Wall clock time and date at job start Sat Apr 11 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00439 * 2 1 4 4 H 1.48509 * 109.47160 * 240.00303 * 3 2 1 5 5 H 1.48503 * 109.46877 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47468 * 119.99994 * 3 2 1 7 7 C 1.38814 * 119.99772 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00012 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00049 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46963 * 180.02562 * 10 9 7 12 12 H 1.08996 * 110.43320 * 56.08449 * 11 10 9 13 13 C 1.54268 * 110.48341 * 293.54388 * 11 10 9 14 14 C 1.53875 * 106.59850 * 217.71305 * 13 11 10 15 15 C 1.54261 * 106.59738 * 359.97438 * 14 13 11 16 16 H 1.08997 * 110.49179 * 264.93075 * 15 14 13 17 17 N 1.46508 * 110.48497 * 142.41994 * 15 14 13 18 18 C 1.34775 * 119.99460 * 86.45649 * 17 15 14 19 19 O 1.21501 * 120.00608 * 359.97438 * 18 17 15 20 20 C 1.48234 * 119.99667 * 179.97438 * 18 17 15 21 21 C 1.40574 * 119.75061 * 179.97438 * 20 18 17 22 22 N 1.31256 * 120.57465 * 180.02562 * 21 20 18 23 23 C 1.33784 * 119.80865 * 359.97438 * 22 21 20 24 24 C 1.40545 * 121.00627 * 180.02562 * 23 22 21 25 25 C 1.36082 * 119.74977 * 179.97438 * 24 23 22 26 26 C 1.39472 * 121.01874 * 359.97438 * 25 24 23 27 27 C 1.35994 * 120.98540 * 0.02562 * 26 25 24 28 28 C 1.40824 * 119.69403 * 0.02562 * 27 26 25 29 29 N 1.32166 * 119.74715 * 359.72725 * 20 18 17 30 30 C 1.54890 * 110.48342 * 178.77185 * 11 10 9 31 31 H 0.97006 * 119.99403 * 0.02562 * 1 2 3 32 32 H 0.97002 * 119.99631 * 0.02562 * 9 7 2 33 33 H 1.09000 * 109.47615 * 60.00161 * 10 9 7 34 34 H 1.09002 * 109.47304 * 300.00048 * 10 9 7 35 35 H 1.09004 * 110.03178 * 336.99794 * 13 11 10 36 36 H 1.09001 * 110.03287 * 98.37793 * 13 11 10 37 37 H 1.09000 * 110.03415 * 119.28896 * 14 13 11 38 38 H 1.08996 * 110.03228 * 240.71697 * 14 13 11 39 39 H 0.96997 * 120.00075 * 266.45305 * 17 15 14 40 40 H 1.08005 * 119.71287 * 359.97438 * 21 20 18 41 41 H 1.07996 * 120.11983 * 359.96479 * 24 23 22 42 42 H 1.07999 * 119.48831 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.50995 * 180.02562 * 26 25 24 44 44 H 1.07998 * 120.15114 * 180.02562 * 27 26 25 45 45 H 1.08997 * 110.75347 * 274.92639 * 30 11 10 46 46 H 1.08992 * 110.75945 * 38.30706 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0016 10 6 2.0579 -3.6568 0.0027 11 6 1.0636 -4.8197 0.0031 12 1 0.3835 -4.7392 -0.8448 13 6 0.2735 -4.8540 1.3277 14 6 0.0907 -6.3377 1.6922 15 6 0.7755 -7.1533 0.5761 16 1 0.0485 -7.4519 -0.1791 17 7 1.4430 -8.3305 1.1373 18 6 0.7532 -9.4743 1.3173 19 8 -0.4222 -9.5290 1.0147 20 6 1.4287 -10.6657 1.8845 21 6 0.7042 -11.8558 2.0706 22 7 1.2860 -12.9202 2.5721 23 6 2.5799 -12.8743 2.9092 24 6 3.2282 -13.9990 3.4476 25 6 4.5453 -13.9240 3.7810 26 6 5.2674 -12.7451 3.5967 27 6 4.6758 -11.6355 3.0786 28 6 3.3140 -11.6730 2.7221 29 7 2.7089 -10.6023 2.2069 30 6 1.8139 -6.1744 -0.0268 31 1 -0.4849 0.8401 -0.0004 32 1 0.3555 -2.3881 0.0016 33 1 2.6846 -3.7138 0.8928 34 1 2.6846 -3.7154 -0.8872 35 1 0.8347 -4.3436 2.1105 36 1 -0.6984 -4.3788 1.1951 37 1 0.5630 -6.5474 2.6519 38 1 -0.9703 -6.5834 1.7362 39 1 2.3813 -8.2868 1.3791 40 1 -0.3405 -11.8945 1.7994 41 1 2.6829 -14.9193 3.5962 42 1 5.0394 -14.7910 4.1941 43 1 6.3119 -12.7127 3.8695 44 1 5.2478 -10.7298 2.9412 45 1 2.0615 -6.4563 -1.0501 46 1 2.7107 -6.1331 0.5914 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717873772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:55 Heat of formation + Delta-G solvation = 35.929044 kcal Electronic energy + Delta-G solvation = -27635.352723 eV Core-core repulsion = 23717.717041 eV Total energy + Delta-G solvation = -3917.635682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.01687 -40.05802 -38.28699 -37.62243 -35.51120 -34.83720 -33.41987 -31.59768 -31.19001 -30.91683 -28.76684 -27.89358 -26.21907 -25.04607 -24.24210 -22.79651 -22.17045 -21.80060 -20.62165 -19.39727 -19.07426 -18.81788 -17.91813 -17.05022 -16.40978 -16.26900 -15.92677 -15.61390 -15.37806 -14.93875 -14.71142 -14.61695 -14.42528 -14.16098 -13.52593 -13.26014 -13.20321 -12.83050 -12.52091 -12.45729 -12.34843 -12.28062 -12.24135 -12.01908 -11.81061 -11.57644 -11.06593 -10.82772 -10.76329 -10.60438 -10.48187 -10.35598 -10.10676 -9.92310 -9.66743 -9.60927 -9.55527 -9.21264 -9.13123 -8.83527 -6.88128 -5.73389 -3.01626 -0.52015 -0.11197 1.29224 1.94773 2.68519 2.73874 3.36253 3.45672 3.49861 3.51100 3.51810 3.55201 3.70175 4.19494 4.27358 4.44180 4.55205 4.59833 4.66640 4.70127 4.79625 4.86231 5.06075 5.25862 5.29529 5.47747 5.49651 5.56917 5.59646 5.61571 5.65107 5.70068 5.74828 5.84840 5.92096 6.06457 6.08782 6.15985 6.29456 6.35335 6.39997 6.57199 6.61657 6.65517 6.83596 6.96589 7.04581 7.29738 7.71872 7.86608 8.45834 9.56772 10.15989 10.50665 11.49449 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.001796 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.287057 B =15584.887788 C =16565.424616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.161 3.839 11 C -0.095 4.095 12 H 0.078 0.922 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.137 3.863 16 H 0.096 0.904 17 N -0.697 5.697 18 C 0.573 3.427 19 O -0.524 6.524 20 C 0.062 3.938 21 C 0.128 3.872 22 N -0.425 5.425 23 C 0.093 3.907 24 C -0.089 4.089 25 C -0.088 4.088 26 C -0.102 4.102 27 C -0.074 4.074 28 C 0.076 3.924 29 N -0.393 5.393 30 C -0.120 4.120 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.019 0.981 34 H 0.017 0.983 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.410 0.590 40 H 0.189 0.811 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.072 0.928 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.591 -31.380 7.364 33.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.114 4.114 12 H 0.096 0.904 13 C -0.150 4.150 14 C -0.172 4.172 15 C 0.033 3.967 16 H 0.115 0.885 17 N -0.347 5.347 18 C 0.356 3.644 19 O -0.399 6.399 20 C -0.095 4.095 21 C -0.047 4.047 22 N -0.138 5.138 23 C -0.032 4.032 24 C -0.109 4.109 25 C -0.108 4.108 26 C -0.122 4.122 27 C -0.094 4.094 28 C -0.050 4.050 29 N -0.111 5.111 30 C -0.159 4.159 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.246 0.754 40 H 0.205 0.795 41 H 0.160 0.840 42 H 0.156 0.844 43 H 0.157 0.843 44 H 0.163 0.837 45 H 0.091 0.909 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.004 -31.350 7.195 33.146 hybrid contribution 0.613 1.004 0.166 1.188 sum 8.617 -30.346 7.361 32.393 Atomic orbital electron populations 1.69653 1.05077 1.25691 1.57787 1.24737 0.95526 0.97654 1.03149 0.86270 0.78505 0.83618 0.77795 1.21327 1.21709 1.21332 1.19192 0.90975 0.84269 1.42630 0.91323 1.42338 1.05908 0.99911 1.89423 1.20671 0.93015 0.85313 0.97636 1.22095 0.97542 0.93578 0.98168 0.90403 1.22102 1.01033 0.94241 0.97620 1.22562 1.00862 0.95702 0.98052 1.22080 0.95256 0.83498 0.95824 0.88550 1.45980 1.14897 1.10891 1.62933 1.17627 0.86025 0.82115 0.78682 1.90822 1.14822 1.83578 1.50641 1.22531 0.91097 0.96463 0.99393 1.24015 1.01965 0.87092 0.91608 1.68846 1.08689 1.28048 1.08267 1.19825 0.90880 0.94587 0.97896 1.20849 0.94685 0.97319 0.98005 1.21138 0.93839 0.98468 0.97363 1.21082 1.00927 0.92375 0.97776 1.20938 0.91531 0.99861 0.97023 1.19600 0.95900 0.90014 0.99529 1.68499 1.08780 1.28182 1.05594 1.22750 0.97718 0.94445 1.00985 0.93508 0.78209 0.96355 0.96495 0.91068 0.91381 0.91781 0.91426 0.75388 0.79451 0.83951 0.84367 0.84289 0.83745 0.90924 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.53 5.44 -59.91 -0.33 -18.85 16 10 C 0.16 3.19 5.57 -4.04 -0.02 3.17 16 11 C -0.09 -1.48 2.93 -88.96 -0.26 -1.74 16 12 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 13 C -0.11 -1.73 6.05 -25.61 -0.15 -1.88 16 14 C -0.13 -1.74 6.53 -25.62 -0.17 -1.91 16 15 C 0.14 1.66 3.16 -66.25 -0.21 1.45 16 16 H 0.10 1.25 7.66 -51.93 -0.40 0.85 16 17 N -0.70 -7.63 5.11 -53.00 -0.27 -7.90 16 18 C 0.57 6.88 7.81 -12.15 -0.09 6.78 16 19 O -0.52 -7.55 16.03 5.37 0.09 -7.46 16 20 C 0.06 0.67 6.76 -82.73 -0.56 0.11 16 21 C 0.13 1.30 10.75 -16.92 -0.18 1.11 16 22 N -0.43 -4.38 10.45 -10.52 -0.11 -4.49 16 23 C 0.09 0.87 6.60 -84.70 -0.56 0.31 16 24 C -0.09 -0.58 9.98 -39.49 -0.39 -0.97 16 25 C -0.09 -0.38 9.95 -39.90 -0.40 -0.77 16 26 C -0.10 -0.45 9.95 -39.93 -0.40 -0.84 16 27 C -0.07 -0.49 9.99 -39.41 -0.39 -0.88 16 28 C 0.08 0.71 6.60 -84.79 -0.56 0.15 16 29 N -0.39 -4.04 9.64 -7.38 -0.07 -4.11 16 30 C -0.12 -1.47 5.92 -24.72 -0.15 -1.61 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.38 10.22 7.52 -40.82 -0.31 9.91 16 33 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 1.20 7.77 -51.93 -0.40 0.79 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.82 8.04 -51.93 -0.42 0.40 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.41 3.91 7.87 -40.82 -0.32 3.59 16 40 H 0.19 1.60 7.62 -52.48 -0.40 1.20 16 41 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.14 0.19 8.06 -52.49 -0.42 -0.23 16 43 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.86 7.95 -51.93 -0.41 0.44 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -33.52 386.19 -10.34 -43.86 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.43 Total: 8.25 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -4.74 Total: -4.96 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.05 Total: -63.03 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.09 Total: -7.46 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.52 -10.34 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717873772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.792 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds