Wall clock time and date at job start Sat Apr 11 2020 06:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86804 * 120.00471 * 2 1 4 4 H 1.48500 * 109.47152 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46753 * 299.99932 * 3 2 1 6 6 H 1.48494 * 109.47002 * 59.99877 * 3 2 1 7 7 C 1.38824 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99649 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00264 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47513 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.47372 * 179.97438 * 11 10 9 13 13 C 1.53005 * 109.47251 * 179.97438 * 12 11 10 14 14 H 1.08999 * 109.47242 * 55.00305 * 13 12 11 15 15 N 1.46499 * 109.47037 * 295.00241 * 13 12 11 16 16 C 1.34777 * 119.99802 * 155.00168 * 15 13 12 17 17 O 1.21475 * 119.99879 * 359.97438 * 16 15 13 18 18 C 1.48449 * 119.99816 * 179.97438 * 16 15 13 19 19 C 1.39541 * 120.55050 * 179.72067 * 18 16 15 20 20 C 1.38758 * 118.26234 * 179.80476 * 19 18 16 21 21 N 1.32205 * 119.15307 * 0.47061 * 20 19 18 22 22 C 1.31882 * 121.03041 * 359.74888 * 21 20 19 23 23 N 1.31587 * 121.92095 * 0.02562 * 22 21 20 24 24 C 1.50702 * 109.47066 * 174.99706 * 13 12 11 25 25 C 1.38234 * 120.00271 * 259.99910 * 24 13 12 26 26 C 1.38230 * 119.99880 * 179.97438 * 25 24 13 27 27 C 1.38235 * 120.00326 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99814 * 359.97438 * 27 26 25 29 29 C 1.38234 * 119.99485 * 79.98038 * 24 13 12 30 30 H 0.97002 * 119.99486 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99877 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47109 * 59.99747 * 10 9 7 33 33 H 1.09000 * 109.47278 * 299.99875 * 10 9 7 34 34 H 1.09006 * 109.46916 * 59.99734 * 11 10 9 35 35 H 1.09006 * 109.47184 * 300.00323 * 11 10 9 36 36 H 1.08997 * 109.47102 * 59.99884 * 12 11 10 37 37 H 1.09000 * 109.47426 * 299.99926 * 12 11 10 38 38 H 0.96998 * 119.99841 * 335.00018 * 15 13 12 39 39 H 1.07997 * 120.86552 * 359.97438 * 19 18 16 40 40 H 1.08005 * 120.42262 * 180.23538 * 20 19 18 41 41 H 1.08001 * 119.04036 * 180.02562 * 22 21 20 42 42 H 1.08001 * 119.99769 * 359.97438 * 25 24 13 43 43 H 1.08000 * 120.00376 * 180.02562 * 26 25 24 44 44 H 1.08000 * 120.00616 * 179.72578 * 27 26 25 45 45 H 1.08001 * 120.00299 * 179.97438 * 28 27 26 46 46 H 1.07997 * 120.00489 * 0.02562 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 6 1.0636 -4.8197 0.0012 12 6 1.8285 -6.1447 0.0005 13 6 0.8342 -7.3077 0.0018 14 1 0.1492 -7.2010 -0.8393 15 7 0.0746 -7.2992 1.2545 16 6 -1.1501 -7.8599 1.3036 17 8 -1.6241 -8.3717 0.3092 18 6 -1.9196 -7.8518 2.5731 19 6 -3.1909 -8.4238 2.6355 20 6 -3.8662 -8.3934 3.8473 21 7 -3.2914 -7.8201 4.8907 22 6 -2.0899 -7.2846 4.7960 23 7 -1.4108 -7.2940 3.6690 24 6 1.5835 -8.6093 -0.1227 25 6 1.6678 -9.2438 -1.3479 26 6 2.3555 -10.4375 -1.4622 27 6 2.9593 -10.9964 -0.3514 28 6 2.8759 -10.3614 0.8736 29 6 2.1867 -9.1685 0.9883 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3881 0.0005 32 1 2.6845 -3.7146 0.8905 33 1 2.6845 -3.7147 -0.8894 34 1 0.4366 -4.7621 -0.8886 35 1 0.4373 -4.7618 0.8914 36 1 2.4558 -6.2026 0.8900 37 1 2.4546 -6.2025 -0.8899 38 1 0.4530 -6.8902 2.0484 39 1 -3.6363 -8.8806 1.7642 40 1 -4.8505 -8.8292 3.9359 41 1 -1.6506 -6.8249 5.6690 42 1 1.1964 -8.8069 -2.2159 43 1 2.4218 -10.9331 -2.4195 44 1 3.4929 -11.9313 -0.4397 45 1 3.3472 -10.7982 1.7416 46 1 2.1207 -8.6729 1.9455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700709023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:54 Heat of formation + Delta-G solvation = 24.338484 kcal Electronic energy + Delta-G solvation = -28198.166226 eV Core-core repulsion = 24280.027940 eV Total energy + Delta-G solvation = -3918.138287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.28694 -41.07086 -39.75261 -37.78441 -36.46348 -35.08947 -34.15594 -33.18075 -32.61837 -31.75917 -31.63978 -28.57204 -26.77077 -25.69352 -25.34397 -23.89805 -23.52247 -22.53976 -22.24242 -21.41518 -19.62709 -19.13560 -18.70038 -17.87855 -17.26453 -16.80347 -16.60715 -16.51849 -16.45916 -16.15661 -15.90863 -15.55752 -15.33569 -15.27386 -15.21677 -14.76111 -14.57199 -14.31468 -14.20141 -13.92857 -13.51953 -13.23511 -12.95143 -12.77566 -12.58460 -12.19155 -12.09746 -12.05499 -11.95825 -11.93225 -11.90194 -11.83738 -11.66472 -11.54370 -10.95545 -10.85422 -10.44962 -10.30531 -9.80428 -9.63916 -9.01763 -7.96711 -5.26056 -0.63885 -0.11573 0.40763 0.51458 1.46578 1.47758 1.58060 1.60038 1.84202 2.54958 2.74605 2.78991 2.90632 3.16347 3.37246 3.50012 3.54346 3.74992 3.85696 3.95834 4.00923 4.05805 4.11309 4.17648 4.29720 4.37841 4.49994 4.52850 4.61114 4.63101 4.70612 4.73154 4.81749 4.85596 5.03039 5.08924 5.13379 5.22595 5.22969 5.38766 5.39104 5.49084 5.57425 5.62672 5.66082 5.74113 6.11563 6.25799 6.30551 6.85088 6.96804 7.31402 8.08029 8.30429 9.27311 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007520 B = 0.003042 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3722.508343 B = 9201.795347 C =12105.513153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.750 5.750 10 C 0.151 3.849 11 C -0.111 4.111 12 C -0.103 4.103 13 C 0.191 3.809 14 H 0.085 0.915 15 N -0.688 5.688 16 C 0.569 3.431 17 O -0.552 6.552 18 C 0.112 3.888 19 C -0.173 4.173 20 C 0.159 3.841 21 N -0.518 5.518 22 C 0.290 3.710 23 N -0.508 5.508 24 C -0.103 4.103 25 C -0.120 4.120 26 C -0.126 4.126 27 C -0.126 4.126 28 C -0.128 4.128 29 C -0.116 4.116 30 H 0.251 0.749 31 H 0.372 0.628 32 H 0.024 0.976 33 H 0.021 0.979 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.418 0.582 39 H 0.169 0.831 40 H 0.215 0.785 41 H 0.229 0.771 42 H 0.125 0.875 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.139 0.861 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -26.803 6.184 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.804 3.196 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.378 4.378 8 H 0.095 0.905 9 N -0.392 5.392 10 C 0.025 3.975 11 C -0.149 4.149 12 C -0.141 4.141 13 C 0.087 3.913 14 H 0.103 0.897 15 N -0.338 5.338 16 C 0.353 3.647 17 O -0.429 6.429 18 C -0.035 4.035 19 C -0.195 4.195 20 C -0.009 4.009 21 N -0.232 5.232 22 C 0.002 3.998 23 N -0.224 5.224 24 C -0.104 4.104 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.144 4.144 28 C -0.146 4.146 29 C -0.134 4.134 30 H 0.060 0.940 31 H 0.203 0.797 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.256 0.744 39 H 0.186 0.814 40 H 0.231 0.769 41 H 0.245 0.755 42 H 0.143 0.857 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.157 0.843 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.091 -26.625 6.229 27.344 hybrid contribution -0.395 1.073 -0.490 1.244 sum -0.486 -25.553 5.739 26.194 Atomic orbital electron populations 1.69835 1.06738 1.26034 1.59631 1.25625 0.96436 1.01294 1.03684 0.85040 0.78282 0.79544 0.76704 1.18840 1.22015 1.21905 1.19710 0.91575 0.85386 1.41084 0.90498 1.42641 1.05622 1.01518 1.89460 1.20819 0.94123 0.84696 0.97840 1.21573 0.98018 0.93712 1.01588 1.21703 0.97000 0.90607 1.04769 1.19889 0.92289 0.92346 0.86794 0.89722 1.45857 1.16296 1.57189 1.14471 1.18058 0.81693 0.78321 0.86596 1.90771 1.70055 1.46326 1.35776 1.21594 0.93872 0.95146 0.92918 1.23202 0.94656 0.99415 1.02269 1.23997 1.00474 0.90200 0.86183 1.68478 1.11962 1.09524 1.33265 1.25600 0.87096 0.91871 0.95218 1.68346 1.37872 1.16241 0.99987 1.20150 0.99112 0.96536 0.94612 1.21216 0.99448 0.96055 0.97173 1.21412 0.97526 0.95552 0.99903 1.21489 0.99528 1.00669 0.92666 1.21420 0.99181 0.95366 0.98664 1.21092 0.97571 0.96557 0.98221 0.94011 0.79701 0.95758 0.96073 0.92916 0.92455 0.89620 0.89000 0.74449 0.81369 0.76861 0.75531 0.85665 0.84142 0.83886 0.84269 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.75 13.06 21.65 0.28 -60.47 16 2 C -0.08 -4.59 5.50 84.87 0.47 -4.13 16 3 Si 0.98 46.68 29.55 68.60 2.03 48.71 16 4 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 7 C -0.25 -14.03 9.99 84.04 0.84 -13.19 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 9 N -0.75 -39.27 5.60 -343.47 -1.92 -41.19 16 10 C 0.15 6.03 6.26 86.38 0.54 6.57 16 11 C -0.11 -3.50 5.21 30.59 0.16 -3.34 16 12 C -0.10 -2.40 4.73 30.59 0.14 -2.26 16 13 C 0.19 4.49 2.17 44.25 0.10 4.59 16 14 H 0.08 2.28 7.44 -2.39 -0.02 2.26 16 15 N -0.69 -16.14 3.76 -448.39 -1.69 -17.82 16 16 C 0.57 15.01 7.79 86.97 0.68 15.69 16 17 O -0.55 -17.33 16.09 -3.64 -0.06 -17.39 16 18 C 0.11 2.56 6.79 41.99 0.29 2.84 16 19 C -0.17 -3.12 9.72 22.71 0.22 -2.90 16 20 C 0.16 2.25 11.31 84.76 0.96 3.21 16 21 N -0.52 -9.10 10.42 -200.09 -2.09 -11.18 16 22 C 0.29 5.15 12.27 180.92 2.22 7.37 16 23 N -0.51 -10.88 9.70 -189.15 -1.84 -12.72 16 24 C -0.10 -2.28 4.91 -19.87 -0.10 -2.38 16 25 C -0.12 -2.56 9.67 22.27 0.22 -2.34 16 26 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 27 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 28 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 29 C -0.12 -2.34 9.32 22.27 0.21 -2.13 16 30 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 31 H 0.37 20.82 7.67 -92.71 -0.71 20.11 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.06 1.88 7.75 -2.38 -0.02 1.86 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.42 8.99 7.99 -92.71 -0.74 8.25 16 39 H 0.17 2.68 7.74 -2.91 -0.02 2.66 16 40 H 0.21 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.23 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.13 2.49 8.04 -2.91 -0.02 2.47 16 43 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 44 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 45 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.12 2.26 7.72 -2.91 -0.02 2.24 16 Total: -1.00 -75.20 396.78 1.88 -73.32 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -0.44 Total: 37.00 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 7.61 Total: 1.74 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -7.25 Total: -143.38 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.06 Total: -17.39 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -75.20 1.88 -73.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700709023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.661 kcal (2) G-P(sol) polarization free energy of solvation -75.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds