Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00219 * 2 1 4 4 H 1.48504 * 109.46825 * 240.00239 * 3 2 1 5 5 H 1.48505 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47354 * 119.99905 * 3 2 1 7 7 C 1.38810 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00062 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00042 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.26907 * 35.62023 * 10 9 7 12 12 C 1.51369 * 110.30610 * 273.54425 * 10 9 7 13 13 C 1.38503 * 130.39039 * 78.23968 * 12 10 9 14 14 C 1.38098 * 120.21650 * 180.02562 * 13 12 10 15 15 C 1.38258 * 119.93458 * 359.97438 * 14 13 12 16 16 C 1.38107 * 119.93364 * 0.28615 * 15 14 13 17 17 C 1.38213 * 109.76209 * 258.26770 * 12 10 9 18 18 C 1.51372 * 109.75568 * 359.97438 * 17 12 10 19 19 C 1.54340 * 105.17317 * 342.81484 * 18 17 12 20 20 H 1.08999 * 110.82043 * 144.56991 * 19 18 17 21 21 N 1.46501 * 110.99127 * 268.04262 * 19 18 17 22 22 C 1.34778 * 119.99909 * 268.06754 * 21 19 18 23 23 O 1.21279 * 119.99994 * 359.97438 * 22 21 19 24 24 C 1.50695 * 120.00057 * 180.02562 * 22 21 19 25 25 C 1.52998 * 109.47354 * 180.02562 * 24 22 21 26 26 N 1.46501 * 109.47206 * 179.97438 * 25 24 22 27 27 C 1.36883 * 126.39893 * 269.71219 * 26 25 24 28 28 C 1.34672 * 106.81700 * 179.84320 * 27 26 25 29 29 N 1.34130 * 108.01702 * 0.42156 * 28 27 26 30 30 C 1.30500 * 109.26058 * 359.73040 * 29 28 27 31 31 H 0.96999 * 119.99604 * 0.02562 * 1 2 3 32 32 H 0.96995 * 119.99682 * 359.97438 * 9 7 2 33 33 H 1.07995 * 119.89092 * 0.05292 * 13 12 10 34 34 H 1.08003 * 120.03622 * 179.97438 * 14 13 12 35 35 H 1.08002 * 120.03017 * 180.02562 * 15 14 13 36 36 H 1.07996 * 119.88894 * 179.72263 * 16 15 14 37 37 H 1.09000 * 110.30223 * 223.88784 * 18 17 12 38 38 H 1.09003 * 110.38197 * 101.78189 * 18 17 12 39 39 H 0.96997 * 119.99911 * 88.07085 * 21 19 18 40 40 H 1.09000 * 109.47060 * 300.00006 * 24 22 21 41 41 H 1.09001 * 109.47408 * 59.99422 * 24 22 21 42 42 H 1.09000 * 109.47016 * 300.00002 * 25 24 22 43 43 H 1.08993 * 109.47030 * 59.99348 * 25 24 22 44 44 H 1.07998 * 126.58966 * 359.97438 * 27 26 25 45 45 H 1.07995 * 125.99033 * 180.12311 * 28 27 26 46 46 H 1.08001 * 125.64835 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 1 2.9667 -3.5682 0.5961 12 6 2.3967 -4.0678 -1.4164 13 6 3.3933 -3.6192 -2.2671 14 6 3.5131 -4.1480 -3.5372 15 6 2.6360 -5.1289 -3.9616 16 6 1.6382 -5.5737 -3.1167 17 6 1.5195 -5.0479 -1.8409 18 6 0.5317 -5.3631 -0.7381 19 6 1.1657 -4.7913 0.5477 20 1 0.3997 -4.3944 1.2139 21 7 1.9724 -5.8055 1.2309 22 6 1.4160 -6.5798 2.1834 23 8 0.2476 -6.4366 2.4753 24 6 2.2460 -7.6227 2.8866 25 6 1.3804 -8.3566 3.9128 26 7 2.1872 -9.3709 4.5959 27 6 2.3489 -10.6746 4.2113 28 6 3.1674 -11.2484 5.1138 29 7 3.4890 -10.3228 6.0297 30 6 2.9055 -9.1957 5.7260 31 1 -0.4849 0.8401 -0.0004 32 1 0.3556 -2.3880 0.0005 33 1 4.0793 -2.8536 -1.9360 34 1 4.2911 -3.7957 -4.1983 35 1 2.7285 -5.5438 -4.9544 36 1 0.9507 -6.3367 -3.4506 37 1 0.3980 -6.4410 -0.6468 38 1 -0.4249 -4.8793 -0.9356 39 1 2.9070 -5.9197 0.9977 40 1 2.6273 -8.3366 2.1565 41 1 3.0817 -7.1406 3.3940 42 1 0.9988 -7.6430 4.6430 43 1 0.5451 -8.8387 3.4050 44 1 1.9069 -11.1508 3.3487 45 1 3.5019 -12.2752 5.1046 46 1 2.9838 -8.2755 6.2859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725031991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = 68.838433 kcal Electronic energy + Delta-G solvation = -28401.649178 eV Core-core repulsion = 24485.440554 eV Total energy + Delta-G solvation = -3916.208624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.25899 -40.41034 -39.22097 -36.33951 -35.00800 -34.12562 -32.75105 -31.23402 -30.79986 -29.83376 -29.60036 -27.91278 -26.20142 -24.95730 -23.26010 -22.17473 -21.55871 -21.19308 -20.77361 -20.24384 -20.05993 -18.01615 -17.55025 -16.69791 -16.28790 -15.95817 -15.83931 -15.31437 -14.88546 -14.69314 -14.56864 -14.41792 -14.17672 -13.94162 -13.58431 -13.55146 -13.25937 -13.07398 -12.97109 -12.90367 -12.74458 -12.70702 -11.78307 -11.64875 -11.44995 -11.16652 -11.08471 -10.88292 -10.70020 -10.46864 -10.25043 -10.22695 -10.14166 -9.92340 -9.78184 -9.15828 -9.01889 -8.76410 -8.41104 -8.17770 -7.17124 -5.90853 -3.21652 1.74768 1.79591 1.80696 2.41357 2.48864 2.96066 3.17436 3.35647 3.40591 3.41445 4.14377 4.30244 4.32486 4.47952 4.50457 4.52575 4.67655 4.78643 4.95677 4.99039 5.05178 5.22425 5.26788 5.35201 5.38027 5.41723 5.43182 5.47047 5.51745 5.65322 5.82343 5.90481 6.01011 6.02474 6.09455 6.15382 6.26514 6.40487 6.49322 6.51881 6.65039 6.81467 6.89632 6.91948 7.14285 7.39686 7.44024 7.55640 7.84500 8.11107 8.25093 9.37200 9.87567 10.23012 11.30718 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011006 B = 0.002646 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.382996 B =10577.520600 C =12129.709557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.703 5.703 10 C 0.208 3.792 11 H 0.062 0.938 12 C -0.094 4.094 13 C -0.090 4.090 14 C -0.127 4.127 15 C -0.132 4.132 16 C -0.114 4.114 17 C -0.098 4.098 18 C -0.085 4.085 19 C 0.135 3.865 20 H 0.111 0.889 21 N -0.709 5.709 22 C 0.519 3.481 23 O -0.540 6.540 24 C -0.157 4.157 25 C 0.120 3.880 26 N -0.458 5.458 27 C -0.057 4.057 28 C -0.033 4.033 29 N -0.498 5.498 30 C 0.182 3.818 31 H 0.258 0.742 32 H 0.388 0.612 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.401 0.599 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.173 0.827 45 H 0.168 0.832 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 -18.918 1.335 19.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.342 5.342 10 C 0.096 3.904 11 H 0.080 0.920 12 C -0.098 4.098 13 C -0.109 4.109 14 C -0.145 4.145 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.099 4.099 18 C -0.124 4.124 19 C 0.029 3.971 20 H 0.129 0.871 21 N -0.359 5.359 22 C 0.304 3.696 23 O -0.417 6.417 24 C -0.198 4.198 25 C -0.003 4.003 26 N -0.141 5.141 27 C -0.189 4.189 28 C -0.181 4.181 29 N -0.216 5.216 30 C -0.100 4.100 31 H 0.068 0.932 32 H 0.223 0.777 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.235 0.765 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.120 0.880 44 H 0.190 0.810 45 H 0.185 0.815 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.136 -18.626 2.202 19.447 hybrid contribution 0.087 1.154 -1.293 1.735 sum 5.222 -17.473 0.909 18.259 Atomic orbital electron populations 1.69648 1.05170 1.26174 1.56319 1.24771 0.95526 0.97814 1.02146 0.86254 0.78600 0.83296 0.77932 1.21122 1.21556 1.21063 1.19118 0.90966 0.83566 1.44079 0.91038 1.42259 1.05787 0.98802 1.87382 1.19833 0.94490 0.86434 0.89629 0.92023 1.21747 0.93988 0.94058 0.99975 1.20623 0.98144 0.98846 0.93286 1.20982 0.99763 0.97719 0.96058 1.20859 0.96361 0.98689 0.99103 1.20478 0.98774 1.00829 0.93169 1.20509 0.97285 0.97517 0.94602 1.21395 0.97917 1.00932 0.92108 1.21928 0.94339 0.87662 0.93146 0.87102 1.45876 1.14654 1.36760 1.38623 1.20209 0.87891 0.81885 0.79648 1.90751 1.16765 1.69443 1.64731 1.21990 0.99938 0.98336 0.99553 1.21622 0.92592 0.90107 0.95936 1.45665 1.37178 1.09811 1.21437 1.22784 1.06946 0.84944 1.04275 1.22315 1.01837 0.99907 0.94027 1.70305 1.24081 0.99842 1.27399 1.25077 0.95943 0.99822 0.89184 0.93167 0.77742 0.86550 0.86684 0.86778 0.87186 0.91166 0.89334 0.76483 0.88154 0.87935 0.87667 0.88026 0.80969 0.81486 0.77895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.98 13.06 55.49 0.72 -26.26 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.43 9.96 -15.06 -0.15 -6.58 16 8 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 9 N -0.70 -16.46 5.15 -53.53 -0.28 -16.73 16 10 C 0.21 3.77 3.12 -68.04 -0.21 3.56 16 11 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 12 C -0.09 -1.63 5.76 -104.20 -0.60 -2.23 16 13 C -0.09 -1.52 10.04 -39.54 -0.40 -1.92 16 14 C -0.13 -1.87 10.05 -39.63 -0.40 -2.27 16 15 C -0.13 -1.82 10.05 -39.62 -0.40 -2.22 16 16 C -0.11 -1.65 10.04 -39.53 -0.40 -2.05 16 17 C -0.10 -1.56 6.14 -104.21 -0.64 -2.20 16 18 C -0.09 -1.27 6.49 -26.85 -0.17 -1.44 16 19 C 0.13 2.08 3.02 -66.51 -0.20 1.88 16 20 H 0.11 1.99 7.45 -51.93 -0.39 1.60 16 21 N -0.71 -8.34 5.12 -52.43 -0.27 -8.60 16 22 C 0.52 5.88 7.83 -10.99 -0.09 5.79 16 23 O -0.54 -8.14 15.62 5.56 0.09 -8.06 16 24 C -0.16 -1.15 6.02 -27.89 -0.17 -1.32 16 25 C 0.12 0.90 5.44 -4.04 -0.02 0.88 16 26 N -0.46 -3.81 2.75 -118.58 -0.33 -4.14 16 27 C -0.06 -0.46 11.58 -16.56 -0.19 -0.66 16 28 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 29 N -0.50 -5.80 11.25 -14.66 -0.16 -5.97 16 30 C 0.18 1.70 12.56 -90.37 -1.14 0.57 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.39 9.81 7.78 -40.82 -0.32 9.49 16 33 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.12 1.42 8.06 -52.48 -0.42 0.99 16 35 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 37 H 0.07 0.94 8.09 -51.93 -0.42 0.52 16 38 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.40 3.85 8.66 -40.82 -0.35 3.50 16 40 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.11 0.80 8.10 -51.93 -0.42 0.38 16 43 H 0.10 0.77 8.10 -51.93 -0.42 0.35 16 44 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 46 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -33.19 392.50 -11.32 -44.51 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.51 Total: 13.74 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -5.48 Total: -10.98 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.31 Total: -61.70 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.19 -11.32 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725031991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.350 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds