Wall clock time and date at job start Sat Apr 11 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47263 * 300.00007 * 3 2 1 6 6 H 1.48508 * 109.47062 * 59.99818 * 3 2 1 7 7 C 1.39940 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99476 * 162.59681 * 7 2 1 9 9 C 1.41437 * 120.00183 * 342.60620 * 7 2 1 10 10 C 1.40786 * 120.17675 * 154.91237 * 9 7 2 11 11 C 1.37706 * 120.04103 * 179.97438 * 10 9 7 12 12 C 1.38379 * 120.41073 * 359.78399 * 11 10 9 13 13 C 1.39880 * 120.35422 * 0.47130 * 12 11 10 14 14 C 1.47885 * 120.02359 * 179.78535 * 13 12 11 15 15 O 1.21550 * 120.00388 * 179.72513 * 14 13 12 16 16 N 1.34777 * 120.00056 * 359.72434 * 14 13 12 17 17 C 1.46501 * 120.00165 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.46871 * 180.02562 * 17 16 14 19 19 N 1.30683 * 126.43145 * 89.97224 * 18 17 16 20 20 N 1.28758 * 109.69781 * 179.65091 * 19 18 17 21 21 C 1.30243 * 109.54505 * 359.71966 * 20 19 18 22 22 N 1.35103 * 126.42071 * 270.00900 * 18 17 16 23 23 C 1.46318 * 127.26679 * 1.26827 * 22 18 17 24 24 C 1.53122 * 109.40913 * 207.60277 * 23 22 18 25 25 C 1.52795 * 109.68301 * 270.75536 * 24 23 22 26 26 C 1.52560 * 110.51634 * 61.40732 * 25 24 23 27 27 C 1.50667 * 127.21517 * 180.98744 * 21 20 19 28 28 C 1.39029 * 119.95134 * 359.50931 * 13 12 11 29 29 H 0.97004 * 120.00364 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.97645 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.79548 * 180.02562 * 11 10 9 32 32 H 1.07995 * 119.82226 * 180.23364 * 12 11 10 33 33 H 0.97000 * 119.99787 * 359.97438 * 16 14 13 34 34 H 1.08997 * 109.47384 * 59.99720 * 17 16 14 35 35 H 1.09001 * 109.46710 * 299.99537 * 17 16 14 36 36 H 1.09004 * 109.48125 * 87.61838 * 23 22 18 37 37 H 1.09000 * 109.48551 * 327.58498 * 23 22 18 38 38 H 1.09000 * 109.43356 * 30.81609 * 24 23 22 39 39 H 1.09000 * 109.43546 * 150.68494 * 24 23 22 40 40 H 1.09004 * 109.27078 * 181.67655 * 25 24 23 41 41 H 1.09000 * 109.27083 * 301.14262 * 25 24 23 42 42 H 1.09002 * 109.45771 * 153.45705 * 26 25 24 43 43 H 1.08994 * 109.46064 * 273.40708 * 26 25 24 44 44 H 1.09000 * 109.53738 * 106.97547 * 27 21 20 45 45 H 1.09003 * 109.59594 * 346.78133 * 27 21 20 46 46 H 1.08004 * 120.20009 * 180.22808 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0508 -1.2334 -0.2792 9 6 1.3492 -2.4087 0.3672 10 6 1.8188 -3.6486 -0.1062 11 6 1.1756 -4.8121 0.2530 12 6 0.0690 -4.7732 1.0829 13 6 -0.4151 -3.5501 1.5588 14 6 -1.6011 -3.5167 2.4415 15 8 -2.0184 -2.4542 2.8589 16 7 -2.2193 -4.6646 2.7833 17 6 -3.3946 -4.6315 3.6573 18 6 -3.8916 -6.0360 3.8841 19 7 -3.5233 -6.8443 4.8427 20 7 -4.1554 -7.9609 4.7358 21 6 -4.9569 -7.9113 3.7103 22 7 -4.8010 -6.6960 3.1340 23 6 -5.4796 -6.2091 1.9326 24 6 -6.8391 -6.9011 1.8004 25 6 -6.6828 -8.1943 1.0016 26 6 -5.7409 -9.1558 1.7197 27 6 -5.8956 -8.9895 3.2345 28 6 0.2231 -2.3664 1.2059 29 1 -0.4851 0.8400 -0.0004 30 1 2.6845 -3.6873 -0.7509 31 1 1.5395 -5.7611 -0.1121 32 1 -0.4258 -5.6917 1.3617 33 1 -1.8865 -5.5125 2.4500 34 1 -4.1799 -4.0391 3.1879 35 1 -3.1238 -4.1835 4.6134 36 1 -4.8713 -6.4321 1.0560 37 1 -5.6260 -5.1317 2.0091 38 1 -7.2264 -7.1324 2.7926 39 1 -7.5348 -6.2385 1.2855 40 1 -7.6587 -8.6659 0.8860 41 1 -6.2774 -7.9620 0.0168 42 1 -5.9857 -10.1805 1.4401 43 1 -4.7120 -8.9376 1.4338 44 1 -6.9225 -8.7076 3.4673 45 1 -5.6543 -9.9295 3.7309 46 1 -0.1451 -1.4201 1.5740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042395100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:01 Heat of formation + Delta-G solvation = 52.884786 kcal Electronic energy + Delta-G solvation = -28757.730801 eV Core-core repulsion = 24840.830375 eV Total energy + Delta-G solvation = -3916.900426 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.53033 -39.27990 -38.18657 -37.10569 -35.19610 -34.07053 -33.71074 -32.08036 -30.86361 -29.87256 -29.47515 -27.30736 -26.31474 -25.29928 -24.98536 -22.54045 -21.39999 -20.97187 -20.79938 -20.48953 -19.68843 -17.95096 -17.22938 -16.80005 -16.32111 -15.78867 -15.53880 -15.42433 -15.07794 -14.96840 -14.72473 -14.40657 -13.93193 -13.75277 -13.47465 -13.30245 -13.19084 -12.79987 -12.69090 -12.54257 -12.49516 -12.24565 -11.77923 -11.68135 -11.48441 -11.37734 -11.20324 -11.12178 -11.10153 -10.77657 -10.52532 -10.42853 -10.32021 -10.09566 -9.73151 -9.45597 -9.25696 -9.00872 -8.87398 -7.68536 -7.56086 -6.83881 -4.45032 1.49526 2.13283 2.19297 2.62345 2.77089 3.06236 3.10779 3.12428 3.64757 3.77468 3.86418 3.89705 3.98619 4.07334 4.12071 4.28037 4.55289 4.58728 4.62451 4.66285 4.81585 5.01391 5.11810 5.15909 5.24575 5.28705 5.44507 5.49109 5.55902 5.60970 5.67320 5.71803 5.75384 5.79344 5.95508 6.03720 6.22468 6.58172 6.63419 6.67192 6.93910 6.96458 7.16887 7.33376 7.63750 7.69222 7.86109 7.98444 8.13441 8.46349 8.56841 8.75518 8.78348 8.82122 10.11069 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002389 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.036339 B =11717.147047 C =11836.912033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.209 4.209 11 C -0.097 4.097 12 C -0.217 4.217 13 C -0.127 4.127 14 C 0.569 3.431 15 O -0.542 6.542 16 N -0.734 5.734 17 C 0.213 3.787 18 C 0.161 3.839 19 N -0.275 5.275 20 N -0.293 5.293 21 C 0.180 3.820 22 N -0.458 5.458 23 C 0.099 3.901 24 C -0.140 4.140 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.035 4.035 28 C -0.090 4.090 29 H 0.284 0.716 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.401 0.599 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 -13.756 0.406 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.229 4.229 11 C -0.115 4.115 12 C -0.237 4.237 13 C -0.131 4.131 14 C 0.360 3.640 15 O -0.419 6.419 16 N -0.390 5.390 17 C 0.087 3.913 18 C -0.107 4.107 19 N -0.116 5.116 20 N -0.134 5.134 21 C -0.087 4.087 22 N -0.150 5.150 23 C -0.024 4.024 24 C -0.177 4.177 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.075 4.075 28 C -0.110 4.110 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.237 0.763 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.119 0.881 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.297 -13.311 1.908 20.367 hybrid contribution -0.191 0.768 -1.366 1.579 sum -15.488 -12.542 0.542 19.937 Atomic orbital electron populations 1.69788 1.07585 1.29682 1.33806 1.25965 0.94788 1.01578 0.92253 0.86232 0.80915 0.80769 0.78693 1.18316 1.19920 1.19516 1.19624 0.98093 0.90957 1.40079 0.89994 1.17606 0.91181 0.92493 0.89129 1.21118 1.03412 0.92793 1.05621 1.20432 0.96024 0.96768 0.98311 1.20322 1.01541 0.94520 1.07320 1.19392 0.96484 0.95384 1.01810 1.18854 0.83149 0.82354 0.79622 1.90714 1.66189 1.29900 1.55116 1.45949 1.30654 1.10442 1.51934 1.19362 0.88886 0.85795 0.97306 1.24682 0.94863 0.98588 0.92530 1.74428 1.20209 0.97667 1.19283 1.74258 1.07700 1.15445 1.15960 1.24700 1.01901 0.87815 0.94313 1.46094 1.32705 1.12990 1.23169 1.22133 0.94250 1.00643 0.85329 1.22023 0.95380 0.97770 1.02537 1.21614 1.00502 0.94904 0.99242 1.21631 1.00659 1.00666 0.93369 1.20214 0.96260 0.94808 0.96189 1.21628 0.96383 0.96342 0.96643 0.90495 0.88544 0.88897 0.89477 0.76284 0.89943 0.88094 0.88735 0.88215 0.90099 0.89166 0.90841 0.90978 0.90049 0.91445 0.88964 0.88138 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.35 10.97 55.55 0.61 -19.74 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.54 29.59 -169.99 -5.03 13.51 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.46 -11.89 9.05 -37.73 -0.34 -12.23 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.10 2.57 5.57 -106.87 -0.59 1.97 16 10 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 11 C -0.10 -2.06 10.01 -39.72 -0.40 -2.46 16 12 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 13 C -0.13 -2.96 5.87 -105.04 -0.62 -3.57 16 14 C 0.57 12.07 7.77 -12.31 -0.10 11.97 16 15 O -0.54 -13.02 16.33 5.32 0.09 -12.93 16 16 N -0.73 -12.10 5.50 -62.41 -0.34 -12.44 16 17 C 0.21 3.01 6.02 -5.19 -0.03 2.98 16 18 C 0.16 2.19 7.41 -155.21 -1.15 1.04 16 19 N -0.27 -4.46 12.22 32.75 0.40 -4.06 16 20 N -0.29 -4.41 12.22 32.73 0.40 -4.01 16 21 C 0.18 2.02 6.93 -155.31 -1.08 0.95 16 22 N -0.46 -4.95 3.06 -110.89 -0.34 -5.29 16 23 C 0.10 0.75 6.27 -4.08 -0.03 0.72 16 24 C -0.14 -0.70 5.55 -26.77 -0.15 -0.85 16 25 C -0.13 -0.54 5.67 -27.06 -0.15 -0.69 16 26 C -0.12 -0.68 5.68 -26.87 -0.15 -0.83 16 27 C -0.04 -0.24 5.55 -27.81 -0.15 -0.40 16 28 C -0.09 -2.35 8.23 -38.45 -0.32 -2.67 16 29 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 30 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.09 1.55 6.38 -52.49 -0.33 1.22 16 33 H 0.40 6.20 6.48 -40.82 -0.26 5.93 16 34 H 0.08 1.06 7.30 -51.93 -0.38 0.68 16 35 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.09 0.69 7.82 -51.93 -0.41 0.29 16 37 H 0.10 0.71 7.29 -51.93 -0.38 0.34 16 38 H 0.08 0.44 5.69 -51.93 -0.30 0.15 16 39 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 44 H 0.09 0.48 6.33 -51.93 -0.33 0.16 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.13 3.79 5.77 -52.48 -0.30 3.49 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -32.01 373.27 -10.71 -42.72 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.03 Total: 9.15 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -6.09 Total: -12.53 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.73 Total: -45.54 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.01 -10.71 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042395100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.606 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds