Wall clock time and date at job start Sat Apr 11 2020 06:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99680 * 2 1 4 4 H 1.48504 * 109.46539 * 270.27102 * 3 2 1 5 5 H 1.48495 * 109.47141 * 30.26945 * 3 2 1 6 6 H 1.48496 * 109.47095 * 150.27310 * 3 2 1 7 7 C 1.38809 * 120.00155 * 180.26827 * 2 1 3 8 8 H 1.07998 * 120.00134 * 179.72915 * 7 2 1 9 9 N 1.36935 * 119.99988 * 359.72782 * 7 2 1 10 10 C 1.46506 * 119.99796 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46894 * 174.90491 * 10 9 7 12 12 N 1.46508 * 110.01487 * 55.14889 * 11 10 9 13 13 C 1.34776 * 119.99573 * 65.16414 * 12 11 10 14 14 O 1.21502 * 120.00315 * 354.90240 * 13 12 11 15 15 C 1.48231 * 119.99820 * 174.90555 * 13 12 11 16 16 C 1.40574 * 119.75189 * 179.72695 * 15 13 12 17 17 N 1.31258 * 120.57164 * 179.65125 * 16 15 13 18 18 C 1.33784 * 119.80661 * 0.65905 * 17 16 15 19 19 C 1.40539 * 120.99760 * 179.66138 * 18 17 16 20 20 C 1.36081 * 119.75155 * 179.97438 * 19 18 17 21 21 C 1.39478 * 121.01451 * 359.96514 * 20 19 18 22 22 C 1.35984 * 120.98352 * 0.02562 * 21 20 19 23 23 C 1.40820 * 119.70106 * 0.02562 * 22 21 20 24 24 N 1.32173 * 119.74581 * 359.97438 * 15 13 12 25 25 C 1.54263 * 110.03508 * 293.70997 * 11 10 9 26 26 C 1.54891 * 104.19537 * 217.10527 * 25 11 10 27 27 C 1.54898 * 102.74869 * 37.93932 * 26 25 11 28 28 C 1.53875 * 110.02938 * 176.53776 * 11 10 9 29 29 H 0.96996 * 120.00343 * 359.73322 * 1 2 3 30 30 H 0.97002 * 120.00133 * 0.02562 * 9 7 2 31 31 H 1.08992 * 109.47478 * 294.90719 * 10 9 7 32 32 H 1.09003 * 109.47046 * 54.91536 * 10 9 7 33 33 H 0.96993 * 120.00090 * 245.15878 * 12 11 10 34 34 H 1.08003 * 119.71135 * 359.97438 * 16 15 13 35 35 H 1.08000 * 120.12671 * 359.96560 * 19 18 17 36 36 H 1.08006 * 119.48907 * 179.97438 * 20 19 18 37 37 H 1.08000 * 119.50733 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.15072 * 180.02562 * 22 21 20 39 39 H 1.09003 * 110.48678 * 335.77737 * 25 11 10 40 40 H 1.08999 * 110.49079 * 98.42519 * 25 11 10 41 41 H 1.08999 * 110.75915 * 279.62831 * 26 25 11 42 42 H 1.08993 * 110.76130 * 156.25324 * 26 25 11 43 43 H 1.08994 * 110.48675 * 203.38076 * 27 26 25 44 44 H 1.08995 * 110.48247 * 80.73683 * 27 26 25 45 45 H 1.09003 * 110.03283 * 238.56900 * 28 11 10 46 46 H 1.08990 * 110.03435 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0497 -1.4001 5 1 1.4504 2.6510 0.7057 6 1 3.5506 1.4387 0.6942 7 6 2.0103 -1.2021 -0.0056 8 1 3.0903 -1.2021 -0.0100 9 7 1.3257 -2.3880 -0.0055 10 6 2.0583 -3.6567 -0.0121 11 6 1.0696 -4.8172 0.1176 12 7 0.0567 -4.7332 -0.9376 13 6 0.4149 -4.8793 -2.2287 14 8 1.5882 -4.9880 -2.5251 15 6 -0.6225 -4.9074 -3.2870 16 6 -0.2427 -5.0543 -4.6325 17 7 -1.1483 -5.0880 -5.5820 18 6 -2.4438 -4.9686 -5.2699 19 6 -3.4338 -4.9942 -6.2671 20 6 -4.7441 -4.8710 -5.9211 21 6 -5.1241 -4.7198 -4.5876 22 6 -4.1960 -4.6905 -3.5942 23 6 -2.8296 -4.8138 -3.9120 24 7 -1.8974 -4.7892 -2.9589 25 6 0.3939 -4.7834 1.5039 26 6 0.2541 -6.2756 1.8948 27 6 1.5692 -6.8940 1.3588 28 6 1.8169 -6.1591 0.0253 29 1 -0.4850 0.8400 0.0039 30 1 0.3557 -2.3881 -0.0019 31 1 2.6106 -3.7526 -0.9468 32 1 2.7553 -3.6781 0.8257 33 1 -0.8717 -4.5725 -0.7071 34 1 0.8031 -5.1453 -4.8866 35 1 -3.1557 -5.1110 -7.3041 36 1 -5.5014 -4.8909 -6.6909 37 1 -6.1711 -4.6246 -4.3404 38 1 -4.5053 -4.5732 -2.5661 39 1 1.0233 -4.2583 2.2224 40 1 -0.5870 -4.3126 1.4389 41 1 -0.6108 -6.7237 1.4057 42 1 0.1879 -6.3870 2.9770 43 1 1.4461 -7.9634 1.1879 44 1 2.3884 -6.7097 2.0538 45 1 1.4254 -6.7482 -0.8040 46 1 2.8839 -5.9836 -0.1114 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698630448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:32 Heat of formation + Delta-G solvation = 21.598282 kcal Electronic energy + Delta-G solvation = -29545.823148 eV Core-core repulsion = 25627.566037 eV Total energy + Delta-G solvation = -3918.257111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.66265 -41.33886 -39.11840 -38.16663 -36.18232 -36.14604 -34.51275 -33.05557 -32.03165 -31.62365 -29.83005 -29.53217 -26.99733 -26.30404 -25.56767 -24.02951 -23.31533 -22.72462 -21.67937 -20.45966 -19.75797 -19.43686 -19.11413 -18.61802 -17.32764 -16.94148 -16.72343 -16.49830 -16.10396 -16.04160 -15.61050 -15.49726 -15.38892 -15.22807 -15.02442 -14.73071 -14.56533 -14.08447 -13.59587 -13.24902 -12.99497 -12.96296 -12.91927 -12.91354 -12.83370 -12.73010 -12.65417 -12.29299 -12.19122 -11.99475 -11.92049 -11.80604 -11.74038 -11.41279 -11.34059 -10.91719 -10.31053 -10.16537 -9.96817 -9.64772 -8.97198 -7.96321 -5.23275 -1.11659 -0.71039 0.73807 1.33416 1.42766 1.44915 1.53198 1.90572 2.11510 2.53606 2.72123 2.91197 2.96031 3.09313 3.35982 3.48088 3.65786 3.68532 3.70695 3.91046 3.97851 4.09953 4.17108 4.23460 4.34976 4.39792 4.50812 4.54988 4.67609 4.79294 4.80780 4.85442 4.86025 4.92103 5.05653 5.09120 5.09552 5.13084 5.19240 5.24885 5.31582 5.33624 5.45831 5.49539 5.62860 5.68175 5.95207 6.25383 6.33969 6.54392 7.08676 7.32791 8.07858 8.34812 9.26819 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008538 B = 0.003916 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3278.537231 B = 7148.666357 C = 8978.163006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.071 4.071 3 Si 0.969 3.031 4 H -0.293 1.293 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.244 4.244 8 H 0.068 0.932 9 N -0.732 5.732 10 C 0.147 3.853 11 C 0.169 3.831 12 N -0.681 5.681 13 C 0.575 3.425 14 O -0.547 6.547 15 C 0.043 3.957 16 C 0.115 3.885 17 N -0.437 5.437 18 C 0.072 3.928 19 C -0.106 4.106 20 C -0.067 4.067 21 C -0.084 4.084 22 C -0.092 4.092 23 C 0.054 3.946 24 N -0.399 5.399 25 C -0.115 4.115 26 C -0.113 4.113 27 C -0.116 4.116 28 C -0.112 4.112 29 H 0.250 0.750 30 H 0.375 0.625 31 H 0.014 0.986 32 H 0.031 0.969 33 H 0.410 0.590 34 H 0.190 0.810 35 H 0.157 0.843 36 H 0.182 0.818 37 H 0.179 0.821 38 H 0.152 0.848 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.348 -17.191 -6.462 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.799 3.201 4 H -0.220 1.220 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.375 5.375 10 C 0.019 3.981 11 C 0.083 3.917 12 N -0.332 5.332 13 C 0.359 3.641 14 O -0.424 6.424 15 C -0.112 4.112 16 C -0.059 4.059 17 N -0.150 5.150 18 C -0.053 4.053 19 C -0.125 4.125 20 C -0.086 4.086 21 C -0.103 4.103 22 C -0.111 4.111 23 C -0.073 4.073 24 N -0.117 5.117 25 C -0.153 4.153 26 C -0.151 4.151 27 C -0.153 4.153 28 C -0.151 4.151 29 H 0.059 0.941 30 H 0.207 0.793 31 H 0.031 0.969 32 H 0.049 0.951 33 H 0.246 0.754 34 H 0.207 0.793 35 H 0.174 0.826 36 H 0.199 0.801 37 H 0.197 0.803 38 H 0.170 0.830 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.474 -17.190 -6.673 21.718 hybrid contribution 0.249 1.544 -0.016 1.564 sum -11.225 -15.646 -6.689 20.385 Atomic orbital electron populations 1.69804 1.06358 1.25857 1.59621 1.25461 0.96395 1.00682 1.03790 0.85198 0.77919 0.79840 0.77190 1.22026 1.21678 1.19445 1.19592 0.91286 0.85600 1.41086 0.91407 1.42321 1.05443 1.00519 1.89185 1.21233 0.93895 0.85151 0.97800 1.21364 0.88125 0.94950 0.87275 1.45884 1.12245 1.70256 1.04767 1.17750 0.86854 0.76775 0.82732 1.90740 1.18131 1.51115 1.82429 1.22371 0.91901 1.01645 0.95310 1.23987 1.01549 0.92514 0.87879 1.68820 1.01024 1.10342 1.34842 1.20345 0.92298 0.98617 0.94066 1.21135 0.91770 1.00479 0.99104 1.21655 0.95792 0.93420 0.97778 1.21575 1.01687 0.95226 0.91842 1.21206 0.88465 0.98859 1.02614 1.20133 0.95763 1.01554 0.89878 1.68455 1.00413 1.06145 1.36690 1.22543 1.00485 0.98705 0.93567 1.22499 0.97921 0.92840 1.01795 1.22375 0.98059 0.99820 0.95086 1.22361 1.00082 0.93575 0.99119 0.94105 0.79254 0.96857 0.95099 0.75376 0.79327 0.82583 0.80078 0.80340 0.83018 0.90711 0.91552 0.90874 0.89431 0.89867 0.90592 0.92075 0.91708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 3 Si 0.97 48.06 29.55 68.60 2.03 50.08 16 4 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 5 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 7 C -0.24 -14.38 9.99 84.03 0.84 -13.54 16 8 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 9 N -0.73 -39.08 5.27 -343.45 -1.81 -40.89 16 10 C 0.15 6.54 4.64 86.38 0.40 6.94 16 11 C 0.17 5.83 0.57 4.33 0.00 5.83 16 12 N -0.68 -24.17 4.48 -422.11 -1.89 -26.07 16 13 C 0.58 21.92 6.86 86.90 0.60 22.51 16 14 O -0.55 -23.09 13.59 -3.72 -0.05 -23.14 16 15 C 0.04 1.49 6.76 42.32 0.29 1.78 16 16 C 0.11 3.73 10.75 85.35 0.92 4.65 16 17 N -0.44 -13.32 10.45 -187.22 -1.96 -15.28 16 18 C 0.07 1.96 6.60 40.34 0.27 2.23 16 19 C -0.11 -1.91 9.98 22.33 0.22 -1.69 16 20 C -0.07 -0.73 9.95 22.07 0.22 -0.51 16 21 C -0.08 -0.99 9.95 22.04 0.22 -0.77 16 22 C -0.09 -1.82 9.99 22.38 0.22 -1.60 16 23 C 0.05 1.52 6.60 40.48 0.27 1.79 16 24 N -0.40 -13.00 9.65 -177.28 -1.71 -14.71 16 25 C -0.11 -3.44 5.74 31.67 0.18 -3.26 16 26 C -0.11 -2.46 6.91 31.89 0.22 -2.24 16 27 C -0.12 -2.53 6.83 31.67 0.22 -2.31 16 28 C -0.11 -3.32 5.22 31.32 0.16 -3.15 16 29 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.38 20.83 7.19 -92.71 -0.67 20.16 16 31 H 0.01 0.67 6.55 -2.39 -0.02 0.66 16 32 H 0.03 1.36 8.04 -2.39 -0.02 1.34 16 33 H 0.41 13.83 7.58 -92.71 -0.70 13.12 16 34 H 0.19 5.69 7.62 -2.91 -0.02 5.67 16 35 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.18 0.44 8.06 -2.91 -0.02 0.42 16 37 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 38 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 39 H 0.07 2.43 7.79 -2.39 -0.02 2.41 16 40 H 0.07 2.06 7.70 -2.39 -0.02 2.04 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 1.87 6.99 -2.39 -0.02 1.85 16 46 H 0.06 2.02 7.67 -2.39 -0.02 2.00 16 Total: -1.00 -77.13 378.27 0.26 -76.88 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: -0.34 Total: 40.24 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 5.71 Total: 12.90 kcal Atomic # 7 Polarization: -149.88 SS G_CDS: -7.09 Total: -156.97 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.14 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.08 kcal Total: -77.13 0.26 -76.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698630448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.476 kcal (2) G-P(sol) polarization free energy of solvation -77.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds