Wall clock time and date at job start Sat Apr 11 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00297 * 2 1 4 4 H 1.48498 * 109.47193 * 274.46103 * 3 2 1 5 5 H 1.48502 * 109.47048 * 34.46037 * 3 2 1 6 6 H 1.48499 * 109.47315 * 154.45954 * 3 2 1 7 7 C 1.38817 * 119.99713 * 180.27836 * 2 1 3 8 8 H 1.07994 * 120.00333 * 353.93480 * 7 2 1 9 9 N 1.36934 * 119.99598 * 173.92936 * 7 2 1 10 10 C 1.46503 * 119.99627 * 184.81516 * 9 7 2 11 11 C 1.53005 * 109.47034 * 174.88460 * 10 9 7 12 12 N 1.46494 * 110.01714 * 53.32177 * 11 10 9 13 13 C 1.34772 * 120.00398 * 62.41903 * 12 11 10 14 14 O 1.21551 * 119.99815 * 5.02474 * 13 12 11 15 15 C 1.47924 * 120.00414 * 185.02833 * 13 12 11 16 16 C 1.38940 * 119.84427 * 179.97438 * 15 13 12 17 17 C 1.40651 * 117.38186 * 179.97438 * 16 15 13 18 18 C 1.40266 * 122.03611 * 179.97438 * 17 16 15 19 19 C 1.36268 * 119.46757 * 179.97438 * 18 17 16 20 20 C 1.39320 * 120.88179 * 0.08429 * 19 18 17 21 21 C 1.36232 * 121.15510 * 359.93237 * 20 19 18 22 22 C 1.40334 * 119.67888 * 0.02751 * 21 20 19 23 23 N 1.33818 * 121.61756 * 179.97438 * 22 21 20 24 24 N 1.28444 * 121.68819 * 179.68911 * 23 22 21 25 25 C 1.54264 * 110.02917 * 291.87870 * 11 10 9 26 26 C 1.54895 * 104.19487 * 217.10371 * 25 11 10 27 27 C 1.54890 * 102.74589 * 37.94428 * 26 25 11 28 28 C 1.53874 * 110.03091 * 174.71127 * 11 10 9 29 29 H 0.97000 * 119.99360 * 359.71793 * 1 2 3 30 30 H 0.96997 * 120.00646 * 4.81485 * 9 7 2 31 31 H 1.09007 * 109.47134 * 294.87809 * 10 9 7 32 32 H 1.08997 * 109.47614 * 54.88593 * 10 9 7 33 33 H 0.97008 * 120.00165 * 242.41721 * 12 11 10 34 34 H 1.07999 * 121.30883 * 0.02562 * 16 15 13 35 35 H 1.07989 * 120.26337 * 0.02562 * 18 17 16 36 36 H 1.08005 * 119.55647 * 180.02562 * 19 18 17 37 37 H 1.07998 * 119.42625 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.16145 * 180.02562 * 21 20 19 39 39 H 1.08993 * 110.48969 * 335.77890 * 25 11 10 40 40 H 1.08996 * 110.48430 * 98.43041 * 25 11 10 41 41 H 1.08997 * 110.76025 * 279.63103 * 26 25 11 42 42 H 1.08996 * 110.75636 * 156.25525 * 26 25 11 43 43 H 1.09000 * 110.48690 * 203.37691 * 27 26 25 44 44 H 1.09000 * 110.48622 * 80.73767 * 27 26 25 45 45 H 1.08998 * 110.03174 * 238.56638 * 28 11 10 46 46 H 1.08996 * 110.03720 * 359.97438 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4035 2.1008 -1.3958 5 1 1.4981 2.6236 0.7922 6 1 3.5918 1.4147 0.6036 7 6 2.0102 -1.2022 -0.0058 8 1 1.4748 -2.1353 0.0884 9 7 3.3738 -1.2049 -0.1313 10 6 4.0965 -2.4743 -0.2436 11 6 5.5792 -2.1962 -0.4991 12 7 6.1023 -1.2871 0.5237 13 6 6.1098 -1.6618 1.8182 14 8 5.7682 -2.7866 2.1273 15 6 6.5336 -0.7042 2.8630 16 6 6.5395 -1.0938 4.1967 17 6 6.9523 -0.1424 5.1467 18 6 6.9951 -0.4310 6.5187 19 6 7.4041 0.5304 7.3935 20 6 7.7779 1.7947 6.9432 21 6 7.7477 2.1082 5.6178 22 6 7.3331 1.1450 4.6852 23 7 7.2881 1.4112 3.3746 24 7 6.9145 0.5288 2.5193 25 6 5.7674 -1.5806 -1.9010 26 6 7.0908 -2.2010 -2.4137 27 6 7.0150 -3.6543 -1.8833 28 6 6.3724 -3.5147 -0.4878 29 1 -0.4849 0.8401 0.0041 30 1 3.8612 -0.3664 -0.1458 31 1 3.9870 -3.0380 0.6830 32 1 3.6876 -3.0533 -1.0716 33 1 6.4435 -0.4154 0.2691 34 1 6.2398 -2.0884 4.4921 35 1 6.7070 -1.4075 6.8787 36 1 7.4380 0.3096 8.4502 37 1 8.0979 2.5391 7.6572 38 1 8.0413 3.0932 5.2864 39 1 4.9389 -1.8566 -2.5532 40 1 5.8557 -0.4963 -1.8328 41 1 7.9505 -1.6803 -1.9920 42 1 7.1266 -2.1888 -3.5030 43 1 8.0137 -4.0834 -1.8023 44 1 6.3879 -4.2651 -2.5327 45 1 7.1471 -3.4778 0.2780 46 1 5.7012 -4.3527 -0.2999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732232399.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:10 Heat of formation + Delta-G solvation = 57.533434 kcal Electronic energy + Delta-G solvation = -29639.358449 eV Core-core repulsion = 25722.659604 eV Total energy + Delta-G solvation = -3916.698845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -41.58254 -40.14296 -38.21891 -37.48115 -34.45976 -33.90812 -33.38479 -31.91445 -31.20314 -30.69530 -28.71698 -28.36194 -25.54104 -25.26053 -24.45614 -22.75505 -21.91708 -21.55741 -20.63116 -19.28540 -18.94353 -18.45043 -17.56958 -17.11707 -16.33312 -15.96521 -15.60640 -15.10019 -14.94672 -14.64879 -14.56051 -14.33442 -14.24369 -14.02809 -13.73061 -13.26333 -12.98200 -12.71177 -12.67445 -12.57662 -12.37602 -12.08290 -11.85754 -11.42550 -11.36396 -11.01219 -10.97917 -10.96894 -10.87323 -10.70967 -10.55630 -10.40054 -10.09482 -10.01489 -9.75606 -9.68087 -9.56824 -8.82007 -8.76460 -8.64905 -7.13003 -5.71424 -3.04705 -0.32846 0.14932 1.40759 2.19712 3.04109 3.20120 3.40932 3.46887 3.49227 3.69383 3.74275 4.00061 4.22567 4.28106 4.41871 4.61188 4.64807 4.67338 4.75744 4.77348 4.84699 5.01552 5.20776 5.34181 5.38697 5.42788 5.50078 5.52090 5.61493 5.62952 5.74741 5.77911 5.82563 5.87909 5.90411 5.93437 5.94307 6.03531 6.18123 6.28440 6.30923 6.42246 6.45770 6.51024 6.79779 6.96713 7.67337 8.07515 8.27231 8.39586 8.48087 9.28455 10.01043 10.22186 11.47161 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009176 B = 0.004184 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3050.741883 B = 6690.617580 C = 8484.162791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.877 3.123 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.237 4.237 8 H 0.089 0.911 9 N -0.751 5.751 10 C 0.151 3.849 11 C 0.163 3.837 12 N -0.693 5.693 13 C 0.584 3.416 14 O -0.521 6.521 15 C 0.000 4.000 16 C -0.028 4.028 17 C -0.074 4.074 18 C -0.092 4.092 19 C -0.100 4.100 20 C -0.094 4.094 21 C -0.079 4.079 22 C 0.070 3.930 23 N -0.202 5.202 24 N -0.190 5.190 25 C -0.122 4.122 26 C -0.125 4.125 27 C -0.124 4.124 28 C -0.116 4.116 29 H 0.258 0.742 30 H 0.359 0.641 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.406 0.594 34 H 0.168 0.832 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.665 -0.966 10.126 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.191 4.191 3 Si 0.707 3.293 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.367 4.367 8 H 0.107 0.893 9 N -0.397 5.397 10 C 0.023 3.977 11 C 0.077 3.923 12 N -0.343 5.343 13 C 0.367 3.633 14 O -0.397 6.397 15 C -0.134 4.134 16 C -0.058 4.058 17 C -0.083 4.083 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.100 4.100 22 C -0.057 4.057 23 N -0.058 5.058 24 N -0.047 5.047 25 C -0.159 4.159 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.155 4.155 29 H 0.068 0.932 30 H 0.192 0.808 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.242 0.758 34 H 0.185 0.815 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 21.361 -0.884 9.118 23.243 hybrid contribution 0.273 0.842 1.184 1.478 sum 21.634 -0.042 10.302 23.962 Atomic orbital electron populations 1.69720 1.05055 1.25608 1.57900 1.24624 0.95148 0.97007 1.02313 0.86615 0.79526 0.85326 0.77792 1.21022 1.21880 1.20187 1.19053 0.81099 0.94763 1.41793 0.89311 1.42615 1.04636 1.02194 1.90247 1.21121 0.87176 0.89735 0.99665 1.21438 0.94745 0.89318 0.86750 1.45939 1.62266 1.20419 1.05711 1.17298 0.77950 0.85901 0.82155 1.90783 1.47776 1.19390 1.81707 1.22673 1.01692 0.94359 0.94644 1.22607 0.91083 1.00623 0.91531 1.18825 0.99782 0.94100 0.95552 1.21062 0.98681 1.00611 0.90747 1.21116 0.97238 0.93080 1.00500 1.21095 0.97747 0.96965 0.95603 1.20807 0.98383 0.99012 0.91838 1.20454 0.98221 0.93331 0.93716 1.73865 1.09341 1.23181 0.99427 1.73196 1.04213 0.98789 1.28542 1.22645 0.98374 1.00249 0.94671 1.22532 0.97492 0.95954 1.00271 1.22394 1.00338 0.96862 0.96621 1.22411 0.99383 0.96817 0.96866 0.93217 0.80774 0.94155 0.94208 0.75809 0.81481 0.84093 0.84643 0.84490 0.83724 0.89121 0.91102 0.91729 0.91448 0.91969 0.91390 0.91271 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.24 13.97 55.49 0.78 -29.46 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 3 Si 0.88 23.15 27.77 -169.99 -4.72 18.43 16 4 H -0.28 -7.33 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.85 7.11 56.52 0.40 -7.44 16 6 H -0.28 -7.02 6.49 56.52 0.37 -6.66 16 7 C -0.24 -6.98 10.47 -15.06 -0.16 -7.13 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.75 -18.56 5.10 -59.90 -0.31 -18.86 16 10 C 0.15 3.13 4.59 -4.04 -0.02 3.11 16 11 C 0.16 2.65 0.58 -130.70 -0.08 2.57 16 12 N -0.69 -11.43 4.39 -47.48 -0.21 -11.63 16 13 C 0.58 10.23 6.95 -12.30 -0.09 10.14 16 14 O -0.52 -9.94 13.58 5.32 0.07 -9.87 16 15 C 0.00 0.00 6.82 -82.89 -0.57 -0.56 16 16 C -0.03 -0.38 9.51 -38.41 -0.37 -0.75 16 17 C -0.07 -0.90 5.75 -106.80 -0.61 -1.51 16 18 C -0.09 -0.79 9.81 -39.53 -0.39 -1.18 16 19 C -0.10 -0.67 9.96 -39.89 -0.40 -1.07 16 20 C -0.09 -0.65 9.94 -39.90 -0.40 -1.04 16 21 C -0.08 -0.75 10.00 -39.52 -0.40 -1.15 16 22 C 0.07 0.91 6.69 -84.79 -0.57 0.35 16 23 N -0.20 -3.14 11.55 32.23 0.37 -2.77 16 24 N -0.19 -3.15 10.70 33.24 0.36 -2.79 16 25 C -0.12 -1.73 5.82 -25.07 -0.15 -1.88 16 26 C -0.12 -1.41 6.91 -24.73 -0.17 -1.59 16 27 C -0.12 -1.42 6.83 -25.07 -0.17 -1.59 16 28 C -0.12 -1.64 5.17 -25.61 -0.13 -1.77 16 29 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 30 H 0.36 8.72 5.04 -40.82 -0.21 8.52 16 31 H 0.04 0.92 6.75 -51.93 -0.35 0.57 16 32 H 0.04 0.82 8.00 -51.93 -0.42 0.41 16 33 H 0.41 6.27 7.58 -40.82 -0.31 5.96 16 34 H 0.17 1.98 7.69 -52.49 -0.40 1.58 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 37 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 38 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.09 1.37 7.75 -51.93 -0.40 0.97 16 40 H 0.07 1.01 7.71 -51.93 -0.40 0.60 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 1.01 6.96 -51.93 -0.36 0.65 16 46 H 0.08 1.12 7.67 -51.93 -0.40 0.72 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -36.00 375.36 -8.97 -44.96 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.22 Total: 11.34 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -4.74 Total: -5.01 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: 0.99 Total: -65.52 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.07 Total: -9.87 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -4.72 Total: 18.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.00 -8.97 -44.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732232399.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.497 kcal (2) G-P(sol) polarization free energy of solvation -35.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds