Wall clock time and date at job start Sat Apr 11 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00250 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00370 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47319 * 180.02562 * 11 10 9 13 13 H 1.08996 * 110.88998 * 54.29475 * 12 11 10 14 14 C 1.55154 * 111.00598 * 178.17997 * 12 11 10 15 15 C 1.54329 * 102.94397 * 153.57216 * 14 12 11 16 16 N 1.47010 * 107.27105 * 337.80880 * 15 14 12 17 17 C 1.34779 * 125.65008 * 178.89831 * 16 15 14 18 18 O 1.21549 * 120.00497 * 180.02562 * 17 16 15 19 19 C 1.47919 * 119.99723 * 0.02562 * 17 16 15 20 20 C 1.38937 * 119.84356 * 179.72345 * 19 17 16 21 21 C 1.40653 * 117.38642 * 179.75105 * 20 19 17 22 22 C 1.40255 * 122.03625 * 180.19998 * 21 20 19 23 23 C 1.36276 * 119.47129 * 180.32418 * 22 21 20 24 24 C 1.39326 * 120.87208 * 0.02562 * 23 22 21 25 25 C 1.36223 * 121.15835 * 359.93223 * 24 23 22 26 26 C 1.40333 * 119.68248 * 0.08738 * 25 24 23 27 27 N 1.33816 * 121.61977 * 179.91101 * 26 25 24 28 28 N 1.28439 * 121.68730 * 180.02562 * 27 26 25 29 29 C 1.47468 * 108.72580 * 358.97276 * 16 15 14 30 30 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 31 31 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47424 * 299.99703 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.00128 * 10 9 7 34 34 H 1.09000 * 109.46887 * 300.00491 * 11 10 9 35 35 H 1.08998 * 109.46846 * 59.99668 * 11 10 9 36 36 H 1.08998 * 110.72596 * 271.93720 * 14 12 11 37 37 H 1.09001 * 110.72118 * 35.21362 * 14 12 11 38 38 H 1.09001 * 109.87743 * 97.22623 * 15 14 12 39 39 H 1.09001 * 109.88170 * 218.23200 * 15 14 12 40 40 H 1.08000 * 121.30892 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.26519 * 0.29404 * 22 21 20 42 42 H 1.08002 * 119.56214 * 179.97438 * 23 22 21 43 43 H 1.08006 * 119.41799 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.15555 * 180.02562 * 25 24 23 45 45 H 1.08998 * 110.34840 * 265.25649 * 29 16 15 46 46 H 1.08995 * 110.40928 * 142.91853 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0580 -3.6568 -0.0170 11 6 1.0637 -4.8197 -0.0228 12 6 1.8286 -6.1447 -0.0281 13 1 2.5370 -6.1878 0.7991 14 6 0.8529 -7.3503 0.0118 15 6 1.6641 -8.4742 -0.6667 16 7 2.6933 -7.8302 -1.4957 17 6 3.6209 -8.4705 -2.2346 18 8 4.4268 -7.8331 -2.8840 19 6 3.6584 -9.9491 -2.2551 20 6 4.6124 -10.6060 -3.0224 21 6 4.6045 -12.0123 -2.9998 22 6 5.5259 -12.7734 -3.7340 23 6 5.4666 -14.1337 -3.6791 24 6 4.5034 -14.7766 -2.9044 25 6 3.5943 -14.0677 -2.1787 26 6 3.6224 -12.6650 -2.2094 27 7 2.7471 -11.9303 -1.5131 28 7 2.7713 -10.6465 -1.5407 29 6 2.5441 -6.3673 -1.3840 30 1 -0.4850 0.8401 0.0041 31 1 0.3555 -2.3880 -0.0113 32 1 2.6846 -3.7106 -0.9072 33 1 2.6847 -3.7186 0.8727 34 1 0.4367 -4.7660 0.8672 35 1 0.4374 -4.7577 -0.9127 36 1 0.6108 -7.6167 1.0407 37 1 -0.0526 -7.1325 -0.5545 38 1 2.1362 -9.0997 0.0909 39 1 1.0075 -9.0802 -1.2910 40 1 5.3341 -10.0582 -3.6103 41 1 6.2760 -12.2852 -4.3385 42 1 6.1750 -14.7212 -4.2442 43 1 4.4780 -15.8561 -2.8777 44 1 2.8549 -14.5827 -1.5834 45 1 1.9339 -5.9850 -2.2022 46 1 3.5214 -5.8848 -1.3809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700073772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:41 Heat of formation + Delta-G solvation = 61.112289 kcal Electronic energy + Delta-G solvation = -27751.619422 eV Core-core repulsion = 23835.075768 eV Total energy + Delta-G solvation = -3916.543655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.87739 -40.11220 -38.32920 -37.80091 -35.12220 -34.20651 -33.12558 -32.12671 -31.15121 -30.79399 -29.44938 -27.38964 -25.74713 -25.54738 -24.01723 -23.07601 -22.88954 -21.23514 -20.72372 -20.00232 -19.20543 -18.47855 -17.18732 -17.05196 -16.61364 -16.28068 -15.91073 -15.43688 -15.24029 -14.91897 -14.69283 -14.58882 -14.07336 -13.91229 -13.51410 -13.32583 -13.15921 -13.01060 -12.94493 -12.81197 -12.65620 -12.55693 -12.19256 -11.70499 -11.53536 -11.26632 -11.21037 -10.99411 -10.77713 -10.59899 -10.42263 -10.34995 -10.23658 -10.20815 -9.95221 -9.94530 -9.62052 -9.03031 -8.81396 -8.69879 -6.86660 -5.71568 -2.99881 -0.61409 -0.14077 1.13329 1.90102 2.63752 2.77697 3.37736 3.41479 3.48221 3.52073 3.53468 3.71857 3.89090 3.96215 4.15618 4.37264 4.43135 4.50858 4.60237 4.63649 4.69703 4.90872 4.93891 5.07568 5.10706 5.25206 5.28242 5.40736 5.56240 5.57508 5.60455 5.62112 5.68438 5.70658 5.80636 5.89093 5.93846 5.97490 6.03394 6.15127 6.17737 6.30959 6.41888 6.45193 6.89897 6.93846 7.29924 7.74755 7.79563 8.07372 8.47752 9.58554 10.17319 10.51861 11.51385 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031631 B = 0.001751 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.987496 B =15990.547754 C =16737.432979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.734 5.734 10 C 0.151 3.849 11 C -0.114 4.114 12 C -0.094 4.094 13 H 0.086 0.914 14 C -0.132 4.132 15 C 0.112 3.888 16 N -0.596 5.596 17 C 0.587 3.413 18 O -0.532 6.532 19 C -0.002 4.002 20 C -0.027 4.027 21 C -0.074 4.074 22 C -0.094 4.094 23 C -0.097 4.097 24 C -0.091 4.091 25 C -0.080 4.080 26 C 0.072 3.928 27 N -0.203 5.203 28 N -0.186 5.186 29 C 0.109 3.891 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.019 0.981 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.167 0.833 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.146 0.854 45 H 0.077 0.923 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.220 -35.236 -6.033 36.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.378 5.378 10 C 0.023 3.977 11 C -0.152 4.152 12 C -0.114 4.114 13 H 0.104 0.896 14 C -0.170 4.170 15 C -0.011 4.011 16 N -0.327 5.327 17 C 0.372 3.628 18 O -0.409 6.409 19 C -0.136 4.136 20 C -0.058 4.058 21 C -0.083 4.083 22 C -0.113 4.113 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.101 4.101 26 C -0.055 4.055 27 N -0.059 5.059 28 N -0.044 5.044 29 C -0.012 4.012 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.185 0.815 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.164 0.836 45 H 0.095 0.905 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.602 -34.689 -5.448 35.928 hybrid contribution 1.336 0.841 -0.949 1.843 sum 8.939 -33.848 -6.398 35.588 Atomic orbital electron populations 1.69656 1.05089 1.25683 1.57927 1.24740 0.95539 0.97677 1.03145 0.86258 0.78502 0.83535 0.77846 1.21696 1.21306 1.21283 1.19209 0.91037 0.84260 1.42509 0.91255 1.42355 1.05865 1.00075 1.89505 1.20691 0.93592 0.85600 0.97817 1.21684 0.98554 0.92385 1.02623 1.22351 0.97337 0.95096 0.96615 0.89606 1.22816 0.98378 0.94222 1.01577 1.22196 0.89508 0.95189 0.94211 1.48358 1.30856 1.08457 1.45070 1.17069 0.80957 0.84761 0.80016 1.90834 1.39903 1.66524 1.43611 1.22482 0.96157 0.96269 0.98673 1.22607 0.96111 0.92946 0.94103 1.18825 0.97228 0.93749 0.98458 1.21077 0.97790 0.94219 0.98164 1.21159 0.98126 0.94544 0.97860 1.21139 0.93914 1.01073 0.95051 1.20829 0.99490 0.90579 0.99197 1.20456 0.93511 0.96268 0.95310 1.73911 1.18100 0.99228 1.14637 1.73482 1.17016 1.01071 1.12800 1.22531 1.02042 0.78569 0.98108 0.93528 0.78320 0.96306 0.96440 0.91198 0.91544 0.89770 0.90261 0.90494 0.90597 0.81509 0.84041 0.84523 0.84352 0.83595 0.90498 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.78 13.06 55.49 0.72 -28.05 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.91 29.55 -169.99 -5.02 17.89 16 4 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -19.08 5.60 -59.91 -0.34 -19.42 16 10 C 0.15 3.06 6.14 -4.04 -0.02 3.04 16 11 C -0.11 -1.78 4.84 -26.73 -0.13 -1.91 16 12 C -0.09 -1.20 3.04 -88.47 -0.27 -1.47 16 13 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 14 C -0.13 -1.37 6.42 -24.90 -0.16 -1.53 16 15 C 0.11 1.23 5.39 -3.07 -0.02 1.21 16 16 N -0.60 -7.89 3.33 -171.57 -0.57 -8.46 16 17 C 0.59 8.28 7.83 -12.29 -0.10 8.18 16 18 O -0.53 -8.84 16.61 5.32 0.09 -8.76 16 19 C 0.00 -0.03 6.78 -82.89 -0.56 -0.59 16 20 C -0.03 -0.26 9.51 -38.41 -0.37 -0.63 16 21 C -0.07 -0.62 5.75 -106.80 -0.61 -1.23 16 22 C -0.09 -0.49 9.81 -39.53 -0.39 -0.88 16 23 C -0.10 -0.36 9.96 -39.88 -0.40 -0.76 16 24 C -0.09 -0.35 9.94 -39.90 -0.40 -0.74 16 25 C -0.08 -0.48 10.00 -39.52 -0.40 -0.88 16 26 C 0.07 0.65 6.69 -84.79 -0.57 0.09 16 27 N -0.20 -2.26 11.55 32.23 0.37 -1.89 16 28 N -0.19 -2.22 8.00 33.24 0.27 -1.95 16 29 C 0.11 1.50 5.71 -2.50 -0.01 1.49 16 30 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.38 10.38 7.67 -40.82 -0.31 10.06 16 32 H 0.02 0.39 7.59 -51.93 -0.39 0.00 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.05 8.04 -51.93 -0.42 0.63 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.80 8.04 -51.93 -0.42 0.39 16 38 H 0.08 0.84 7.41 -51.93 -0.38 0.45 16 39 H 0.08 0.82 7.53 -51.93 -0.39 0.43 16 40 H 0.17 1.36 7.69 -52.49 -0.40 0.96 16 41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.14 0.14 8.06 -52.49 -0.42 -0.28 16 43 H 0.14 0.14 8.06 -52.48 -0.42 -0.28 16 44 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.08 1.09 7.96 -51.93 -0.41 0.68 16 46 H 0.08 1.27 8.00 -51.93 -0.42 0.85 16 LS Contribution 383.17 15.07 5.77 5.77 Total: -1.00 -35.11 383.17 -9.82 -44.93 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.48 Total: 4.13 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -4.64 Total: -4.20 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.46 Total: -59.77 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.11 -9.82 -44.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700073772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.045 kcal (2) G-P(sol) polarization free energy of solvation -35.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds