Wall clock time and date at job start Sat Apr 11 2020 06:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99377 * 2 1 4 4 H 1.48501 * 109.47227 * 269.99704 * 3 2 1 5 5 H 1.48496 * 109.47434 * 30.00136 * 3 2 1 6 6 H 1.48507 * 109.46769 * 150.00238 * 3 2 1 7 7 C 1.38805 * 120.00455 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00292 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99849 * 359.97438 * 7 2 1 10 10 C 1.46506 * 120.00073 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47237 * 179.72302 * 10 9 7 12 12 H 1.09000 * 109.46751 * 64.99774 * 11 10 9 13 13 N 1.46496 * 109.47078 * 304.99765 * 11 10 9 14 14 C 1.34785 * 119.99543 * 154.99826 * 13 11 10 15 15 O 1.21688 * 120.00302 * 359.97438 * 14 13 11 16 16 C 1.46656 * 119.99697 * 180.02562 * 14 13 11 17 17 C 1.37829 * 126.82129 * 179.68680 * 16 14 13 18 18 N 1.32974 * 107.99312 * 179.82799 * 17 16 14 19 19 C 1.31799 * 109.77238 * 0.44582 * 18 17 16 20 20 C 1.47823 * 125.51013 * 179.68704 * 19 18 17 21 21 C 1.39579 * 120.14696 * 179.76865 * 20 19 18 22 22 C 1.37957 * 119.84938 * 179.74025 * 21 20 19 23 23 C 1.38354 * 120.14806 * 0.51010 * 22 21 20 24 24 C 1.38367 * 120.29410 * 359.76376 * 23 22 21 25 25 C 1.37958 * 120.14466 * 359.97438 * 24 23 22 26 26 N 1.35908 * 108.98253 * 359.72077 * 19 18 17 27 27 H 0.97002 * 126.54936 * 179.97438 * 26 19 18 28 28 C 1.52994 * 109.47095 * 184.99775 * 11 10 9 29 29 C 1.53011 * 117.50014 * 248.74736 * 28 11 10 30 30 C 1.53002 * 117.49791 * 180.08845 * 28 11 10 31 31 H 0.97000 * 120.00679 * 359.97438 * 1 2 3 32 32 H 0.97005 * 120.00057 * 359.72558 * 9 7 2 33 33 H 1.09001 * 109.46512 * 299.72672 * 10 9 7 34 34 H 1.08998 * 109.47174 * 59.71793 * 10 9 7 35 35 H 0.96996 * 120.00496 * 335.00043 * 13 11 10 36 36 H 1.07995 * 126.00630 * 0.02562 * 17 16 14 37 37 H 1.08002 * 120.07711 * 359.97039 * 21 20 19 38 38 H 1.08004 * 119.92620 * 180.27022 * 22 21 20 39 39 H 1.07997 * 119.85760 * 179.74050 * 23 22 21 40 40 H 1.07992 * 119.92775 * 180.02562 * 24 23 22 41 41 H 1.07996 * 120.07357 * 180.02562 * 25 24 23 42 42 H 1.09001 * 115.55265 * 34.41319 * 28 11 10 43 43 H 1.09000 * 117.49671 * 0.02562 * 29 28 11 44 44 H 1.08997 * 117.49621 * 145.02119 * 29 28 11 45 45 H 1.09003 * 117.49834 * 214.97943 * 30 28 11 46 46 H 1.09000 * 117.50079 * 359.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0005 11 6 1.0641 -4.8197 0.0064 12 1 0.4940 -4.8158 -0.9226 13 7 0.1495 -4.6734 1.1414 14 6 -1.0752 -5.2345 1.0964 15 8 -1.4213 -5.8621 0.1130 16 6 -1.9912 -5.0875 2.2323 17 6 -3.2691 -5.5939 2.3339 18 7 -3.7573 -5.2418 3.5196 19 6 -2.8634 -4.5300 4.1764 20 6 -3.0464 -3.9559 5.5262 21 6 -2.0192 -3.2215 6.1208 22 6 -2.1985 -2.6839 7.3786 23 6 -3.3894 -2.8803 8.0548 24 6 -4.4097 -3.6122 7.4735 25 6 -4.2454 -4.1507 6.2141 26 7 -1.7465 -4.4085 3.4117 27 1 -0.9333 -3.9355 3.6480 28 6 1.8256 -6.1408 0.1321 29 6 1.8300 -7.0719 -1.0820 30 6 1.0031 -7.4307 0.1552 31 1 -0.4851 0.8400 0.0004 32 1 0.3557 -2.3881 0.0039 33 1 2.6812 -3.7165 -0.8930 34 1 2.6887 -3.7123 0.8869 35 1 0.4251 -4.1728 1.9251 36 1 -3.7824 -6.1770 1.5837 37 1 -1.0873 -3.0712 5.5958 38 1 -1.4061 -2.1116 7.8380 39 1 -3.5232 -2.4609 9.0410 40 1 -5.3369 -3.7615 8.0066 41 1 -5.0426 -4.7214 5.7613 42 1 2.7269 -6.1075 0.7441 43 1 1.2909 -6.7431 -1.9704 44 1 2.7342 -7.6514 -1.2684 45 1 1.3636 -8.2463 0.7822 46 1 -0.0804 -7.3382 0.0813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733186810.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:21 Heat of formation + Delta-G solvation = 82.664480 kcal Electronic energy + Delta-G solvation = -28624.685806 eV Core-core repulsion = 24709.076724 eV Total energy + Delta-G solvation = -3915.609082 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.12903 -39.69573 -39.03316 -37.14089 -35.11695 -33.71017 -32.78280 -32.31222 -31.22082 -31.02528 -29.00816 -27.86710 -24.42319 -23.90041 -23.09504 -22.35626 -22.06026 -21.59036 -21.02389 -20.19604 -20.11036 -18.90085 -17.34286 -16.98458 -16.26358 -15.99504 -15.65364 -15.42781 -15.05120 -14.96346 -14.76089 -14.42079 -14.01615 -13.80963 -13.68416 -13.55905 -13.46375 -13.22839 -12.98237 -12.87009 -12.23260 -11.77576 -11.66424 -11.36340 -11.29060 -11.13528 -10.97608 -10.88929 -10.45213 -10.30112 -10.25890 -10.21438 -10.02415 -9.82302 -9.71724 -9.70665 -9.21831 -9.00912 -8.81764 -8.07753 -7.06391 -5.86658 -3.17590 0.53919 1.14788 1.57087 2.67415 2.82505 3.21426 3.36285 3.41584 3.42808 3.43322 3.68468 4.00953 4.09490 4.47583 4.55050 4.69015 4.81143 4.82458 4.88236 5.02008 5.11331 5.16867 5.22270 5.24218 5.35025 5.42694 5.47033 5.53738 5.65834 5.72622 5.80160 5.80936 5.83499 6.01827 6.14277 6.14562 6.19057 6.23847 6.29734 6.35964 6.46354 6.51814 6.56169 6.65364 6.79284 7.04566 7.59437 7.60157 7.82322 8.29839 8.31275 9.42472 9.96905 10.32288 11.35237 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007187 B = 0.003717 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3895.190423 B = 7530.859175 C =10478.727572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.148 3.852 11 C 0.170 3.830 12 H 0.092 0.908 13 N -0.704 5.704 14 C 0.598 3.402 15 O -0.528 6.528 16 C -0.069 4.069 17 C 0.068 3.932 18 N -0.479 5.479 19 C 0.269 3.731 20 C -0.018 4.018 21 C -0.106 4.106 22 C -0.116 4.116 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.075 4.075 26 N -0.541 5.541 27 H 0.424 0.576 28 C -0.165 4.165 29 C -0.169 4.169 30 C -0.185 4.185 31 H 0.256 0.744 32 H 0.385 0.615 33 H 0.038 0.962 34 H 0.024 0.976 35 H 0.397 0.603 36 H 0.187 0.813 37 H 0.121 0.879 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.083 0.917 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 -11.779 13.848 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.377 5.377 10 C 0.020 3.980 11 C 0.065 3.935 12 H 0.110 0.890 13 N -0.353 5.353 14 C 0.384 3.616 15 O -0.405 6.405 16 C -0.186 4.186 17 C -0.088 4.088 18 N -0.198 5.198 19 C 0.010 3.990 20 C -0.020 4.020 21 C -0.126 4.126 22 C -0.134 4.134 23 C -0.129 4.129 24 C -0.139 4.139 25 C -0.095 4.095 26 N -0.146 5.146 27 H 0.264 0.736 28 C -0.185 4.185 29 C -0.206 4.206 30 C -0.222 4.222 31 H 0.066 0.934 32 H 0.219 0.781 33 H 0.056 0.944 34 H 0.042 0.958 35 H 0.231 0.769 36 H 0.204 0.796 37 H 0.139 0.861 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.121 0.879 43 H 0.114 0.886 44 H 0.109 0.891 45 H 0.102 0.898 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.566 -12.312 13.349 18.725 hybrid contribution 1.676 1.788 0.106 2.453 sum -2.889 -10.525 13.455 17.325 Atomic orbital electron populations 1.69665 1.05113 1.25822 1.57173 1.24753 0.95490 0.97730 1.02649 0.86200 0.78599 0.83747 0.77659 1.21591 1.21762 1.20737 1.19201 0.91040 0.83979 1.43452 0.91089 1.42359 1.05953 0.99731 1.89692 1.20932 0.92979 0.85021 0.99115 1.20862 0.90137 0.92983 0.89482 0.89019 1.45857 1.14513 1.54071 1.20886 1.16720 0.80732 0.79163 0.84959 1.90764 1.75815 1.41974 1.31981 1.21603 0.99872 1.07749 0.89371 1.22850 0.90627 1.00449 0.94831 1.70248 1.28796 1.14671 1.06074 1.21303 0.83691 1.00385 0.93629 1.17636 0.95768 0.99504 0.89104 1.21143 0.98088 0.97406 0.95958 1.21038 0.98007 0.99811 0.94530 1.21316 0.93465 0.98140 0.99993 1.21146 0.99352 0.98108 0.95253 1.21234 0.96247 0.98010 0.93982 1.43409 1.16066 1.40965 1.14115 0.73595 1.22644 1.01487 0.91342 1.03037 1.22902 1.02081 1.02923 0.92743 1.23275 1.00733 0.97354 1.00803 0.93400 0.78060 0.94416 0.95799 0.76885 0.79577 0.86077 0.85369 0.85715 0.85368 0.84376 0.87889 0.88620 0.89148 0.89844 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.57 9.99 -15.06 -0.15 -6.72 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 N -0.73 -17.49 5.43 -59.91 -0.33 -17.82 16 10 C 0.15 2.76 5.80 -4.04 -0.02 2.74 16 11 C 0.17 2.75 2.43 -67.94 -0.17 2.59 16 12 H 0.09 1.70 7.33 -51.93 -0.38 1.32 16 13 N -0.70 -10.86 4.49 -55.13 -0.25 -11.11 16 14 C 0.60 9.72 7.12 -12.86 -0.09 9.63 16 15 O -0.53 -9.68 13.93 5.20 0.07 -9.61 16 16 C -0.07 -1.02 7.11 -81.71 -0.58 -1.60 16 17 C 0.07 1.00 11.69 -17.21 -0.20 0.80 16 18 N -0.48 -7.07 10.79 -10.76 -0.12 -7.19 16 19 C 0.27 3.65 7.74 -154.88 -1.20 2.45 16 20 C -0.02 -0.21 5.87 -104.97 -0.62 -0.83 16 21 C -0.11 -1.08 9.69 -39.18 -0.38 -1.46 16 22 C -0.12 -1.01 10.03 -39.64 -0.40 -1.41 16 23 C -0.11 -0.88 10.04 -39.49 -0.40 -1.28 16 24 C -0.12 -1.02 10.03 -39.64 -0.40 -1.42 16 25 C -0.07 -0.79 9.69 -39.18 -0.38 -1.17 16 26 N -0.54 -7.00 5.99 -7.13 -0.04 -7.04 16 27 H 0.42 4.58 7.40 -40.82 -0.30 4.28 16 28 C -0.17 -2.26 5.36 -90.62 -0.49 -2.74 16 29 C -0.17 -2.15 10.18 -26.68 -0.27 -2.42 16 30 C -0.18 -2.48 9.74 -26.69 -0.26 -2.74 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.39 9.91 7.33 -40.82 -0.30 9.61 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.40 5.71 7.84 -40.82 -0.32 5.39 16 36 H 0.19 2.43 8.06 -52.49 -0.42 2.00 16 37 H 0.12 1.07 7.14 -52.49 -0.37 0.69 16 38 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 39 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.14 1.42 7.82 -52.49 -0.41 1.01 16 42 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 43 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 44 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.12 1.83 5.02 -51.93 -0.26 1.57 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -32.28 389.58 -11.30 -43.57 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -6.12 Total: 19.21 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -6.09 Total: -5.95 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -0.01 Total: -69.85 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.07 Total: -9.61 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.28 -11.30 -43.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733186810.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.237 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds