Wall clock time and date at job start Sat Apr 11 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99622 * 2 1 4 4 H 1.48497 * 109.46556 * 269.99881 * 3 2 1 5 5 H 1.48493 * 109.47265 * 30.00241 * 3 2 1 6 6 H 1.48504 * 109.46810 * 150.00524 * 3 2 1 7 7 C 1.38803 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00210 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00121 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00487 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47216 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46830 * 299.99942 * 10 9 7 13 13 C 1.52994 * 109.47205 * 294.99815 * 12 10 9 14 14 N 1.46506 * 109.47165 * 179.97438 * 13 12 10 15 15 C 1.34770 * 119.99983 * 179.97438 * 14 13 12 16 16 O 1.21515 * 120.00408 * 0.02562 * 15 14 13 17 17 C 1.48140 * 120.00200 * 180.02562 * 15 14 13 18 18 C 1.40110 * 121.14772 * 179.72397 * 17 15 14 19 19 C 1.38499 * 117.82265 * 179.74034 * 18 17 15 20 20 N 1.31921 * 119.96774 * 0.53870 * 19 18 17 21 21 N 1.28273 * 122.51811 * 359.72047 * 20 19 18 22 22 C 1.31927 * 122.32406 * 359.97438 * 21 20 19 23 23 C 1.53001 * 109.47048 * 59.99537 * 10 9 7 24 24 C 1.50706 * 109.46607 * 65.00300 * 23 10 9 25 25 C 1.38238 * 119.99744 * 90.00198 * 24 23 10 26 26 C 1.38234 * 119.99693 * 179.97438 * 25 24 23 27 27 C 1.38234 * 120.00240 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00037 * 0.26327 * 27 26 25 29 29 C 1.38234 * 120.00173 * 269.97579 * 24 23 10 30 30 H 0.96998 * 120.00164 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00153 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47060 * 55.00075 * 12 10 9 33 33 H 1.09003 * 109.47051 * 174.99583 * 12 10 9 34 34 H 1.08990 * 109.47251 * 299.99789 * 13 12 10 35 35 H 1.09001 * 109.47543 * 60.00397 * 13 12 10 36 36 H 0.96996 * 119.99724 * 0.02562 * 14 13 12 37 37 H 1.07993 * 121.08704 * 359.97438 * 18 17 15 38 38 H 1.08003 * 120.01968 * 180.26190 * 19 18 17 39 39 H 1.08003 * 120.17138 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.47212 * 305.01002 * 23 10 9 41 41 H 1.08995 * 109.47163 * 185.00413 * 23 10 9 42 42 H 1.07997 * 119.99846 * 359.97438 * 25 24 23 43 43 H 1.07999 * 119.99751 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 46 46 H 1.07999 * 120.00025 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1123 -2.4708 0.0000 11 1 5.1839 -2.2716 -0.0009 12 6 3.7431 -3.2728 1.2496 13 6 4.2255 -2.5269 2.4953 14 7 3.8715 -3.2945 3.6918 15 6 4.1992 -2.8281 4.9131 16 8 4.7878 -1.7706 5.0218 17 6 3.8418 -3.6045 6.1230 18 6 4.1756 -3.1451 7.4038 19 6 3.8031 -3.9233 8.4872 20 7 3.1651 -5.0614 8.2927 21 7 2.8612 -5.4903 7.1226 22 6 3.1646 -4.8229 6.0258 23 6 3.7421 -3.2735 -1.2489 24 6 4.2163 -2.5392 -2.4766 25 6 5.4814 -2.7789 -2.9797 26 6 5.9161 -2.1059 -4.1061 27 6 5.0857 -1.1935 -4.7297 28 6 3.8225 -0.9502 -4.2238 29 6 3.3861 -1.6265 -3.0999 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3621 -0.0004 32 1 2.6610 -3.3957 1.2959 33 1 4.2185 -4.2527 1.2060 34 1 5.3075 -2.4040 2.4490 35 1 3.7501 -1.5470 2.5390 36 1 3.4020 -4.1388 3.6050 37 1 4.7028 -2.2127 7.5419 38 1 4.0388 -3.6008 9.4907 39 1 2.8914 -5.2165 5.0579 40 1 2.6600 -3.3963 -1.2944 41 1 4.2175 -4.2533 -1.2052 42 1 6.1300 -3.4920 -2.4927 43 1 6.9046 -2.2928 -4.4989 44 1 5.4256 -0.6674 -5.6096 45 1 3.1753 -0.2342 -4.7084 46 1 2.3977 -1.4393 -2.7068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700887678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:05 Heat of formation + Delta-G solvation = 58.124574 kcal Electronic energy + Delta-G solvation = -28306.851635 eV Core-core repulsion = 24390.178424 eV Total energy + Delta-G solvation = -3916.673212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.44774 -39.51426 -38.94200 -36.82066 -34.80762 -33.53701 -32.94140 -32.50244 -31.19591 -30.42786 -29.80930 -27.49582 -25.70965 -24.85242 -24.00826 -22.93256 -22.08913 -21.10619 -20.85214 -19.46723 -18.42497 -17.92887 -17.84600 -16.66707 -16.29754 -15.77758 -15.69964 -15.34184 -15.25805 -14.81391 -14.72488 -14.32316 -14.27374 -13.86618 -13.73105 -13.29654 -13.12408 -12.96442 -12.90881 -12.56476 -11.83886 -11.72724 -11.67938 -11.33285 -11.16143 -10.99548 -10.96715 -10.67474 -10.54989 -10.52553 -10.45958 -10.43122 -10.29958 -10.03898 -9.87499 -9.54570 -9.08104 -8.99773 -8.47555 -8.20426 -7.34032 -5.84457 -3.20078 0.03059 0.51401 1.79031 1.87293 2.59139 2.90511 3.34786 3.36563 3.39034 3.44177 3.71529 3.98715 4.19002 4.23644 4.35512 4.51794 4.54124 4.91712 5.11280 5.16014 5.24215 5.27655 5.33969 5.39811 5.44961 5.47656 5.56891 5.60751 5.73353 5.80699 5.86940 5.92233 6.00428 6.07414 6.19288 6.25888 6.32733 6.45105 6.53462 6.58323 6.62666 6.80327 6.85866 7.02174 7.25032 7.34427 7.51081 7.89131 7.99322 8.28640 8.34168 9.12560 9.86275 10.05375 11.33047 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.002683 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.535188 B =10433.683864 C =11630.092412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.012 3.988 3 Si 0.875 3.125 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.239 4.239 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.193 3.807 11 H 0.057 0.943 12 C -0.141 4.141 13 C 0.125 3.875 14 N -0.711 5.711 15 C 0.556 3.444 16 O -0.526 6.526 17 C -0.126 4.126 18 C -0.060 4.060 19 C 0.038 3.962 20 N -0.231 5.231 21 N -0.242 5.242 22 C 0.070 3.930 23 C -0.093 4.093 24 C -0.058 4.058 25 C -0.129 4.129 26 C -0.132 4.132 27 C -0.136 4.136 28 C -0.127 4.127 29 C -0.087 4.087 30 H 0.259 0.741 31 H 0.363 0.637 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.399 0.601 37 H 0.164 0.836 38 H 0.180 0.820 39 H 0.176 0.824 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.113 0.887 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.009 -9.021 4.773 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.185 4.185 3 Si 0.705 3.295 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.369 4.369 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.082 3.918 11 H 0.075 0.925 12 C -0.181 4.181 13 C 0.003 3.997 14 N -0.362 5.362 15 C 0.340 3.660 16 O -0.402 6.402 17 C -0.141 4.141 18 C -0.090 4.090 19 C -0.126 4.126 20 N -0.074 5.074 21 N -0.083 5.083 22 C -0.095 4.095 23 C -0.133 4.133 24 C -0.058 4.058 25 C -0.147 4.147 26 C -0.150 4.150 27 C -0.154 4.154 28 C -0.145 4.145 29 C -0.105 4.105 30 H 0.069 0.931 31 H 0.196 0.804 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.233 0.767 37 H 0.181 0.819 38 H 0.197 0.803 39 H 0.193 0.807 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.476 -9.643 5.484 15.258 hybrid contribution 0.940 2.332 -0.761 2.628 sum 11.416 -7.311 4.722 14.355 Atomic orbital electron populations 1.69688 1.05089 1.25825 1.57202 1.24598 0.95027 0.96932 1.01905 0.86700 0.79407 0.85512 0.77834 1.21064 1.22047 1.20254 1.18877 0.80538 0.94335 1.43123 0.89032 1.42776 1.04146 1.01800 1.89698 1.20003 0.94554 0.86820 0.90446 0.92466 1.22274 1.03054 0.97917 0.94892 1.21486 0.99721 0.96578 0.81903 1.46000 1.58753 1.25413 1.06012 1.17872 0.80009 0.85214 0.82893 1.90812 1.40901 1.22096 1.86398 1.21367 1.00129 0.96683 0.95903 1.22665 0.94493 1.00526 0.91333 1.24409 0.95162 0.92048 1.00996 1.72898 1.07191 1.11813 1.15456 1.73079 1.14110 1.26777 0.94344 1.24584 0.93013 0.91323 1.00576 1.21123 1.02515 0.96666 0.92986 1.19828 0.93423 0.96714 0.95863 1.20992 0.96047 1.00749 0.96956 1.20951 0.99210 0.98020 0.96844 1.21005 0.94841 0.99309 1.00271 1.21193 0.96126 0.99957 0.97194 1.21412 1.01155 0.94235 0.93682 0.93094 0.80432 0.90075 0.92585 0.92103 0.89419 0.76661 0.81879 0.80257 0.80691 0.90033 0.92387 0.86906 0.87100 0.87150 0.86797 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.25 13.97 55.49 0.78 -26.47 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.22 16 3 Si 0.87 21.21 27.74 -169.99 -4.71 16.49 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.42 6.52 56.52 0.37 -6.06 16 7 C -0.24 -5.74 8.36 -15.06 -0.13 -5.87 16 8 H 0.09 2.36 6.87 -52.48 -0.36 2.00 16 9 N -0.74 -14.94 3.94 -53.42 -0.21 -15.15 16 10 C 0.19 3.04 2.67 -67.93 -0.18 2.86 16 11 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 12 C -0.14 -1.94 4.73 -26.73 -0.13 -2.07 16 13 C 0.13 1.83 5.56 -4.04 -0.02 1.80 16 14 N -0.71 -8.70 5.52 -61.16 -0.34 -9.03 16 15 C 0.56 7.54 7.80 -12.20 -0.10 7.44 16 16 O -0.53 -9.05 16.49 5.35 0.09 -8.96 16 17 C -0.13 -1.39 5.92 -104.57 -0.62 -2.01 16 18 C -0.06 -0.57 9.77 -38.78 -0.38 -0.95 16 19 C 0.04 0.33 11.30 -17.42 -0.20 0.13 16 20 N -0.23 -2.67 11.48 30.53 0.35 -2.32 16 21 N -0.24 -2.90 11.49 30.78 0.35 -2.54 16 22 C 0.07 0.70 10.84 -16.95 -0.18 0.52 16 23 C -0.09 -1.42 4.75 -27.88 -0.13 -1.55 16 24 C -0.06 -0.94 4.95 -104.62 -0.52 -1.45 16 25 C -0.13 -1.84 9.70 -39.58 -0.38 -2.22 16 26 C -0.13 -1.80 10.05 -39.58 -0.40 -2.20 16 27 C -0.14 -1.95 10.05 -39.58 -0.40 -2.34 16 28 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 29 C -0.09 -1.55 9.31 -39.58 -0.37 -1.92 16 30 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.36 7.71 5.89 -40.82 -0.24 7.47 16 32 H 0.08 1.27 7.11 -51.93 -0.37 0.90 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.62 7.75 -51.93 -0.40 1.22 16 36 H 0.40 3.64 6.63 -40.82 -0.27 3.37 16 37 H 0.16 1.35 7.80 -52.49 -0.41 0.94 16 38 H 0.18 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.18 1.22 6.53 -52.48 -0.34 0.88 16 40 H 0.08 1.40 7.05 -51.93 -0.37 1.04 16 41 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 42 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 43 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 46 H 0.14 2.82 7.37 -52.49 -0.39 2.43 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -32.20 386.78 -8.61 -40.81 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -6.12 Total: 13.41 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -4.62 Total: -12.06 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.93 Total: -55.51 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.71 Total: 16.49 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.20 -8.61 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700887678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.930 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds