Wall clock time and date at job start Sat Apr 11 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00250 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00370 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00122 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.52992 * 109.47319 * 180.02562 * 11 10 9 13 13 H 1.08996 * 110.88998 * 54.29475 * 12 11 10 14 14 C 1.55154 * 111.00598 * 178.17997 * 12 11 10 15 15 C 1.54329 * 102.94397 * 153.57216 * 14 12 11 16 16 N 1.47010 * 107.27105 * 337.80880 * 15 14 12 17 17 C 1.34779 * 125.65008 * 178.89831 * 16 15 14 18 18 O 1.21549 * 120.00497 * 180.02562 * 17 16 15 19 19 C 1.47919 * 119.99723 * 0.02562 * 17 16 15 20 20 C 1.38937 * 119.84356 * 179.72345 * 19 17 16 21 21 C 1.40653 * 117.38642 * 179.75105 * 20 19 17 22 22 C 1.40255 * 122.03625 * 180.19998 * 21 20 19 23 23 C 1.36276 * 119.47129 * 180.32418 * 22 21 20 24 24 C 1.39326 * 120.87208 * 0.02562 * 23 22 21 25 25 C 1.36223 * 121.15835 * 359.93223 * 24 23 22 26 26 C 1.40333 * 119.68248 * 0.08738 * 25 24 23 27 27 N 1.33816 * 121.61977 * 179.91101 * 26 25 24 28 28 N 1.28439 * 121.68730 * 180.02562 * 27 26 25 29 29 C 1.47468 * 108.72580 * 358.97276 * 16 15 14 30 30 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 31 31 H 0.97001 * 120.00088 * 0.02562 * 9 7 2 32 32 H 1.08995 * 109.47424 * 299.99703 * 10 9 7 33 33 H 1.08998 * 109.47492 * 60.00128 * 10 9 7 34 34 H 1.09000 * 109.46887 * 300.00491 * 11 10 9 35 35 H 1.08998 * 109.46846 * 59.99668 * 11 10 9 36 36 H 1.08998 * 110.72596 * 271.93720 * 14 12 11 37 37 H 1.09001 * 110.72118 * 35.21362 * 14 12 11 38 38 H 1.09001 * 109.87743 * 97.22623 * 15 14 12 39 39 H 1.09001 * 109.88170 * 218.23200 * 15 14 12 40 40 H 1.08000 * 121.30892 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.26519 * 0.29404 * 22 21 20 42 42 H 1.08002 * 119.56214 * 179.97438 * 23 22 21 43 43 H 1.08006 * 119.41799 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.15555 * 180.02562 * 25 24 23 45 45 H 1.08998 * 110.34840 * 265.25649 * 29 16 15 46 46 H 1.08995 * 110.40928 * 142.91853 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 2.0580 -3.6568 -0.0170 11 6 1.0637 -4.8197 -0.0228 12 6 1.8286 -6.1447 -0.0281 13 1 2.5370 -6.1878 0.7991 14 6 0.8529 -7.3503 0.0118 15 6 1.6641 -8.4742 -0.6667 16 7 2.6933 -7.8302 -1.4957 17 6 3.6209 -8.4705 -2.2346 18 8 4.4268 -7.8331 -2.8840 19 6 3.6584 -9.9491 -2.2551 20 6 4.6124 -10.6060 -3.0224 21 6 4.6045 -12.0123 -2.9998 22 6 5.5259 -12.7734 -3.7340 23 6 5.4666 -14.1337 -3.6791 24 6 4.5034 -14.7766 -2.9044 25 6 3.5943 -14.0677 -2.1787 26 6 3.6224 -12.6650 -2.2094 27 7 2.7471 -11.9303 -1.5131 28 7 2.7713 -10.6465 -1.5407 29 6 2.5441 -6.3673 -1.3840 30 1 -0.4850 0.8401 0.0041 31 1 0.3555 -2.3880 -0.0113 32 1 2.6846 -3.7106 -0.9072 33 1 2.6847 -3.7186 0.8727 34 1 0.4367 -4.7660 0.8672 35 1 0.4374 -4.7577 -0.9127 36 1 0.6108 -7.6167 1.0407 37 1 -0.0526 -7.1325 -0.5545 38 1 2.1362 -9.0997 0.0909 39 1 1.0075 -9.0802 -1.2910 40 1 5.3341 -10.0582 -3.6103 41 1 6.2760 -12.2852 -4.3385 42 1 6.1750 -14.7212 -4.2442 43 1 4.4780 -15.8561 -2.8777 44 1 2.8549 -14.5827 -1.5834 45 1 1.9339 -5.9850 -2.2022 46 1 3.5214 -5.8848 -1.3809 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700073772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:40 Heat of formation + Delta-G solvation = 38.545559 kcal Electronic energy + Delta-G solvation = -27752.597989 eV Core-core repulsion = 23835.075768 eV Total energy + Delta-G solvation = -3917.522221 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.55558 -41.09153 -39.10835 -38.70213 -36.86416 -34.88294 -34.60624 -33.07438 -32.41763 -31.51773 -30.72873 -28.71857 -26.66102 -26.37127 -25.40206 -24.35293 -23.48830 -22.72003 -21.60033 -21.15358 -19.79214 -19.33095 -19.11202 -17.91072 -17.36498 -17.28296 -16.81837 -16.63343 -16.28897 -15.87265 -15.68420 -15.35210 -15.34932 -15.20955 -14.96906 -14.56923 -14.35113 -14.04275 -13.99667 -13.60811 -13.40330 -13.29640 -13.04693 -12.97062 -12.95092 -12.78580 -12.33724 -12.27080 -12.15671 -11.96823 -11.94346 -11.69599 -11.55956 -11.42259 -11.27673 -10.94011 -10.91639 -10.47607 -9.85572 -9.45411 -9.00038 -7.95613 -5.24507 -1.20707 -0.78512 0.61165 1.17997 1.46412 1.49877 1.56076 1.66439 2.00013 2.55611 2.61484 2.79139 3.13461 3.18689 3.37488 3.38732 3.51099 3.60885 3.71561 3.76345 3.78846 4.10950 4.16070 4.17312 4.30847 4.33957 4.40608 4.47913 4.48948 4.56680 4.64668 4.69909 4.76323 4.87144 4.89852 4.94559 4.98496 5.03130 5.09832 5.16990 5.23556 5.29249 5.31623 5.38527 5.46667 5.49286 5.68497 6.26484 6.27160 6.75387 7.32437 7.33133 8.09722 8.33403 9.27624 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.031631 B = 0.001751 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.987496 B =15990.547754 C =16737.432979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.292 1.292 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.072 0.928 9 N -0.747 5.747 10 C 0.148 3.852 11 C -0.099 4.099 12 C -0.084 4.084 13 H 0.090 0.910 14 C -0.121 4.121 15 C 0.117 3.883 16 N -0.598 5.598 17 C 0.583 3.417 18 O -0.569 6.569 19 C -0.029 4.029 20 C -0.027 4.027 21 C -0.084 4.084 22 C -0.102 4.102 23 C -0.083 4.083 24 C -0.071 4.071 25 C -0.098 4.098 26 C 0.055 3.945 27 N -0.223 5.223 28 N -0.202 5.202 29 C 0.108 3.892 30 H 0.252 0.748 31 H 0.375 0.625 32 H 0.015 0.985 33 H 0.019 0.981 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.175 0.825 41 H 0.163 0.837 42 H 0.175 0.825 43 H 0.176 0.824 44 H 0.158 0.842 45 H 0.070 0.930 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.472 -38.423 -6.390 40.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.218 1.218 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.383 4.383 8 H 0.090 0.910 9 N -0.390 5.390 10 C 0.022 3.978 11 C -0.137 4.137 12 C -0.103 4.103 13 H 0.108 0.892 14 C -0.159 4.159 15 C -0.005 4.005 16 N -0.329 5.329 17 C 0.370 3.630 18 O -0.449 6.449 19 C -0.162 4.162 20 C -0.057 4.057 21 C -0.092 4.092 22 C -0.121 4.121 23 C -0.102 4.102 24 C -0.091 4.091 25 C -0.119 4.119 26 C -0.073 4.073 27 N -0.079 5.079 28 N -0.060 5.060 29 C -0.014 4.014 30 H 0.061 0.939 31 H 0.207 0.793 32 H 0.033 0.967 33 H 0.037 0.963 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.192 0.808 41 H 0.181 0.819 42 H 0.192 0.808 43 H 0.194 0.806 44 H 0.176 0.824 45 H 0.088 0.912 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.863 -37.915 -5.788 39.365 hybrid contribution 1.059 1.551 -0.918 2.091 sum 9.921 -36.364 -6.706 38.285 Atomic orbital electron populations 1.69810 1.06525 1.26194 1.59313 1.25583 0.96478 1.01113 1.03554 0.85199 0.77238 0.79092 0.78157 1.21804 1.20321 1.20575 1.19614 0.91470 0.85612 1.41596 0.90974 1.42575 1.05699 1.01270 1.89449 1.20866 0.94410 0.85188 0.97379 1.21511 0.97557 0.91829 1.02788 1.22205 0.97642 0.94523 0.95963 0.89153 1.22813 0.97692 0.92379 1.02998 1.22251 0.89002 0.95283 0.93980 1.48450 1.31136 1.08193 1.45078 1.17450 0.80414 0.85796 0.79350 1.90788 1.41330 1.67576 1.45202 1.22206 0.98070 0.94951 1.00978 1.22768 0.95519 0.93935 0.93481 1.19061 0.97952 0.93198 0.98983 1.21412 0.97589 0.95073 0.98030 1.21680 0.97871 0.94046 0.96637 1.21652 0.91987 1.02887 0.92580 1.21105 1.01001 0.89274 1.00560 1.20872 0.93451 0.97578 0.95353 1.73790 1.19352 0.98985 1.15785 1.73369 1.17477 1.01632 1.13504 1.22443 1.01079 0.79231 0.98647 0.93925 0.79312 0.96708 0.96335 0.90634 0.91720 0.87538 0.89603 0.90172 0.90326 0.80781 0.81915 0.80781 0.80626 0.82448 0.91190 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 2 C -0.07 -4.43 5.50 84.86 0.47 -3.97 16 3 Si 0.97 47.41 29.55 68.60 2.03 49.43 16 4 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.25 -14.63 9.99 84.03 0.84 -13.79 16 8 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.75 -39.49 5.60 -343.46 -1.92 -41.41 16 10 C 0.15 6.10 6.14 86.38 0.53 6.63 16 11 C -0.10 -3.07 4.84 30.59 0.15 -2.92 16 12 C -0.08 -2.10 3.04 -9.40 -0.03 -2.13 16 13 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 14 C -0.12 -2.38 6.42 31.78 0.20 -2.17 16 15 C 0.12 2.57 5.39 86.73 0.47 3.03 16 16 N -0.60 -16.48 3.33 -815.00 -2.71 -19.19 16 17 C 0.58 17.49 7.83 86.81 0.68 18.17 16 18 O -0.57 -20.19 16.61 -3.87 -0.06 -20.26 16 19 C -0.03 -0.73 6.78 41.62 0.28 -0.45 16 20 C -0.03 -0.54 9.51 23.03 0.22 -0.32 16 21 C -0.08 -1.32 5.75 -21.28 -0.12 -1.44 16 22 C -0.10 -0.80 9.81 22.30 0.22 -0.59 16 23 C -0.08 -0.24 9.96 22.07 0.22 -0.02 16 24 C -0.07 -0.24 9.94 22.06 0.22 -0.02 16 25 C -0.10 -0.97 10.00 22.31 0.22 -0.74 16 26 C 0.05 0.96 6.69 40.27 0.27 1.23 16 27 N -0.22 -5.07 11.55 -51.93 -0.60 -5.67 16 28 N -0.20 -5.01 8.00 -48.75 -0.39 -5.40 16 29 C 0.11 3.10 5.71 86.85 0.50 3.60 16 30 H 0.25 15.22 8.31 -92.70 -0.77 14.45 16 31 H 0.37 20.73 7.67 -92.71 -0.71 20.02 16 32 H 0.01 0.63 7.59 -2.39 -0.02 0.61 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.06 2.04 8.04 -2.39 -0.02 2.02 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 1.61 8.04 -2.39 -0.02 1.60 16 38 H 0.08 1.74 7.41 -2.39 -0.02 1.72 16 39 H 0.08 1.71 7.53 -2.39 -0.02 1.69 16 40 H 0.17 2.99 7.69 -2.91 -0.02 2.97 16 41 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 42 H 0.17 -0.71 8.06 -2.91 -0.02 -0.73 16 43 H 0.18 -0.66 8.06 -2.91 -0.02 -0.69 16 44 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 45 H 0.07 2.08 7.96 -2.39 -0.02 2.06 16 46 H 0.07 2.12 8.00 -2.39 -0.02 2.10 16 Total: -1.00 -78.66 383.17 2.25 -76.41 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.29 Total: 22.15 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 5.33 Total: 4.08 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -5.34 Total: -131.82 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.06 Total: -20.26 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.43 kcal Total: -78.66 2.25 -76.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700073772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.958 kcal (2) G-P(sol) polarization free energy of solvation -78.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds