Wall clock time and date at job start Sat Apr 11 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 119.99629 * 2 1 4 4 H 1.48491 * 109.47165 * 269.99731 * 3 2 1 5 5 H 1.48501 * 109.46980 * 29.99991 * 3 2 1 6 6 H 1.48505 * 109.46688 * 149.99648 * 3 2 1 7 7 C 1.38807 * 120.00401 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00252 * 190.84725 * 7 2 1 9 9 N 1.36937 * 120.00254 * 10.85042 * 7 2 1 10 10 C 1.46680 * 121.32892 * 28.06095 * 9 7 2 11 11 C 1.50809 * 109.68702 * 135.69965 * 10 9 7 12 12 C 1.38835 * 117.81228 * 191.35789 * 11 10 9 13 13 C 1.37962 * 120.50733 * 180.46992 * 12 11 10 14 14 C 1.38264 * 119.71949 * 0.08370 * 13 12 11 15 15 C 1.37916 * 119.82268 * 359.75652 * 14 13 12 16 16 C 1.37667 * 122.34415 * 11.46034 * 11 10 9 17 17 C 1.50602 * 122.86086 * 358.56355 * 16 11 10 18 18 C 1.47236 * 121.33213 * 208.09264 * 9 7 2 19 19 H 1.08998 * 109.77759 * 124.59564 * 18 9 7 20 20 C 1.52998 * 109.77305 * 3.79842 * 18 9 7 21 21 N 1.46504 * 109.47594 * 55.00110 * 20 18 9 22 22 C 1.34773 * 120.00089 * 179.97438 * 21 20 18 23 23 O 1.21282 * 120.00083 * 0.02562 * 22 21 20 24 24 C 1.50703 * 119.99854 * 179.97438 * 22 21 20 25 25 C 1.50699 * 109.47245 * 180.02562 * 24 22 21 26 26 C 1.39867 * 125.90093 * 124.99814 * 25 24 22 27 27 C 1.35315 * 107.91859 * 179.97438 * 26 25 24 28 28 N 1.34949 * 107.75034 * 0.02562 * 27 26 25 29 29 H 0.96995 * 126.04092 * 179.97438 * 28 27 26 30 30 N 1.30843 * 125.89513 * 304.69481 * 25 24 22 31 31 H 0.96998 * 120.00694 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.43862 * 255.77519 * 10 9 7 33 33 H 1.09004 * 109.43230 * 15.68258 * 10 9 7 34 34 H 1.08006 * 119.74955 * 0.49433 * 12 11 10 35 35 H 1.08002 * 120.14202 * 180.08328 * 13 12 11 36 36 H 1.07997 * 120.08779 * 179.77608 * 14 13 12 37 37 H 1.07995 * 119.70738 * 179.97438 * 15 14 13 38 38 H 1.09000 * 109.20462 * 259.88259 * 17 16 11 39 39 H 1.08997 * 109.20253 * 140.57641 * 17 16 11 40 40 H 1.09006 * 109.46984 * 175.00122 * 20 18 9 41 41 H 1.08999 * 109.47414 * 294.99717 * 20 18 9 42 42 H 0.97003 * 119.99748 * 359.97438 * 21 20 18 43 43 H 1.09006 * 109.47114 * 300.00275 * 24 22 21 44 44 H 1.08999 * 109.47146 * 59.99785 * 24 22 21 45 45 H 1.08000 * 126.03879 * 0.02562 * 26 25 24 46 46 H 1.08004 * 126.12822 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0758 -1.2103 0.1766 9 7 1.3441 -2.3775 -0.2222 10 6 0.1201 -2.4194 -1.0294 11 6 0.1766 -3.5908 -1.9776 12 6 -0.7770 -3.6558 -2.9845 13 6 -0.7829 -4.7080 -3.8767 14 6 0.1674 -5.7062 -3.7657 15 6 1.1173 -5.6409 -2.7679 16 6 1.1292 -4.5789 -1.8715 17 6 2.2119 -4.5612 -0.8248 18 6 1.8273 -3.6498 0.3397 19 1 1.0377 -4.1167 0.9283 20 6 3.0503 -3.3942 1.2228 21 7 2.7157 -2.3987 2.2443 22 6 3.6454 -2.0149 3.1413 23 8 4.7593 -2.4932 3.1026 24 6 3.3013 -0.9904 4.1916 25 6 4.5059 -0.7388 5.0616 26 6 5.0922 0.5064 5.3104 27 6 6.1461 0.3127 6.1367 28 7 6.2243 -1.0083 6.4009 29 1 6.8845 -1.4391 6.9661 30 7 5.1805 -1.6469 5.7190 31 1 -0.4851 0.8400 -0.0004 32 1 -0.7438 -2.5252 -0.3732 33 1 0.0306 -1.4953 -1.6006 34 1 -1.5198 -2.8764 -3.0703 35 1 -1.5267 -4.7520 -4.6585 36 1 0.1661 -6.5345 -4.4586 37 1 1.8584 -6.4218 -2.6826 38 1 3.1376 -4.1995 -1.2725 39 1 2.3665 -5.5736 -0.4517 40 1 3.3501 -4.3241 1.7062 41 1 3.8708 -3.0230 0.6088 42 1 1.8249 -2.0159 2.2750 43 1 3.0022 -0.0605 3.7080 44 1 2.4804 -1.3610 4.8054 45 1 4.7615 1.4550 4.9138 46 1 6.8069 1.0782 6.5160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700227621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:50 Heat of formation + Delta-G solvation = 89.104742 kcal Electronic energy + Delta-G solvation = -29371.232761 eV Core-core repulsion = 25455.902951 eV Total energy + Delta-G solvation = -3915.329811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01920 -39.44631 -38.71997 -36.52314 -33.63252 -32.90090 -32.67852 -31.40952 -30.30360 -29.79753 -29.09843 -28.17657 -25.61489 -25.11336 -22.82959 -21.67056 -21.53104 -21.08041 -20.22398 -19.27337 -18.89834 -18.01656 -16.83398 -16.22521 -15.91925 -15.46391 -15.19660 -14.73825 -14.55447 -14.32338 -14.23736 -13.95662 -13.72959 -13.40853 -13.32013 -13.00964 -12.69563 -12.64903 -12.51485 -12.42179 -12.13501 -11.84166 -11.53813 -11.47874 -11.06924 -10.90383 -10.83046 -10.69597 -10.49222 -10.45621 -10.18591 -9.98934 -9.69774 -9.37883 -9.06933 -8.76564 -8.59354 -8.24615 -8.15356 -7.84438 -6.81119 -5.91243 -3.35543 1.87529 1.95166 2.03933 2.88220 3.00451 3.30539 3.36198 3.39389 3.41988 3.98793 4.29722 4.38323 4.76898 4.91152 5.16381 5.23038 5.30216 5.37410 5.39849 5.47969 5.54421 5.59253 5.68918 5.74757 5.86964 5.92053 5.94590 5.96838 6.06097 6.09340 6.14341 6.21126 6.33676 6.40344 6.56578 6.63949 6.74426 6.84754 6.95177 6.96940 7.14657 7.19426 7.25553 7.37703 7.51111 7.64597 7.73858 7.84967 8.26348 8.37208 8.99303 9.08230 9.67561 10.26271 11.17734 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014751 B = 0.003238 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.673904 B = 8646.221255 C =10126.394274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.007 3.993 3 Si 0.895 3.105 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.588 5.588 10 C 0.208 3.792 11 C -0.078 4.078 12 C -0.124 4.124 13 C -0.131 4.131 14 C -0.140 4.140 15 C -0.128 4.128 16 C -0.068 4.068 17 C -0.091 4.091 18 C 0.158 3.842 19 H 0.042 0.958 20 C 0.139 3.861 21 N -0.695 5.695 22 C 0.513 3.487 23 O -0.551 6.551 24 C -0.064 4.064 25 C 0.096 3.904 26 C -0.265 4.265 27 C 0.048 3.952 28 N -0.483 5.483 29 H 0.435 0.565 30 N -0.264 5.264 31 H 0.256 0.744 32 H 0.042 0.958 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.416 0.584 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.147 0.853 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.364 -3.464 5.230 7.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.191 4.191 3 Si 0.724 3.276 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.201 1.201 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.312 5.312 10 C 0.083 3.917 11 C -0.079 4.079 12 C -0.142 4.142 13 C -0.149 4.149 14 C -0.159 4.159 15 C -0.146 4.146 16 C -0.068 4.068 17 C -0.130 4.130 18 C 0.051 3.949 19 H 0.060 0.940 20 C 0.015 3.985 21 N -0.346 5.346 22 C 0.297 3.703 23 O -0.429 6.429 24 C -0.105 4.105 25 C -0.072 4.072 26 C -0.294 4.294 27 C -0.099 4.099 28 N -0.191 5.191 29 H 0.278 0.722 30 N -0.087 5.087 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.254 0.746 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.165 0.835 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 4.149 -4.844 5.497 8.420 hybrid contribution 0.291 1.853 -0.243 1.891 sum 4.440 -2.991 5.254 7.501 Atomic orbital electron populations 1.69951 1.05041 1.25688 1.54353 1.25026 0.95321 0.98021 1.00765 0.86391 0.79320 0.83824 0.78019 1.21506 1.21541 1.20102 1.19151 0.91381 0.83168 1.43582 0.90954 1.44043 1.28468 1.02327 1.56360 1.19778 0.88643 0.92984 0.90333 1.21026 0.93201 0.97249 0.96436 1.21119 0.99196 0.98388 0.95504 1.20950 0.99193 0.95218 0.99522 1.20848 0.96692 0.99180 0.99139 1.21128 0.99051 0.98423 0.95983 1.19495 0.96517 0.93973 0.96796 1.20888 0.96881 0.99510 0.95734 1.20719 0.93991 0.88596 0.91608 0.94010 1.21187 0.97448 0.90710 0.89202 1.45854 1.16016 1.42796 1.29978 1.20133 0.85130 0.82695 0.82300 1.90670 1.21737 1.56719 1.73819 1.20058 0.94436 1.01096 0.94955 1.21655 0.96988 0.91307 0.97232 1.21448 1.00983 0.99019 1.07970 1.22480 1.00011 0.87128 1.00286 1.46365 1.26407 1.05514 1.40803 0.72154 1.77400 0.99748 1.19916 1.11627 0.93432 0.93989 0.88582 0.86476 0.87020 0.87156 0.87109 0.90828 0.91892 0.92611 0.91773 0.74647 0.86794 0.87566 0.83529 0.81007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.19 11.06 55.49 0.61 -22.58 16 2 C 0.01 0.18 5.08 -17.44 -0.09 0.09 16 3 Si 0.89 20.19 29.57 -169.99 -5.03 15.16 16 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.24 -5.81 6.96 -15.06 -0.10 -5.91 16 8 H 0.07 1.80 6.19 -52.48 -0.32 1.47 16 9 N -0.59 -12.91 2.85 -166.39 -0.47 -13.39 16 10 C 0.21 4.56 4.80 -5.04 -0.02 4.54 16 11 C -0.08 -1.50 5.82 -104.56 -0.61 -2.11 16 12 C -0.12 -2.14 9.62 -39.46 -0.38 -2.52 16 13 C -0.13 -1.99 10.05 -39.67 -0.40 -2.39 16 14 C -0.14 -2.07 10.05 -39.69 -0.40 -2.47 16 15 C -0.13 -2.01 9.59 -39.42 -0.38 -2.39 16 16 C -0.07 -1.22 5.76 -104.60 -0.60 -1.82 16 17 C -0.09 -1.55 5.21 -28.04 -0.15 -1.69 16 18 C 0.16 2.96 3.02 -67.64 -0.20 2.76 16 19 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 20 C 0.14 2.57 4.45 -4.04 -0.02 2.55 16 21 N -0.69 -12.95 4.01 -60.29 -0.24 -13.19 16 22 C 0.51 9.75 7.82 -10.99 -0.09 9.66 16 23 O -0.55 -12.28 15.57 5.56 0.09 -12.19 16 24 C -0.06 -1.00 6.28 -29.03 -0.18 -1.18 16 25 C 0.10 1.57 6.01 -82.40 -0.50 1.07 16 26 C -0.26 -3.64 10.72 -40.01 -0.43 -4.07 16 27 C 0.05 0.53 11.99 -17.22 -0.21 0.33 16 28 N -0.48 -5.99 7.36 30.45 0.22 -5.77 16 29 H 0.44 3.77 8.96 -182.61 -1.64 2.14 16 30 N -0.26 -4.45 12.06 33.67 0.41 -4.04 16 31 H 0.26 6.47 8.31 -40.82 -0.34 6.14 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 2.37 6.46 -51.93 -0.34 2.03 16 34 H 0.12 1.90 8.05 -52.48 -0.42 1.48 16 35 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 36 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.11 1.49 8.05 -52.49 -0.42 1.07 16 38 H 0.07 1.30 8.01 -51.93 -0.42 0.88 16 39 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.30 7.31 -51.93 -0.38 0.92 16 42 H 0.42 7.93 7.34 -40.82 -0.30 7.63 16 43 H 0.11 1.67 8.12 -51.93 -0.42 1.25 16 44 H 0.11 1.42 8.14 -51.93 -0.42 0.99 16 45 H 0.15 1.76 8.06 -52.49 -0.42 1.33 16 46 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -31.19 376.75 -11.08 -42.27 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -7.60 Total: 13.60 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -4.75 Total: -5.56 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.53 Total: -58.96 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.19 -11.08 -42.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700227621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.376 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds