Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48496 * 109.47520 * 240.00228 * 3 2 1 5 5 H 1.48503 * 109.46939 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46877 * 120.00499 * 3 2 1 7 7 C 1.38809 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99978 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.64745 * 0.04410 * 9 7 2 11 11 C 1.54910 * 104.83032 * 204.09127 * 10 9 7 12 12 C 1.55154 * 101.58362 * 322.99273 * 11 10 9 13 13 H 1.08998 * 110.87654 * 277.06841 * 12 11 10 14 14 C 1.53003 * 110.72028 * 153.86365 * 12 11 10 15 15 C 1.52999 * 109.47358 * 180.02562 * 14 12 11 16 16 N 1.46492 * 109.47549 * 180.02562 * 15 14 12 17 17 C 1.34779 * 120.00511 * 179.97438 * 16 15 14 18 18 O 1.21508 * 119.99475 * 0.02562 * 17 16 15 19 19 C 1.48232 * 120.00175 * 179.97438 * 17 16 15 20 20 C 1.40571 * 119.74311 * 180.02562 * 19 17 16 21 21 N 1.31264 * 120.56631 * 180.02562 * 20 19 17 22 22 C 1.33776 * 119.80699 * 359.97438 * 21 20 19 23 23 C 1.40545 * 120.99597 * 179.97438 * 22 21 20 24 24 C 1.36075 * 119.75628 * 180.02562 * 23 22 21 25 25 C 1.39472 * 121.01026 * 0.02562 * 24 23 22 26 26 C 1.35989 * 120.98945 * 359.97438 * 25 24 23 27 27 C 1.40813 * 119.69900 * 0.02562 * 26 25 24 28 28 N 1.32169 * 119.74669 * 0.02562 * 19 17 16 29 29 C 1.47027 * 125.64924 * 180.02562 * 9 7 2 30 30 H 0.97003 * 120.00169 * 359.97438 * 1 2 3 31 31 H 1.08995 * 110.36990 * 322.93091 * 10 9 7 32 32 H 1.08996 * 110.36457 * 85.14752 * 10 9 7 33 33 H 1.08998 * 111.00148 * 204.91963 * 11 10 9 34 34 H 1.09002 * 111.00470 * 81.07085 * 11 10 9 35 35 H 1.09003 * 109.46631 * 60.02511 * 14 12 11 36 36 H 1.08997 * 109.47018 * 300.02456 * 14 12 11 37 37 H 1.08998 * 109.47047 * 59.99706 * 15 14 12 38 38 H 1.09001 * 109.46863 * 300.00467 * 15 14 12 39 39 H 0.97002 * 119.99884 * 0.02562 * 16 15 14 40 40 H 1.07998 * 119.72140 * 0.04626 * 20 19 17 41 41 H 1.07999 * 120.12005 * 0.04522 * 23 22 21 42 42 H 1.08002 * 119.49288 * 180.02562 * 24 23 22 43 43 H 1.08007 * 119.50415 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.15329 * 180.02562 * 26 25 24 45 45 H 1.09001 * 109.87893 * 59.55650 * 29 9 7 46 46 H 1.08995 * 110.00527 * 298.46689 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1415 -2.5331 -0.0009 11 6 -0.4017 -3.9325 0.6105 12 6 0.7785 -4.7524 0.0255 13 1 0.5484 -5.1001 -0.9816 14 6 1.1231 -5.9315 0.9376 15 6 2.2885 -6.7187 0.3352 16 7 2.6181 -7.8481 1.2082 17 6 3.6196 -8.6867 0.8762 18 8 4.2494 -8.5057 -0.1470 19 6 3.9534 -9.8291 1.7598 20 6 4.9993 -10.7001 1.4086 21 7 5.3082 -11.7171 2.1789 22 6 4.6234 -11.9278 3.3086 23 6 4.9326 -13.0091 4.1515 24 6 4.2191 -13.2000 5.2943 25 6 3.1808 -12.3377 5.6457 26 6 2.8513 -11.2803 4.8566 27 6 3.5662 -11.0492 3.6656 28 7 3.2653 -10.0209 2.8719 29 6 1.9319 -3.7275 -0.0005 30 1 -0.4850 0.8401 0.0004 31 1 -0.5995 -1.7591 0.6147 32 1 -0.5272 -2.4846 -1.0192 33 1 -1.3589 -4.3329 0.2766 34 1 -0.3524 -3.8986 1.6989 35 1 0.2546 -6.5835 1.0322 36 1 1.4066 -5.5588 1.9218 37 1 3.1569 -6.0668 0.2405 38 1 2.0050 -7.0914 -0.6491 39 1 2.1150 -7.9927 2.0248 40 1 5.5537 -10.5310 0.4973 41 1 5.7337 -13.6857 3.8932 42 1 4.4606 -14.0320 5.9392 43 1 2.6301 -12.5123 6.5583 44 1 2.0450 -10.6209 5.1419 45 1 2.5579 -3.8510 0.8832 46 1 2.5304 -3.8659 -0.9009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713731121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = 55.738446 kcal Electronic energy + Delta-G solvation = -27588.379299 eV Core-core repulsion = 23671.602617 eV Total energy + Delta-G solvation = -3916.776682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.99100 -39.82165 -37.97431 -37.65289 -35.57632 -35.16032 -33.04352 -31.62707 -31.17224 -30.64459 -28.98117 -26.95486 -26.05334 -25.10773 -24.43487 -22.78822 -22.42358 -21.38206 -20.07469 -19.59330 -18.97221 -18.81691 -17.88341 -16.86813 -16.26794 -16.09036 -16.01837 -15.50093 -15.35505 -14.89802 -14.84185 -14.57230 -14.38844 -14.01769 -13.65834 -13.60365 -12.52232 -12.50052 -12.43196 -12.33747 -12.28069 -12.23168 -12.20623 -11.90817 -11.70015 -11.56902 -11.05594 -10.89505 -10.72567 -10.67703 -10.14865 -10.02203 -9.91961 -9.73795 -9.60558 -9.54130 -9.42839 -9.20974 -9.12125 -8.60751 -6.78222 -5.61230 -3.02481 -0.49876 -0.09102 1.31249 1.97232 2.72282 2.77134 3.39064 3.43181 3.47083 3.48561 3.54130 3.57473 3.72408 4.21791 4.30069 4.48070 4.52778 4.57258 4.68454 4.86198 4.93624 5.10410 5.27721 5.30539 5.31581 5.50811 5.50888 5.60711 5.62355 5.64642 5.76117 5.77324 5.88192 6.03016 6.08294 6.14960 6.23286 6.32875 6.41346 6.61226 6.63600 6.66653 6.80061 7.00952 7.06376 7.31254 7.56620 7.67202 7.88933 7.89944 8.41030 9.26766 9.87923 10.53371 11.42605 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020891 B = 0.001781 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.989394 B =15713.912257 C =15986.424507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.013 4.013 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.138 4.138 12 C -0.097 4.097 13 H 0.073 0.927 14 C -0.117 4.117 15 C 0.114 3.886 16 N -0.703 5.703 17 C 0.570 3.430 18 O -0.523 6.523 19 C 0.063 3.937 20 C 0.129 3.871 21 N -0.425 5.425 22 C 0.093 3.907 23 C -0.089 4.089 24 C -0.088 4.088 25 C -0.102 4.102 26 C -0.074 4.074 27 C 0.076 3.924 28 N -0.393 5.393 29 C 0.139 3.861 30 H 0.252 0.748 31 H 0.105 0.895 32 H 0.011 0.989 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.410 0.590 40 H 0.189 0.811 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.022 0.978 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.478 -28.930 11.260 31.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.208 4.208 3 Si 0.745 3.255 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.177 4.177 12 C -0.117 4.117 13 H 0.091 0.909 14 C -0.155 4.155 15 C -0.008 4.008 16 N -0.354 5.354 17 C 0.353 3.647 18 O -0.398 6.398 19 C -0.094 4.094 20 C -0.046 4.046 21 N -0.138 5.138 22 C -0.032 4.032 23 C -0.108 4.108 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.094 4.094 27 C -0.050 4.050 28 N -0.111 5.111 29 C 0.013 3.987 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.029 0.971 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.246 0.754 40 H 0.206 0.794 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.162 0.838 45 H 0.040 0.960 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.858 -28.622 10.641 30.920 hybrid contribution 0.247 0.776 0.298 0.867 sum 5.105 -27.846 10.939 30.350 Atomic orbital electron populations 1.69794 1.04864 1.24778 1.57808 1.24785 0.95739 0.97696 1.02621 0.86153 0.78387 0.83086 0.77888 1.21236 1.21594 1.21211 1.19047 0.90486 0.82572 1.42830 0.90602 1.44510 1.02002 0.99797 1.86798 1.21922 0.84695 0.92642 0.98142 1.23038 0.95857 0.98832 0.99974 1.22095 0.97579 0.93711 0.98298 0.90881 1.21797 0.96721 0.96940 1.00022 1.21649 0.99132 0.86535 0.93498 1.45941 1.34346 1.28175 1.26957 1.17615 0.80992 0.81428 0.84668 1.90836 1.51255 1.72902 1.24842 1.22525 0.95529 0.97677 0.93623 1.24022 0.93274 0.88364 0.98984 1.68849 1.24809 1.17356 1.02827 1.19827 0.93580 0.96282 0.93532 1.20847 1.00424 0.96068 0.93483 1.21133 0.94499 0.99094 0.96128 1.21077 0.97063 0.94097 0.99935 1.20928 0.99007 0.97882 0.91553 1.19600 0.96310 0.92810 0.96321 1.68496 1.24126 1.16446 1.02071 1.21368 0.93685 0.85932 0.97704 0.93760 0.87714 0.97130 0.92487 0.92182 0.91509 0.91050 0.90392 0.90962 0.75444 0.79409 0.83954 0.84377 0.84306 0.83766 0.95985 0.96223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 10.09 55.49 0.56 -26.68 16 2 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.22 -6.28 10.27 -15.06 -0.15 -6.44 16 8 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 9 N -0.61 -15.77 3.39 -170.07 -0.58 -16.35 16 10 C 0.15 3.69 5.89 -2.53 -0.01 3.68 16 11 C -0.14 -2.56 6.53 -24.58 -0.16 -2.72 16 12 C -0.10 -1.62 2.98 -88.79 -0.26 -1.89 16 13 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.12 -1.49 4.71 -26.73 -0.13 -1.62 16 15 C 0.11 1.45 5.52 -4.05 -0.02 1.43 16 16 N -0.70 -8.10 5.54 -61.13 -0.34 -8.44 16 17 C 0.57 7.24 7.82 -12.15 -0.09 7.14 16 18 O -0.52 -8.01 16.32 5.36 0.09 -7.93 16 19 C 0.06 0.71 6.76 -82.74 -0.56 0.15 16 20 C 0.13 1.35 10.75 -16.92 -0.18 1.17 16 21 N -0.43 -4.52 10.45 -10.53 -0.11 -4.63 16 22 C 0.09 0.89 6.60 -84.70 -0.56 0.34 16 23 C -0.09 -0.59 9.98 -39.49 -0.39 -0.99 16 24 C -0.09 -0.39 9.95 -39.90 -0.40 -0.79 16 25 C -0.10 -0.46 9.95 -39.93 -0.40 -0.86 16 26 C -0.07 -0.50 9.99 -39.42 -0.39 -0.89 16 27 C 0.08 0.73 6.60 -84.79 -0.56 0.17 16 28 N -0.39 -4.18 9.64 -7.39 -0.07 -4.25 16 29 C 0.14 2.91 5.99 -3.06 -0.02 2.89 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 32 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 37 H 0.08 1.12 7.49 -51.93 -0.39 0.73 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.41 4.04 7.81 -40.82 -0.32 3.72 16 40 H 0.19 1.69 7.62 -52.49 -0.40 1.29 16 41 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 42 H 0.14 0.21 8.06 -52.49 -0.42 -0.21 16 43 H 0.14 0.25 8.06 -52.48 -0.42 -0.18 16 44 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 45 H 0.02 0.46 7.76 -51.93 -0.40 0.06 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -33.74 381.96 -10.54 -44.28 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.43 Total: 0.56 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -4.39 Total: 0.30 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.54 Total: -60.35 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.74 -10.54 -44.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713731121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.018 kcal (2) G-P(sol) polarization free energy of solvation -33.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds