Wall clock time and date at job start Sat Apr 11 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00471 * 2 1 4 4 H 1.48500 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46753 * 299.99932 * 3 2 1 6 6 H 1.48494 * 109.47002 * 59.99877 * 3 2 1 7 7 C 1.38824 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99649 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00264 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47513 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47372 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47251 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47242 * 55.00305 * 13 12 11 15 15 N 1.46499 * 109.47037 * 295.00241 * 13 12 11 16 16 C 1.34777 * 119.99802 * 155.00168 * 15 13 12 17 17 O 1.21475 * 119.99879 * 359.97438 * 16 15 13 18 18 C 1.48449 * 119.99816 * 179.97438 * 16 15 13 19 19 C 1.39541 * 120.55050 * 179.72067 * 18 16 15 20 20 C 1.38758 * 118.26234 * 179.80476 * 19 18 16 21 21 N 1.32205 * 119.15307 * 0.47061 * 20 19 18 22 22 C 1.31882 * 121.03041 * 359.74888 * 21 20 19 23 23 N 1.31587 * 121.92095 * 0.02562 * 22 21 20 24 24 C 1.50702 * 109.47066 * 174.99706 * 13 12 11 25 25 C 1.38234 * 120.00271 * 259.99910 * 24 13 12 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 13 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 79.98038 * 24 13 12 30 30 H 0.97002 * 119.99486 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99877 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47109 * 59.99747 * 10 9 7 33 33 H 1.09000 * 109.47278 * 299.99875 * 10 9 7 34 34 H 1.09006 * 109.46916 * 59.99734 * 11 10 9 35 35 H 1.09006 * 109.47184 * 300.00323 * 11 10 9 36 36 H 1.08997 * 109.47102 * 59.99884 * 12 11 10 37 37 H 1.09000 * 109.47426 * 299.99926 * 12 11 10 38 38 H 0.96998 * 119.99841 * 335.00018 * 15 13 12 39 39 H 1.07997 * 120.86552 * 359.97438 * 19 18 16 40 40 H 1.08005 * 120.42262 * 180.23538 * 20 19 18 41 41 H 1.08001 * 119.04036 * 180.02562 * 22 21 20 42 42 H 1.08001 * 119.99769 * 359.97438 * 25 24 13 43 43 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 45 45 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 46 46 H 1.07997 * 120.00489 * 0.02562 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8285 -6.1447 0.0005 13 6 0.8342 -7.3077 0.0018 14 1 0.1492 -7.2010 -0.8393 15 7 0.0746 -7.2992 1.2545 16 6 -1.1501 -7.8599 1.3036 17 8 -1.6241 -8.3717 0.3092 18 6 -1.9196 -7.8518 2.5731 19 6 -3.1909 -8.4238 2.6355 20 6 -3.8662 -8.3934 3.8473 21 7 -3.2914 -7.8201 4.8907 22 6 -2.0899 -7.2846 4.7960 23 7 -1.4108 -7.2940 3.6690 24 6 1.5835 -8.6093 -0.1227 25 6 1.6678 -9.2438 -1.3479 26 6 2.3555 -10.4375 -1.4622 27 6 2.9593 -10.9964 -0.3514 28 6 2.8759 -10.3614 0.8736 29 6 2.1867 -9.1685 0.9883 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6845 -3.7146 0.8905 33 1 2.6845 -3.7147 -0.8894 34 1 0.4366 -4.7621 -0.8886 35 1 0.4373 -4.7618 0.8914 36 1 2.4558 -6.2026 0.8900 37 1 2.4546 -6.2025 -0.8899 38 1 0.4530 -6.8902 2.0484 39 1 -3.6363 -8.8806 1.7642 40 1 -4.8505 -8.8292 3.9359 41 1 -1.6506 -6.8249 5.6690 42 1 1.1964 -8.8069 -2.2159 43 1 2.4218 -10.9331 -2.4195 44 1 3.4929 -11.9313 -0.4397 45 1 3.3472 -10.7982 1.7416 46 1 2.1207 -8.6729 1.9455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700709023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:55 Heat of formation + Delta-G solvation = 45.312721 kcal Electronic energy + Delta-G solvation = -28197.256715 eV Core-core repulsion = 24280.027940 eV Total energy + Delta-G solvation = -3917.228775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.51354 -40.19903 -38.89979 -36.57502 -34.87591 -34.26792 -32.56861 -32.42007 -31.53851 -30.98836 -30.11924 -27.28995 -25.72378 -24.71283 -24.10834 -22.82429 -22.35346 -21.66348 -20.81670 -20.50435 -18.74832 -17.95671 -17.20020 -16.93158 -16.30332 -15.85236 -15.78488 -15.72833 -15.33489 -14.80250 -14.67717 -14.52919 -14.41072 -14.08314 -13.88577 -13.62203 -13.52865 -13.28942 -13.01943 -12.92250 -12.23918 -11.85690 -11.68879 -11.33586 -11.26287 -11.16968 -11.13406 -10.87918 -10.82681 -10.66027 -10.55148 -10.39797 -10.11830 -10.00335 -9.70732 -9.67844 -9.33032 -9.04330 -8.86088 -8.84097 -6.90144 -5.74935 -3.03487 0.16371 0.56008 1.18262 1.27358 2.51418 2.73245 3.44184 3.49521 3.50908 3.52041 3.56860 3.67810 3.77293 4.23391 4.48492 4.51938 4.63588 4.65841 4.72149 4.83073 4.93600 4.97764 5.12436 5.16143 5.25014 5.33200 5.37270 5.45872 5.57013 5.63841 5.82691 5.83956 5.88413 5.90049 6.03552 6.15992 6.20166 6.29385 6.34822 6.36368 6.40502 6.41520 6.53780 6.84928 6.86724 6.89945 7.23488 7.59914 7.71807 7.89704 8.44070 9.55008 10.13981 10.48206 11.48149 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007520 B = 0.003042 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3722.508343 B = 9201.795347 C =12105.513153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.734 5.734 10 C 0.154 3.846 11 C -0.126 4.126 12 C -0.117 4.117 13 C 0.184 3.816 14 H 0.101 0.899 15 N -0.694 5.694 16 C 0.572 3.428 17 O -0.521 6.521 18 C 0.134 3.866 19 C -0.171 4.171 20 C 0.150 3.850 21 N -0.507 5.507 22 C 0.296 3.704 23 N -0.494 5.494 24 C -0.090 4.090 25 C -0.103 4.103 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.105 4.105 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.414 0.586 39 H 0.161 0.839 40 H 0.177 0.823 41 H 0.204 0.796 42 H 0.124 0.876 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.119 0.881 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.423 -25.533 5.359 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.026 3.974 11 C -0.164 4.164 12 C -0.155 4.155 13 C 0.080 3.920 14 H 0.119 0.881 15 N -0.345 5.345 16 C 0.355 3.645 17 O -0.396 6.396 18 C -0.014 4.014 19 C -0.193 4.193 20 C -0.018 4.018 21 N -0.221 5.221 22 C 0.008 3.992 23 N -0.210 5.210 24 C -0.091 4.091 25 C -0.121 4.121 26 C -0.138 4.138 27 C -0.141 4.141 28 C -0.141 4.141 29 C -0.124 4.124 30 H 0.064 0.936 31 H 0.216 0.784 32 H 0.035 0.965 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.251 0.749 39 H 0.178 0.822 40 H 0.194 0.806 41 H 0.220 0.780 42 H 0.142 0.858 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.170 -25.331 5.394 25.926 hybrid contribution -0.078 0.776 -0.253 0.819 sum -1.248 -24.556 5.142 25.119 Atomic orbital electron populations 1.69674 1.05130 1.25489 1.57968 1.24755 0.95531 0.97719 1.03139 0.86115 0.78786 0.84122 0.77185 1.20538 1.21874 1.21869 1.19289 0.91059 0.84212 1.42390 0.91146 1.42379 1.05887 1.00105 1.89472 1.20624 0.93471 0.85571 0.97707 1.21751 0.98911 0.93318 1.02413 1.21836 0.97259 0.92721 1.03699 1.20056 0.92776 0.91920 0.87280 0.88087 1.45874 1.16534 1.57693 1.14385 1.17773 0.81546 0.78856 0.86277 1.90801 1.69351 1.44837 1.34588 1.21663 0.92956 0.93544 0.93219 1.23006 0.95313 0.99781 1.01244 1.23375 0.99505 0.91541 0.87340 1.68385 1.11858 1.09177 1.32728 1.25048 0.86992 0.92155 0.94983 1.68366 1.37271 1.15676 0.99700 1.20199 0.98375 0.96610 0.93938 1.21029 0.98754 0.95216 0.97138 1.21119 0.98066 0.95984 0.98666 1.21136 1.00013 0.99935 0.93064 1.21113 0.99567 0.95758 0.97622 1.20942 0.97267 0.95900 0.98264 0.93594 0.78352 0.96465 0.96434 0.91819 0.91836 0.90981 0.89815 0.74935 0.82167 0.80618 0.77952 0.85808 0.86081 0.86328 0.86271 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.01 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 6 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -19.02 5.60 -59.91 -0.34 -19.36 16 10 C 0.15 3.08 6.26 -4.05 -0.03 3.06 16 11 C -0.13 -1.97 5.21 -26.74 -0.14 -2.11 16 12 C -0.12 -1.40 4.73 -26.73 -0.13 -1.52 16 13 C 0.18 2.14 2.17 -69.08 -0.15 1.99 16 14 H 0.10 1.30 7.44 -51.93 -0.39 0.91 16 15 N -0.69 -8.01 3.76 -55.68 -0.21 -8.22 16 16 C 0.57 7.35 7.79 -12.05 -0.09 7.26 16 17 O -0.52 -7.91 16.09 5.39 0.09 -7.82 16 18 C 0.13 1.53 6.79 -82.64 -0.56 0.97 16 19 C -0.17 -1.59 9.72 -38.90 -0.38 -1.97 16 20 C 0.15 1.19 11.31 -17.20 -0.19 1.00 16 21 N -0.51 -4.84 10.42 -14.59 -0.15 -4.99 16 22 C 0.30 2.78 12.27 -92.26 -1.13 1.65 16 23 N -0.49 -5.36 9.70 -11.14 -0.11 -5.46 16 24 C -0.09 -1.01 4.91 -104.62 -0.51 -1.53 16 25 C -0.10 -1.11 9.67 -39.59 -0.38 -1.49 16 26 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 27 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 28 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 29 C -0.11 -1.11 9.32 -39.58 -0.37 -1.48 16 30 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.38 10.46 7.67 -40.82 -0.31 10.15 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.41 4.42 7.99 -40.82 -0.33 4.10 16 39 H 0.16 1.31 7.74 -52.49 -0.41 0.90 16 40 H 0.18 0.76 8.06 -52.48 -0.42 0.33 16 41 H 0.20 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.12 1.21 8.04 -52.49 -0.42 0.79 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.14 7.72 -52.49 -0.41 0.73 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -34.88 396.78 -10.98 -45.86 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.43 Total: 10.75 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -5.51 Total: -6.37 kcal Atomic # 7 Polarization: -65.96 SS G_CDS: -0.08 Total: -66.04 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.82 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.88 -10.98 -45.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700709023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.168 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds