Wall clock time and date at job start Sat Apr 11 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48505 * 109.46961 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47388 * 300.00043 * 3 2 1 6 6 H 1.48499 * 109.46917 * 60.00507 * 3 2 1 7 7 C 1.38814 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00030 * 179.97438 * 7 2 1 9 9 N 1.36929 * 119.99879 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00059 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47657 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.01376 * 306.39079 * 11 10 9 13 13 C 1.54270 * 110.02894 * 67.83184 * 11 10 9 14 14 C 1.54889 * 104.19339 * 142.89857 * 13 11 10 15 15 C 1.54880 * 102.74771 * 322.05240 * 14 13 11 16 16 H 1.08995 * 110.60688 * 279.21149 * 15 14 13 17 17 N 1.46504 * 110.48506 * 156.62134 * 15 14 13 18 18 C 1.34776 * 119.99753 * 90.22455 * 17 15 14 19 19 O 1.21587 * 120.00342 * 0.02562 * 18 17 15 20 20 C 1.47506 * 119.99917 * 180.02562 * 18 17 15 21 21 C 1.38679 * 120.33960 * 0.02562 * 20 18 17 22 22 C 1.38987 * 120.63655 * 179.97438 * 21 20 18 23 23 C 1.36223 * 121.14039 * 0.02562 * 22 21 20 24 24 C 1.40687 * 120.16714 * 0.04491 * 23 22 21 25 25 N 1.33754 * 120.96587 * 179.97438 * 24 23 22 26 26 C 1.31334 * 119.73314 * 180.02562 * 25 24 23 27 27 C 1.39646 * 120.67915 * 359.97438 * 26 25 24 28 28 N 1.31454 * 120.64551 * 359.97438 * 27 26 25 29 29 C 1.33493 * 119.72230 * 0.02678 * 28 27 26 30 30 C 1.53867 * 110.03616 * 184.99750 * 11 10 9 31 31 H 0.97001 * 120.00112 * 359.97438 * 1 2 3 32 32 H 0.97001 * 120.00680 * 359.97438 * 9 7 2 33 33 H 1.09003 * 109.47100 * 59.99501 * 10 9 7 34 34 H 1.09004 * 109.47105 * 299.99903 * 10 9 7 35 35 H 1.09006 * 110.48484 * 261.57890 * 13 11 10 36 36 H 1.09001 * 110.48770 * 24.08462 * 13 11 10 37 37 H 1.09005 * 110.75216 * 203.74130 * 14 13 11 38 38 H 1.08997 * 110.75429 * 80.37330 * 14 13 11 39 39 H 0.97001 * 119.99986 * 270.22721 * 17 15 14 40 40 H 1.07995 * 119.68233 * 359.97438 * 21 20 18 41 41 H 1.08003 * 119.42994 * 180.02562 * 22 21 20 42 42 H 1.07996 * 119.91619 * 180.02562 * 23 22 21 43 43 H 1.07996 * 119.65811 * 179.97438 * 26 25 24 44 44 H 1.07992 * 119.67443 * 180.02562 * 27 26 25 45 45 H 1.08996 * 110.03422 * 121.43034 * 30 11 10 46 46 H 1.09004 * 110.03333 * 359.97438 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6567 -0.0016 11 6 1.0640 -4.8198 -0.0022 12 1 0.3594 -4.7087 0.8219 13 6 0.3054 -4.8657 -1.3448 14 6 0.1429 -6.3780 -1.6376 15 6 1.4883 -6.9677 -1.1467 16 1 2.2650 -6.8291 -1.8988 17 7 1.3376 -8.3885 -0.8228 18 6 1.5508 -9.3221 -1.7712 19 8 1.8686 -8.9853 -2.8954 20 6 1.3986 -10.7526 -1.4453 21 6 1.0358 -11.1448 -0.1655 22 6 0.8901 -12.4909 0.1482 23 6 1.0988 -13.4589 -0.7873 24 6 1.4696 -13.1071 -2.0980 25 7 1.6790 -14.0443 -3.0290 26 6 2.0249 -13.6887 -4.2450 27 6 2.1761 -12.3408 -4.5774 28 7 1.9745 -11.4025 -3.6791 29 6 1.6223 -11.7405 -2.4366 30 6 1.8160 -6.1562 0.1237 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3881 -0.0016 33 1 2.6842 -3.7148 0.8888 34 1 2.6855 -3.7141 -0.8912 35 1 -0.6700 -4.3887 -1.2484 36 1 0.8889 -4.3837 -2.1293 37 1 0.0112 -6.5527 -2.7054 38 1 -0.6906 -6.7936 -1.0714 39 1 1.0844 -8.6573 0.0741 40 1 0.8649 -10.3970 0.5947 41 1 0.6065 -12.7744 1.1511 42 1 0.9796 -14.4989 -0.5220 43 1 2.1940 -14.4465 -4.9957 44 1 2.4606 -12.0667 -5.5824 45 1 1.4758 -6.6942 1.0085 46 1 2.8894 -5.9763 0.1848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717882230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:19 Heat of formation + Delta-G solvation = 45.143579 kcal Electronic energy + Delta-G solvation = -27955.410114 eV Core-core repulsion = 24038.174004 eV Total energy + Delta-G solvation = -3917.236110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.89195 -39.96463 -38.20230 -37.52012 -35.11241 -34.77151 -33.47996 -31.49666 -31.29138 -30.73873 -28.76367 -27.64984 -25.90179 -24.72532 -24.42869 -23.66996 -22.14272 -20.87675 -20.54684 -19.48715 -19.26753 -18.67474 -17.38355 -16.99013 -16.81396 -16.26517 -15.66183 -15.51245 -15.03801 -14.89694 -14.71120 -14.49418 -14.32427 -14.07317 -13.61266 -13.29037 -13.20071 -12.76832 -12.70238 -12.38466 -12.31412 -12.15700 -12.05575 -11.93196 -11.65588 -11.38149 -11.03271 -10.84907 -10.67780 -10.59729 -10.30108 -10.16050 -10.11254 -9.87514 -9.64698 -9.49408 -9.30258 -9.16719 -8.95636 -8.83438 -6.87307 -5.73322 -3.01200 -0.47107 0.07708 1.25343 2.15956 2.91157 2.95622 3.45454 3.51122 3.53335 3.53919 3.65270 3.70109 3.84782 4.17698 4.26600 4.47149 4.57672 4.61546 4.69434 4.74922 4.83435 4.88480 5.07992 5.17901 5.28080 5.38362 5.54366 5.57914 5.60832 5.63240 5.65707 5.67407 5.72457 5.89845 5.95223 6.08006 6.14353 6.20526 6.30253 6.33622 6.51878 6.59168 6.68919 6.84464 6.84753 6.97745 7.31591 7.40885 7.73893 8.13738 8.46035 9.57203 10.16375 10.51110 11.49777 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029551 B = 0.001809 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.286368 B =15472.693836 C =15977.447656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.096 4.096 12 H 0.074 0.926 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.141 3.859 16 H 0.097 0.903 17 N -0.720 5.720 18 C 0.550 3.450 19 O -0.496 6.496 20 C -0.095 4.095 21 C -0.061 4.061 22 C -0.107 4.107 23 C -0.060 4.060 24 C 0.070 3.930 25 N -0.427 5.427 26 C 0.077 3.923 27 C 0.077 3.923 28 N -0.387 5.387 29 C 0.112 3.888 30 C -0.121 4.121 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.016 0.984 34 H 0.020 0.980 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.395 0.605 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.177 0.823 44 H 0.177 0.823 45 H 0.065 0.935 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.105 -32.795 -1.969 32.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.092 0.908 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.037 3.963 16 H 0.115 0.885 17 N -0.373 5.373 18 C 0.335 3.665 19 O -0.370 6.370 20 C -0.100 4.100 21 C -0.082 4.082 22 C -0.127 4.127 23 C -0.079 4.079 24 C -0.054 4.054 25 N -0.141 5.141 26 C -0.099 4.099 27 C -0.098 4.098 28 N -0.100 5.100 29 C -0.014 4.014 30 C -0.159 4.159 31 H 0.064 0.936 32 H 0.217 0.783 33 H 0.034 0.966 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.230 0.770 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.194 0.806 44 H 0.194 0.806 45 H 0.084 0.916 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.446 -32.336 -2.588 32.472 hybrid contribution 0.000 0.746 0.408 0.850 sum 1.445 -31.590 -2.180 31.698 Atomic orbital electron populations 1.69668 1.05085 1.25440 1.58106 1.24736 0.95531 0.97666 1.03244 0.86123 0.78790 0.84196 0.77144 1.20588 1.21908 1.21932 1.19291 0.91065 0.84257 1.42185 0.91195 1.42361 1.05885 0.99979 1.89382 1.20801 0.93059 0.85380 0.97644 1.21881 0.97701 0.93738 0.98163 0.90769 1.22319 1.01022 0.94190 0.97336 1.22890 0.96565 0.96510 1.01206 1.21969 0.98561 0.77781 0.97955 0.88513 1.46073 1.71109 1.06676 1.13451 1.17894 0.78497 0.84635 0.85428 1.90870 1.44467 1.81443 1.20180 1.19988 1.03399 0.93450 0.93146 1.21594 0.94559 0.97048 0.95012 1.20953 0.99301 0.92045 1.00413 1.21006 0.95845 1.01022 0.90039 1.19551 1.00719 0.89845 0.95305 1.68708 1.08549 1.35506 1.01316 1.24140 0.94572 0.97002 0.94177 1.24323 0.95043 0.89945 1.00536 1.69047 1.05750 1.35396 0.99845 1.19314 0.98101 0.91664 0.92308 1.22407 1.01469 0.95865 0.96195 0.93634 0.78268 0.96578 0.96219 0.91244 0.90835 0.91444 0.91607 0.76985 0.84099 0.83799 0.83824 0.80635 0.80593 0.91609 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 3 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 9 N -0.73 -18.66 5.45 -59.90 -0.33 -18.98 16 10 C 0.16 3.19 5.31 -4.04 -0.02 3.17 16 11 C -0.10 -1.50 2.96 -89.50 -0.27 -1.76 16 12 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 13 C -0.11 -1.73 6.08 -25.07 -0.15 -1.88 16 14 C -0.13 -1.76 6.58 -24.74 -0.16 -1.92 16 15 C 0.14 1.76 3.22 -66.27 -0.21 1.55 16 16 H 0.10 1.41 7.55 -51.93 -0.39 1.01 16 17 N -0.72 -7.52 5.11 -53.25 -0.27 -7.79 16 18 C 0.55 7.07 7.77 -12.48 -0.10 6.97 16 19 O -0.50 -8.37 14.84 5.29 0.08 -8.29 16 20 C -0.10 -1.01 5.90 -104.63 -0.62 -1.63 16 21 C -0.06 -0.41 9.52 -39.14 -0.37 -0.78 16 22 C -0.11 -0.56 9.93 -40.03 -0.40 -0.96 16 23 C -0.06 -0.41 9.97 -39.38 -0.39 -0.80 16 24 C 0.07 0.69 6.59 -84.82 -0.56 0.13 16 25 N -0.43 -3.98 10.46 -10.82 -0.11 -4.09 16 26 C 0.08 0.54 11.21 -17.24 -0.19 0.34 16 27 C 0.08 0.64 11.22 -17.19 -0.19 0.45 16 28 N -0.39 -4.89 8.56 -10.59 -0.09 -4.98 16 29 C 0.11 1.31 6.60 -84.53 -0.56 0.76 16 30 C -0.12 -1.47 6.19 -25.62 -0.16 -1.63 16 31 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.38 10.22 7.55 -40.82 -0.31 9.92 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.28 7.76 -51.93 -0.40 0.87 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.39 2.83 6.39 -40.82 -0.26 2.57 16 40 H 0.14 0.51 6.37 -52.49 -0.33 0.18 16 41 H 0.14 0.28 8.06 -52.48 -0.42 -0.14 16 42 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.07 0.65 7.73 -51.93 -0.40 0.25 16 46 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 LS Contribution 380.99 15.07 5.74 5.74 Total: -1.00 -37.16 380.99 -10.15 -47.31 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -6.27 Total: 6.63 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -4.60 Total: -5.43 kcal Atomic # 7 Polarization: -63.57 SS G_CDS: -0.08 Total: -63.64 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.08 Total: -8.29 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.16 -10.15 -47.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717882230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.451 kcal (2) G-P(sol) polarization free energy of solvation -37.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds