Wall clock time and date at job start Sat Apr 11 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99622 * 2 1 4 4 H 1.48497 * 109.46556 * 269.99881 * 3 2 1 5 5 H 1.48493 * 109.47265 * 30.00241 * 3 2 1 6 6 H 1.48504 * 109.46810 * 150.00524 * 3 2 1 7 7 C 1.38803 * 120.00028 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00210 * 359.97438 * 7 2 1 9 9 N 1.36936 * 120.00121 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00487 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47216 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46830 * 299.99942 * 10 9 7 13 13 C 1.52994 * 109.47205 * 294.99815 * 12 10 9 14 14 N 1.46506 * 109.47165 * 179.97438 * 13 12 10 15 15 C 1.34770 * 119.99983 * 179.97438 * 14 13 12 16 16 O 1.21515 * 120.00408 * 0.02562 * 15 14 13 17 17 C 1.48140 * 120.00200 * 180.02562 * 15 14 13 18 18 C 1.40110 * 121.14772 * 179.72397 * 17 15 14 19 19 C 1.38499 * 117.82265 * 179.74034 * 18 17 15 20 20 N 1.31921 * 119.96774 * 0.53870 * 19 18 17 21 21 N 1.28273 * 122.51811 * 359.72047 * 20 19 18 22 22 C 1.31927 * 122.32406 * 359.97438 * 21 20 19 23 23 C 1.53001 * 109.47048 * 59.99537 * 10 9 7 24 24 C 1.50706 * 109.46607 * 65.00300 * 23 10 9 25 25 C 1.38238 * 119.99744 * 90.00198 * 24 23 10 26 26 C 1.38234 * 119.99693 * 179.97438 * 25 24 23 27 27 C 1.38234 * 120.00240 * 359.97438 * 26 25 24 28 28 C 1.38233 * 120.00037 * 0.26327 * 27 26 25 29 29 C 1.38234 * 120.00173 * 269.97579 * 24 23 10 30 30 H 0.96998 * 120.00164 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00153 * 0.02562 * 9 7 2 32 32 H 1.09006 * 109.47060 * 55.00075 * 12 10 9 33 33 H 1.09003 * 109.47051 * 174.99583 * 12 10 9 34 34 H 1.08990 * 109.47251 * 299.99789 * 13 12 10 35 35 H 1.09001 * 109.47543 * 60.00397 * 13 12 10 36 36 H 0.96996 * 119.99724 * 0.02562 * 14 13 12 37 37 H 1.07993 * 121.08704 * 359.97438 * 18 17 15 38 38 H 1.08003 * 120.01968 * 180.26190 * 19 18 17 39 39 H 1.08003 * 120.17138 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.47212 * 305.01002 * 23 10 9 41 41 H 1.08995 * 109.47163 * 185.00413 * 23 10 9 42 42 H 1.07997 * 119.99846 * 359.97438 * 25 24 23 43 43 H 1.07999 * 119.99751 * 179.97438 * 26 25 24 44 44 H 1.08002 * 119.99744 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 46 46 H 1.07999 * 120.00025 * 0.02562 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 7 3.3796 -1.2021 0.0000 10 6 4.1123 -2.4708 0.0000 11 1 5.1839 -2.2716 -0.0009 12 6 3.7431 -3.2728 1.2496 13 6 4.2255 -2.5269 2.4953 14 7 3.8715 -3.2945 3.6918 15 6 4.1992 -2.8281 4.9131 16 8 4.7878 -1.7706 5.0218 17 6 3.8418 -3.6045 6.1230 18 6 4.1756 -3.1451 7.4038 19 6 3.8031 -3.9233 8.4872 20 7 3.1651 -5.0614 8.2927 21 7 2.8612 -5.4903 7.1226 22 6 3.1646 -4.8229 6.0258 23 6 3.7421 -3.2735 -1.2489 24 6 4.2163 -2.5392 -2.4766 25 6 5.4814 -2.7789 -2.9797 26 6 5.9161 -2.1059 -4.1061 27 6 5.0857 -1.1935 -4.7297 28 6 3.8225 -0.9502 -4.2238 29 6 3.3861 -1.6265 -3.0999 30 1 -0.4850 0.8400 0.0004 31 1 3.8647 -0.3621 -0.0004 32 1 2.6610 -3.3957 1.2959 33 1 4.2185 -4.2527 1.2060 34 1 5.3075 -2.4040 2.4490 35 1 3.7501 -1.5470 2.5390 36 1 3.4020 -4.1388 3.6050 37 1 4.7028 -2.2127 7.5419 38 1 4.0388 -3.6008 9.4907 39 1 2.8914 -5.2165 5.0579 40 1 2.6600 -3.3963 -1.2944 41 1 4.2175 -4.2533 -1.2052 42 1 6.1300 -3.4920 -2.4927 43 1 6.9046 -2.2928 -4.4989 44 1 5.4256 -0.6674 -5.6096 45 1 3.1753 -0.2342 -4.7084 46 1 2.3977 -1.4393 -2.7068 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700887678.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:04 Heat of formation + Delta-G solvation = 36.829071 kcal Electronic energy + Delta-G solvation = -28307.775078 eV Core-core repulsion = 24390.178424 eV Total energy + Delta-G solvation = -3917.596654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.27588 -40.59325 -40.13655 -38.17614 -36.04177 -34.46872 -34.22054 -33.69977 -32.57272 -31.61709 -31.30531 -28.72934 -26.64859 -25.76147 -25.59373 -24.16253 -23.27141 -22.17365 -22.02170 -20.89782 -19.85876 -19.20971 -18.73617 -17.48741 -17.38540 -16.99978 -16.80343 -16.49709 -16.34147 -16.15035 -15.84419 -15.81820 -15.54101 -14.89456 -14.79871 -14.61250 -14.49314 -14.29258 -14.12957 -13.92838 -13.40292 -13.07390 -12.96111 -12.87227 -12.51837 -12.32512 -12.08967 -11.94594 -11.82312 -11.76739 -11.72399 -11.57163 -11.38081 -11.26935 -11.24790 -10.91601 -10.76576 -10.18017 -9.67261 -9.47507 -9.11879 -7.93030 -5.21451 -0.80808 -0.20906 0.62246 0.68222 1.37529 1.39032 1.43911 1.60576 1.90370 2.53156 2.53578 3.00432 3.04904 3.18978 3.41544 3.47447 3.48851 3.67110 3.78095 3.96317 4.14290 4.19201 4.29099 4.32072 4.35079 4.43627 4.54416 4.59384 4.63804 4.71968 4.76950 4.80802 4.85791 4.94118 5.04986 5.07504 5.16245 5.23259 5.35609 5.38528 5.43178 5.53499 5.71746 5.79630 5.89349 6.03873 6.31021 6.32344 6.34846 6.98408 7.18865 7.50911 7.97116 8.12352 9.28504 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.002683 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.535188 B =10433.683864 C =11630.092412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.058 4.058 3 Si 0.925 3.075 4 H -0.288 1.288 5 H -0.311 1.311 6 H -0.259 1.259 7 C -0.181 4.181 8 H 0.072 0.928 9 N -0.745 5.745 10 C 0.185 3.815 11 H 0.081 0.919 12 C -0.129 4.129 13 C 0.133 3.867 14 N -0.701 5.701 15 C 0.557 3.443 16 O -0.568 6.568 17 C -0.140 4.140 18 C -0.055 4.055 19 C 0.049 3.951 20 N -0.256 5.256 21 N -0.269 5.269 22 C 0.077 3.923 23 C -0.086 4.086 24 C -0.071 4.071 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.136 4.136 28 C -0.145 4.145 29 C -0.117 4.117 30 H 0.249 0.751 31 H 0.359 0.641 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.415 0.585 37 H 0.175 0.825 38 H 0.219 0.781 39 H 0.201 0.799 40 H 0.051 0.949 41 H 0.096 0.904 42 H 0.146 0.854 43 H 0.146 0.854 44 H 0.136 0.864 45 H 0.112 0.888 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.711 -10.928 4.924 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.248 4.248 3 Si 0.757 3.243 4 H -0.215 1.215 5 H -0.239 1.239 6 H -0.184 1.184 7 C -0.313 4.313 8 H 0.090 0.910 9 N -0.386 5.386 10 C 0.076 3.924 11 H 0.099 0.901 12 C -0.169 4.169 13 C 0.009 3.991 14 N -0.352 5.352 15 C 0.343 3.657 16 O -0.447 6.447 17 C -0.154 4.154 18 C -0.086 4.086 19 C -0.115 4.115 20 N -0.098 5.098 21 N -0.109 5.109 22 C -0.089 4.089 23 C -0.125 4.125 24 C -0.071 4.071 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.154 4.154 28 C -0.163 4.163 29 C -0.135 4.135 30 H 0.058 0.942 31 H 0.191 0.809 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.253 0.747 37 H 0.192 0.808 38 H 0.236 0.764 39 H 0.218 0.782 40 H 0.069 0.931 41 H 0.115 0.885 42 H 0.164 0.836 43 H 0.164 0.836 44 H 0.154 0.846 45 H 0.130 0.870 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.225 -11.635 5.635 19.221 hybrid contribution -0.089 2.808 -0.840 2.932 sum 14.135 -8.827 4.795 17.341 Atomic orbital electron populations 1.69828 1.06692 1.25584 1.61594 1.25113 0.95480 0.99669 1.04586 0.85841 0.78813 0.82361 0.77327 1.21533 1.23928 1.18376 1.18793 0.82239 0.92827 1.37407 0.91037 1.42843 1.02680 1.03718 1.89379 1.20368 0.95250 0.85127 0.91609 0.90125 1.22138 1.01976 0.99517 0.93233 1.21250 0.99750 0.94979 0.83073 1.45849 1.58430 1.25750 1.05201 1.18199 0.79091 0.84737 0.83680 1.90789 1.42951 1.23969 1.87029 1.21221 1.01632 0.97184 0.95398 1.22937 0.93691 1.00844 0.91082 1.24953 0.93475 0.90642 1.02442 1.72816 1.08132 1.13182 1.15629 1.73035 1.15233 1.27741 0.94867 1.24887 0.92075 0.90677 1.01234 1.21040 1.00945 0.98286 0.92215 1.19947 0.94335 0.96596 0.96259 1.21326 0.95177 1.00838 0.96930 1.21408 1.00376 0.96603 0.96101 1.21323 0.93778 0.99405 1.00917 1.21309 0.97533 1.00302 0.97161 1.21197 1.00115 0.96707 0.95469 0.94160 0.80886 0.92282 0.88125 0.91220 0.93815 0.74734 0.80755 0.76415 0.78210 0.93072 0.88540 0.83650 0.83582 0.84576 0.87021 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.98 13.97 21.65 0.30 -60.68 16 2 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 3 Si 0.93 45.58 27.74 68.60 1.90 47.48 16 4 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.31 -16.12 7.11 99.48 0.71 -15.41 16 6 H -0.26 -11.76 6.52 99.48 0.65 -11.11 16 7 C -0.18 -9.01 8.36 84.03 0.70 -8.31 16 8 H 0.07 3.85 6.87 -2.91 -0.02 3.83 16 9 N -0.75 -29.92 3.94 -322.93 -1.27 -31.19 16 10 C 0.19 5.46 2.67 44.99 0.12 5.58 16 11 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 12 C -0.13 -3.24 4.73 30.59 0.14 -3.10 16 13 C 0.13 3.67 5.56 86.38 0.48 4.15 16 14 N -0.70 -16.03 5.52 -465.71 -2.57 -18.60 16 15 C 0.56 14.53 7.80 86.87 0.68 15.21 16 16 O -0.57 -19.35 16.49 -3.76 -0.06 -19.41 16 17 C -0.14 -2.88 5.92 -19.83 -0.12 -3.00 16 18 C -0.06 -0.96 9.77 22.79 0.22 -0.73 16 19 C 0.05 0.74 11.30 84.74 0.96 1.70 16 20 N -0.26 -5.52 11.48 -57.33 -0.66 -6.18 16 21 N -0.27 -6.08 11.49 -56.53 -0.65 -6.73 16 22 C 0.08 1.42 10.84 85.04 0.92 2.34 16 23 C -0.09 -2.43 4.75 29.85 0.14 -2.29 16 24 C -0.07 -2.17 4.95 -19.86 -0.10 -2.27 16 25 C -0.12 -3.03 9.70 22.27 0.22 -2.82 16 26 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 27 C -0.14 -3.54 10.05 22.27 0.22 -3.32 16 28 C -0.14 -4.69 10.05 22.27 0.22 -4.47 16 29 C -0.12 -4.25 9.31 22.27 0.21 -4.04 16 30 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 31 H 0.36 15.08 5.89 -92.71 -0.55 14.53 16 32 H 0.06 1.78 7.11 -2.38 -0.02 1.77 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.04 1.62 7.75 -2.39 -0.02 1.60 16 36 H 0.41 6.63 6.63 -92.71 -0.61 6.01 16 37 H 0.18 2.58 7.80 -2.91 -0.02 2.56 16 38 H 0.22 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.20 2.35 6.53 -2.91 -0.02 2.34 16 40 H 0.05 1.76 7.05 -2.39 -0.02 1.75 16 41 H 0.10 2.01 8.09 -2.39 -0.02 1.99 16 42 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 44 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 45 H 0.11 3.49 8.06 -2.91 -0.02 3.47 16 46 H 0.10 4.22 7.37 -2.91 -0.02 4.20 16 Total: -1.00 -75.63 386.78 2.51 -73.12 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.20 Total: 33.00 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 5.72 Total: -10.82 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -4.85 Total: -123.37 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.06 Total: -19.41 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.90 Total: 47.48 kcal Total: -75.63 2.51 -73.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700887678.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.950 kcal (2) G-P(sol) polarization free energy of solvation -75.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds