 1.70600 1.04874 1.17451 0.86746 0.77487 0.82224 1.90778 1.16943 1.49697 1.81931 1.22651 0.91755 0.98734 0.95466 1.23998 1.01141 0.91438 0.88034 1.68819 1.00281 1.10022 1.35055 1.19801 0.92079 0.98526 0.93102 1.20804 0.91377 0.99639 0.99022 1.21073 0.96005 0.97392 0.96762 1.21018 1.00253 0.98830 0.92478 1.20927 0.89511 0.97615 1.01046 1.19614 0.94690 1.00800 0.89814 1.68539 1.00443 1.06193 1.35644 1.22586 1.01511 0.96164 0.95222 1.22540 0.97592 0.95800 1.00375 1.22384 0.97775 0.99020 0.96990 1.22422 1.01204 0.94693 0.97306 0.93746 0.78441 0.94375 0.95372 0.75706 0.79550 0.84174 0.84632 0.84535 0.83857 0.89429 0.90874 0.91807 0.91590 0.92046 0.91486 0.91532 0.90654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.62 13.06 55.49 0.72 -27.89 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.90 23.06 29.55 -169.99 -5.02 18.03 16 4 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.23 -6.65 9.99 -15.06 -0.15 -6.80 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.65 5.27 -59.91 -0.32 -18.96 16 10 C 0.14 3.08 4.64 -4.04 -0.02 3.06 16 11 C 0.17 2.78 0.57 -130.70 -0.07 2.71 16 12 N -0.68 -11.49 4.48 -47.38 -0.21 -11.71 16 13 C 0.58 10.26 6.86 -12.15 -0.08 10.18 16 14 O -0.52 -10.14 13.59 5.36 0.07 -10.07 16 15 C 0.07 1.15 6.76 -82.73 -0.56 0.59 16 16 C 0.13 1.94 10.75 -16.92 -0.18 1.76 16 17 N -0.43 -6.28 10.45 -10.53 -0.11 -6.39 16 18 C 0.09 1.22 6.60 -84.70 -0.56 0.67 16 19 C -0.09 -0.91 9.98 -39.49 -0.39 -1.30 16 20 C -0.09 -0.72 9.95 -39.89 -0.40 -1.12 16 21 C -0.11 -0.85 9.95 -39.93 -0.40 -1.25 16 22 C -0.07 -0.77 9.99 -39.41 -0.39 -1.16 16 23 C 0.08 1.08 6.60 -84.79 -0.56 0.52 16 24 N -0.39 -6.06 9.65 -7.39 -0.07 -6.13 16 25 C -0.12 -1.74 5.74 -25.07 -0.14 -1.89 16 26 C -0.13 -1.48 6.91 -24.73 -0.17 -1.65 16 27 C -0.12 -1.46 6.83 -25.07 -0.17 -1.63 16 28 C -0.12 -1.70 5.22 -25.61 -0.13 -1.84 16 29 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.38 10.17 7.19 -40.82 -0.29 9.87 16 31 H 0.04 0.90 6.55 -51.93 -0.34 0.56 16 32 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 33 H 0.41 6.49 7.58 -40.82 -0.31 6.18 16 34 H 0.19 2.51 7.62 -52.48 -0.40 2.11 16 35 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 37 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.09 1.41 7.79 -51.93 -0.40 1.00 16 40 H 0.07 1.11 7.70 -51.93 -0.40 0.71 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.07 0.99 6.99 -51.93 -0.36 0.63 16 46 H 0.07 1.14 7.67 -51.93 -0.40 0.74 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -33.92 378.27 -9.97 -43.90 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.25 Total: 13.24 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -4.48 Total: 0.29 kcal Atomic # 7 Polarization: -71.10 SS G_CDS: 0.01 Total: -71.08 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.92 -9.97 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698630448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.895 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds