Wall clock time and date at job start Sat Apr 11 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86808 * 119.99891 * 2 1 4 4 H 1.48500 * 109.46936 * 239.99995 * 3 2 1 5 5 H 1.48501 * 109.47063 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46954 * 120.00119 * 3 2 1 7 7 C 1.38810 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99869 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00119 * 359.97438 * 7 2 1 10 10 C 1.46502 * 120.00285 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47497 * 179.97438 * 10 9 7 12 12 H 1.09003 * 110.42671 * 52.45797 * 11 10 9 13 13 C 1.54882 * 110.59884 * 289.84547 * 11 10 9 14 14 C 1.55016 * 102.75352 * 203.31037 * 13 11 10 15 15 C 1.54269 * 104.13753 * 37.94901 * 14 13 11 16 16 H 1.09004 * 110.02986 * 217.07193 * 15 14 13 17 17 N 1.46500 * 110.03114 * 95.68639 * 15 14 13 18 18 C 1.34775 * 119.99980 * 87.09408 * 17 15 14 19 19 O 1.21600 * 119.99733 * 359.97438 * 18 17 15 20 20 C 1.47501 * 120.00362 * 179.97438 * 18 17 15 21 21 C 1.38684 * 120.33756 * 0.02562 * 20 18 17 22 22 C 1.38990 * 120.63563 * 179.72703 * 21 20 18 23 23 C 1.36218 * 121.13719 * 0.51518 * 22 21 20 24 24 C 1.40694 * 120.17013 * 359.48436 * 23 22 21 25 25 N 1.33762 * 120.97232 * 180.28585 * 24 23 22 26 26 C 1.31331 * 119.73153 * 179.97438 * 25 24 23 27 27 C 1.39645 * 120.68211 * 359.97438 * 26 25 24 28 28 N 1.31456 * 120.64352 * 359.97438 * 27 26 25 29 29 C 1.33492 * 119.71737 * 0.04888 * 28 27 26 30 30 C 1.53871 * 106.63805 * 336.37858 * 15 14 13 31 31 H 0.97001 * 119.99812 * 359.97438 * 1 2 3 32 32 H 0.96993 * 120.00113 * 359.97438 * 9 7 2 33 33 H 1.09000 * 109.47063 * 59.99716 * 10 9 7 34 34 H 1.09000 * 109.47429 * 300.00280 * 10 9 7 35 35 H 1.08997 * 110.75755 * 321.63229 * 13 11 10 36 36 H 1.09004 * 110.76024 * 84.82510 * 13 11 10 37 37 H 1.08998 * 110.50375 * 279.29607 * 14 13 11 38 38 H 1.09003 * 110.52762 * 156.61650 * 14 13 11 39 39 H 0.97000 * 119.99987 * 267.09586 * 17 15 14 40 40 H 1.07997 * 119.67824 * 359.97416 * 21 20 18 41 41 H 1.07998 * 119.43026 * 180.25817 * 22 21 20 42 42 H 1.08002 * 119.91660 * 179.76669 * 23 22 21 43 43 H 1.07997 * 119.66083 * 179.97438 * 26 25 24 44 44 H 1.07996 * 119.68282 * 180.02562 * 27 26 25 45 45 H 1.09000 * 110.03459 * 119.30784 * 30 15 14 46 46 H 1.09001 * 110.03377 * 240.68938 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0640 -4.8197 -0.0008 12 1 0.3428 -4.7043 -0.8099 13 6 0.3374 -4.9144 1.3637 14 6 -0.1142 -6.3967 1.4089 15 6 1.0586 -7.1675 0.7683 16 1 0.6785 -7.9940 0.1679 17 7 1.9543 -7.6752 1.8106 18 6 1.7120 -8.8707 2.3837 19 8 0.7497 -9.5277 2.0360 20 6 2.6141 -9.3821 3.4327 21 6 3.7133 -8.6384 3.8350 22 6 4.5641 -9.1118 4.8269 23 6 4.3499 -10.3183 5.4219 24 6 3.2470 -11.1065 5.0453 25 7 3.0182 -12.2910 5.6229 26 6 1.9810 -13.0066 5.2529 27 6 1.1128 -12.5435 4.2620 28 7 1.3173 -11.3821 3.6812 29 6 2.3656 -10.6379 4.0410 30 6 1.8073 -6.1656 -0.1279 31 1 -0.4850 0.8401 0.0004 32 1 0.3557 -2.3881 0.0002 33 1 2.6856 -3.7149 0.8878 34 1 2.6842 -3.7141 -0.8921 35 1 1.0226 -4.6942 2.1823 36 1 -0.5224 -4.2450 1.3909 37 1 -1.0253 -6.5361 0.8271 38 1 -0.2652 -6.7190 2.4391 39 1 2.7217 -7.1508 2.0882 40 1 3.9077 -7.6803 3.3760 41 1 5.4121 -8.5146 5.1281 42 1 5.0258 -10.6687 6.1879 43 1 1.7975 -13.9630 5.7198 44 1 0.2645 -13.1450 3.9704 45 1 2.8370 -6.0569 0.2126 46 1 1.7906 -6.5058 -1.1633 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717882228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:10 Heat of formation + Delta-G solvation = 45.629030 kcal Electronic energy + Delta-G solvation = -28185.986580 eV Core-core repulsion = 24268.771521 eV Total energy + Delta-G solvation = -3917.215059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.85930 -39.99945 -38.16565 -37.46881 -35.07693 -34.74101 -33.39574 -31.49227 -31.25255 -30.71284 -28.76927 -27.75062 -25.86913 -24.70719 -24.40939 -23.73564 -22.17230 -20.98544 -20.19644 -19.65876 -19.06640 -18.64249 -17.34274 -17.02041 -16.77522 -16.22087 -15.62411 -15.45982 -15.35408 -14.81264 -14.65076 -14.47376 -14.37040 -14.04243 -13.68134 -13.23379 -13.15299 -12.80502 -12.66001 -12.34126 -12.25527 -12.06643 -12.02667 -11.91465 -11.58373 -11.42912 -11.05658 -10.83190 -10.78396 -10.54545 -10.29476 -10.23185 -10.09566 -9.96467 -9.65644 -9.45458 -9.27590 -9.14848 -8.93298 -8.85412 -6.90189 -5.75365 -3.03686 -0.43064 0.11505 1.28634 2.20420 2.95110 2.99125 3.43869 3.48141 3.49422 3.57305 3.68806 3.73270 3.88490 4.23456 4.31401 4.51130 4.58219 4.62599 4.71096 4.78360 4.80323 4.89990 5.07514 5.22087 5.32414 5.44191 5.49922 5.56333 5.62412 5.66224 5.69121 5.72566 5.79140 5.87603 5.93625 6.09048 6.12397 6.15702 6.27733 6.33387 6.52456 6.59406 6.61793 6.81860 6.87571 6.93909 7.34556 7.44314 7.69504 8.16361 8.43819 9.54721 10.14028 10.48529 11.47473 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021608 B = 0.002016 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.519791 B =13885.208820 C =14701.336318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.162 3.838 11 C -0.098 4.098 12 H 0.077 0.923 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.144 3.856 16 H 0.089 0.911 17 N -0.718 5.718 18 C 0.551 3.449 19 O -0.500 6.500 20 C -0.097 4.097 21 C -0.059 4.059 22 C -0.106 4.106 23 C -0.060 4.060 24 C 0.070 3.930 25 N -0.426 5.426 26 C 0.075 3.925 27 C 0.075 3.925 28 N -0.388 5.388 29 C 0.112 3.888 30 C -0.122 4.122 31 H 0.255 0.745 32 H 0.384 0.616 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.397 0.603 40 H 0.143 0.857 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.176 0.824 44 H 0.176 0.824 45 H 0.071 0.929 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.240 -26.690 10.595 29.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.371 4.371 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.034 3.966 11 C -0.117 4.117 12 H 0.095 0.905 13 C -0.149 4.149 14 C -0.171 4.171 15 C 0.040 3.960 16 H 0.107 0.893 17 N -0.372 5.372 18 C 0.336 3.664 19 O -0.374 6.374 20 C -0.102 4.102 21 C -0.080 4.080 22 C -0.126 4.126 23 C -0.079 4.079 24 C -0.054 4.054 25 N -0.140 5.140 26 C -0.100 4.100 27 C -0.100 4.100 28 N -0.101 5.101 29 C -0.014 4.014 30 C -0.160 4.160 31 H 0.065 0.935 32 H 0.218 0.782 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.232 0.768 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.162 0.838 43 H 0.193 0.807 44 H 0.193 0.807 45 H 0.090 0.910 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.769 -26.842 10.283 29.531 hybrid contribution 0.533 1.153 0.225 1.290 sum 7.301 -25.689 10.509 28.700 Atomic orbital electron populations 1.69649 1.05085 1.25719 1.57762 1.24743 0.95527 0.97671 1.03144 0.86272 0.78511 0.83621 0.77799 1.21308 1.21708 1.21328 1.19180 0.90951 0.84272 1.42656 0.91342 1.42344 1.05894 0.99926 1.89392 1.20678 0.93047 0.85416 0.97464 1.22177 0.97919 0.93623 0.98003 0.90453 1.22514 1.00466 0.94786 0.97110 1.22810 0.97546 0.95922 1.00868 1.21660 0.89971 0.96433 0.87962 0.89327 1.46176 1.30602 1.19866 1.40508 1.17889 0.85154 0.81484 0.81837 1.90854 1.28213 1.56968 1.61374 1.19977 0.97216 0.93962 0.99004 1.21639 0.92175 0.99119 0.95088 1.20974 0.99896 0.95923 0.95790 1.21011 0.94997 0.93126 0.98809 1.19548 0.96844 0.93421 0.95609 1.68706 1.17772 1.03940 1.23608 1.24125 0.90677 1.00149 0.95053 1.24304 0.99523 0.93192 0.92959 1.69038 1.15178 1.03783 1.22067 1.19300 0.92541 0.94712 0.94799 1.22452 0.99516 0.94620 0.99460 0.93489 0.78236 0.96527 0.96573 0.91622 0.91022 0.90892 0.91703 0.76762 0.83972 0.83719 0.83812 0.80689 0.80669 0.91006 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -18.30 5.49 -59.91 -0.33 -18.63 16 10 C 0.16 3.13 5.55 -4.04 -0.02 3.10 16 11 C -0.10 -1.51 2.88 -88.97 -0.26 -1.77 16 12 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.11 -1.67 6.20 -24.67 -0.15 -1.83 16 14 C -0.13 -1.76 6.54 -25.00 -0.16 -1.93 16 15 C 0.14 1.75 3.23 -66.81 -0.22 1.54 16 16 H 0.09 1.16 7.59 -51.93 -0.39 0.77 16 17 N -0.72 -7.90 4.99 -53.77 -0.27 -8.17 16 18 C 0.55 7.22 7.76 -12.49 -0.10 7.12 16 19 O -0.50 -8.32 14.85 5.28 0.08 -8.25 16 20 C -0.10 -1.08 5.90 -104.63 -0.62 -1.70 16 21 C -0.06 -0.45 9.52 -39.14 -0.37 -0.82 16 22 C -0.11 -0.65 9.93 -40.03 -0.40 -1.05 16 23 C -0.06 -0.45 9.97 -39.38 -0.39 -0.85 16 24 C 0.07 0.72 6.59 -84.82 -0.56 0.16 16 25 N -0.43 -4.12 10.46 -10.82 -0.11 -4.24 16 26 C 0.08 0.54 11.21 -17.24 -0.19 0.35 16 27 C 0.08 0.64 11.22 -17.19 -0.19 0.45 16 28 N -0.39 -4.93 8.56 -10.59 -0.09 -5.02 16 29 C 0.11 1.36 6.60 -84.53 -0.56 0.80 16 30 C -0.12 -1.47 6.14 -25.62 -0.16 -1.62 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.38 10.13 7.64 -40.82 -0.31 9.82 16 33 H 0.02 0.32 8.02 -51.93 -0.42 -0.09 16 34 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 1.01 7.97 -51.93 -0.41 0.59 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 39 H 0.40 3.39 6.33 -40.82 -0.26 3.13 16 40 H 0.14 0.72 6.37 -52.49 -0.33 0.38 16 41 H 0.15 0.45 8.06 -52.49 -0.42 0.02 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.07 0.79 7.31 -51.93 -0.38 0.41 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -36.42 381.37 -10.15 -46.57 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -6.28 Total: 7.57 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -4.59 Total: -5.39 kcal Atomic # 7 Polarization: -63.50 SS G_CDS: -0.08 Total: -63.58 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.42 -10.15 -46.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717882228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.196 kcal (2) G-P(sol) polarization free energy of solvation -36.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds