Wall clock time and date at job start Sat Apr 11 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47263 * 300.00007 * 3 2 1 6 6 H 1.48508 * 109.47062 * 59.99818 * 3 2 1 7 7 C 1.39940 * 119.99793 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99476 * 162.59681 * 7 2 1 9 9 C 1.41437 * 120.00183 * 342.60620 * 7 2 1 10 10 C 1.40786 * 120.17675 * 154.91237 * 9 7 2 11 11 C 1.37706 * 120.04103 * 179.97438 * 10 9 7 12 12 C 1.38379 * 120.41073 * 359.78399 * 11 10 9 13 13 C 1.39880 * 120.35422 * 0.47130 * 12 11 10 14 14 C 1.47885 * 120.02359 * 179.78535 * 13 12 11 15 15 O 1.21550 * 120.00388 * 179.72513 * 14 13 12 16 16 N 1.34777 * 120.00056 * 359.72434 * 14 13 12 17 17 C 1.46501 * 120.00165 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.46871 * 180.02562 * 17 16 14 19 19 N 1.30683 * 126.43145 * 89.97224 * 18 17 16 20 20 N 1.28758 * 109.69781 * 179.65091 * 19 18 17 21 21 C 1.30243 * 109.54505 * 359.71966 * 20 19 18 22 22 N 1.35103 * 126.42071 * 270.00900 * 18 17 16 23 23 C 1.46318 * 127.26679 * 1.26827 * 22 18 17 24 24 C 1.53122 * 109.40913 * 207.60277 * 23 22 18 25 25 C 1.52795 * 109.68301 * 270.75536 * 24 23 22 26 26 C 1.52560 * 110.51634 * 61.40732 * 25 24 23 27 27 C 1.50667 * 127.21517 * 180.98744 * 21 20 19 28 28 C 1.39029 * 119.95134 * 359.50931 * 13 12 11 29 29 H 0.97004 * 120.00364 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.97645 * 0.02562 * 10 9 7 31 31 H 1.07996 * 119.79548 * 180.02562 * 11 10 9 32 32 H 1.07995 * 119.82226 * 180.23364 * 12 11 10 33 33 H 0.97000 * 119.99787 * 359.97438 * 16 14 13 34 34 H 1.08997 * 109.47384 * 59.99720 * 17 16 14 35 35 H 1.09001 * 109.46710 * 299.99537 * 17 16 14 36 36 H 1.09004 * 109.48125 * 87.61838 * 23 22 18 37 37 H 1.09000 * 109.48551 * 327.58498 * 23 22 18 38 38 H 1.09000 * 109.43356 * 30.81609 * 24 23 22 39 39 H 1.09000 * 109.43546 * 150.68494 * 24 23 22 40 40 H 1.09004 * 109.27078 * 181.67655 * 25 24 23 41 41 H 1.09000 * 109.27083 * 301.14262 * 25 24 23 42 42 H 1.09002 * 109.45771 * 153.45705 * 26 25 24 43 43 H 1.08994 * 109.46064 * 273.40708 * 26 25 24 44 44 H 1.09000 * 109.53738 * 106.97547 * 27 21 20 45 45 H 1.09003 * 109.59594 * 346.78133 * 27 21 20 46 46 H 1.08004 * 120.20009 * 180.22808 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0508 -1.2334 -0.2792 9 6 1.3492 -2.4087 0.3672 10 6 1.8188 -3.6486 -0.1062 11 6 1.1756 -4.8121 0.2530 12 6 0.0690 -4.7732 1.0829 13 6 -0.4151 -3.5501 1.5588 14 6 -1.6011 -3.5167 2.4415 15 8 -2.0184 -2.4542 2.8589 16 7 -2.2193 -4.6646 2.7833 17 6 -3.3946 -4.6315 3.6573 18 6 -3.8916 -6.0360 3.8841 19 7 -3.5233 -6.8443 4.8427 20 7 -4.1554 -7.9609 4.7358 21 6 -4.9569 -7.9113 3.7103 22 7 -4.8010 -6.6960 3.1340 23 6 -5.4796 -6.2091 1.9326 24 6 -6.8391 -6.9011 1.8004 25 6 -6.6828 -8.1943 1.0016 26 6 -5.7409 -9.1558 1.7197 27 6 -5.8956 -8.9895 3.2345 28 6 0.2231 -2.3664 1.2059 29 1 -0.4851 0.8400 -0.0004 30 1 2.6845 -3.6873 -0.7509 31 1 1.5395 -5.7611 -0.1121 32 1 -0.4258 -5.6917 1.3617 33 1 -1.8865 -5.5125 2.4500 34 1 -4.1799 -4.0391 3.1879 35 1 -3.1238 -4.1835 4.6134 36 1 -4.8713 -6.4321 1.0560 37 1 -5.6260 -5.1317 2.0091 38 1 -7.2264 -7.1324 2.7926 39 1 -7.5348 -6.2385 1.2855 40 1 -7.6587 -8.6659 0.8860 41 1 -6.2774 -7.9620 0.0168 42 1 -5.9857 -10.1805 1.4401 43 1 -4.7120 -8.9376 1.4338 44 1 -6.9225 -8.7076 3.4673 45 1 -5.6543 -9.9295 3.7309 46 1 -0.1451 -1.4201 1.5740 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042395100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:00 Heat of formation + Delta-G solvation = 34.452815 kcal Electronic energy + Delta-G solvation = -28758.530071 eV Core-core repulsion = 24840.830375 eV Total energy + Delta-G solvation = -3917.699696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.48689 -40.96254 -38.89289 -38.75993 -36.47753 -35.61798 -34.98394 -32.91431 -32.26986 -31.33840 -31.06053 -28.33680 -27.25216 -26.98254 -25.68347 -24.17366 -22.86754 -22.34795 -21.66254 -21.33291 -20.92168 -19.64064 -18.37496 -17.88813 -17.59193 -17.10284 -16.83590 -16.52970 -16.36777 -16.08387 -15.97426 -15.47746 -15.31035 -15.07069 -14.67030 -14.40665 -14.30402 -14.22798 -14.11882 -13.83127 -13.47132 -13.05848 -12.98376 -12.93875 -12.80282 -12.56429 -12.45787 -12.20004 -12.07968 -11.95549 -11.93558 -11.52711 -11.52425 -11.28594 -11.15499 -11.08794 -10.95434 -10.36165 -10.23720 -9.51118 -9.41240 -8.67581 -6.38990 0.32715 0.52254 0.98343 1.34610 1.37473 1.46137 1.53218 1.57490 2.03492 2.19404 2.26920 2.76413 2.93813 3.25559 3.47020 3.60885 3.66280 3.70801 3.87213 3.94103 4.08902 4.12786 4.25028 4.34426 4.41398 4.42238 4.53730 4.57606 4.70330 4.76935 4.83892 4.87627 4.89244 4.98563 5.07122 5.08064 5.13723 5.17111 5.19402 5.30207 5.30436 5.35756 5.49306 5.78976 5.82509 5.89338 6.03061 6.24985 6.37986 6.59875 6.87054 6.92046 7.15101 7.55720 8.29648 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.002389 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.036339 B =11717.147047 C =11836.912033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.031 3.969 3 Si 0.982 3.018 4 H -0.253 1.253 5 H -0.263 1.263 6 H -0.270 1.270 7 C -0.495 4.495 8 H 0.083 0.917 9 C 0.068 3.932 10 C -0.215 4.215 11 C -0.095 4.095 12 C -0.199 4.199 13 C -0.136 4.136 14 C 0.571 3.429 15 O -0.577 6.577 16 N -0.711 5.711 17 C 0.217 3.783 18 C 0.155 3.845 19 N -0.312 5.312 20 N -0.336 5.336 21 C 0.195 3.805 22 N -0.451 5.451 23 C 0.088 3.912 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.035 4.035 28 C -0.126 4.126 29 H 0.287 0.713 30 H 0.109 0.891 31 H 0.136 0.864 32 H 0.126 0.874 33 H 0.409 0.591 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.047 0.953 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.897 -15.993 -0.751 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.184 4.184 3 Si 0.802 3.198 4 H -0.176 1.176 5 H -0.188 1.188 6 H -0.195 1.195 7 C -0.524 4.524 8 H 0.102 0.898 9 C 0.066 3.934 10 C -0.235 4.235 11 C -0.113 4.113 12 C -0.219 4.219 13 C -0.140 4.140 14 C 0.361 3.639 15 O -0.457 6.457 16 N -0.366 5.366 17 C 0.092 3.908 18 C -0.114 4.114 19 N -0.154 5.154 20 N -0.176 5.176 21 C -0.073 4.073 22 N -0.141 5.141 23 C -0.033 4.033 24 C -0.171 4.171 25 C -0.159 4.159 26 C -0.159 4.159 27 C -0.075 4.075 28 C -0.146 4.146 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.153 0.847 32 H 0.144 0.856 33 H 0.246 0.754 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.065 0.935 44 H 0.133 0.867 45 H 0.124 0.876 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.723 -15.605 0.737 22.885 hybrid contribution 0.149 1.218 -0.997 1.581 sum -16.575 -14.388 -0.260 21.950 Atomic orbital electron populations 1.69871 1.09123 1.30622 1.35168 1.26823 0.95456 1.04836 0.91330 0.85165 0.79626 0.76187 0.78815 1.17633 1.18762 1.19539 1.19881 0.98411 0.92110 1.42039 0.89844 1.17948 0.91782 0.93876 0.89810 1.21410 1.03841 0.92787 1.05459 1.20885 0.95348 0.97711 0.97359 1.20754 1.00868 0.94909 1.05376 1.19671 0.96957 0.95461 1.01878 1.18616 0.82930 0.82947 0.79416 1.90696 1.67094 1.31479 1.56476 1.45683 1.30606 1.09245 1.51053 1.19364 0.88241 0.86714 0.96487 1.24353 0.95868 0.98110 0.93022 1.74325 1.21625 0.98613 1.20791 1.74179 1.09573 1.15573 1.18288 1.25483 1.00692 0.88359 0.92738 1.46266 1.31861 1.12528 1.23470 1.22503 0.95570 1.01252 0.83970 1.22045 0.93851 0.98369 1.02852 1.21619 1.01210 0.94201 0.98866 1.21624 0.99861 1.02245 0.92124 1.20497 0.96238 0.93502 0.97225 1.21433 0.98100 0.96321 0.98769 0.90193 0.87282 0.84662 0.85641 0.75379 0.88265 0.88990 0.88315 0.87905 0.90283 0.87301 0.88856 0.90752 0.88081 0.93455 0.86712 0.87620 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.79 10.97 21.82 0.24 -44.55 16 2 C 0.03 1.58 5.14 85.26 0.44 2.02 16 3 Si 0.98 39.12 29.59 68.60 2.03 41.15 16 4 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 5 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.50 -26.67 9.05 23.47 0.21 -26.46 16 8 H 0.08 4.26 7.90 -2.91 -0.02 4.24 16 9 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 10 C -0.22 -10.00 9.78 22.77 0.22 -9.78 16 11 C -0.10 -3.79 10.01 22.18 0.22 -3.57 16 12 C -0.20 -7.91 9.55 22.70 0.22 -7.69 16 13 C -0.14 -6.37 5.87 -20.14 -0.12 -6.49 16 14 C 0.57 24.42 7.77 86.80 0.67 25.09 16 15 O -0.58 -28.67 16.33 -3.87 -0.06 -28.73 16 16 N -0.71 -22.87 5.50 -469.66 -2.58 -25.46 16 17 C 0.22 6.07 6.02 85.63 0.52 6.58 16 18 C 0.15 4.13 7.41 138.06 1.02 5.15 16 19 N -0.31 -10.12 12.22 -50.30 -0.61 -10.74 16 20 N -0.34 -9.97 12.22 -50.37 -0.62 -10.59 16 21 C 0.20 4.10 6.93 138.08 0.96 5.05 16 22 N -0.45 -9.04 3.06 -504.75 -1.54 -10.59 16 23 C 0.09 1.12 6.27 86.45 0.54 1.67 16 24 C -0.13 -0.89 5.55 30.57 0.17 -0.72 16 25 C -0.12 -0.59 5.67 30.38 0.17 -0.41 16 26 C -0.12 -0.92 5.68 30.51 0.17 -0.75 16 27 C -0.04 -0.39 5.55 29.90 0.17 -0.22 16 28 C -0.13 -6.87 8.23 23.01 0.19 -6.68 16 29 H 0.29 14.33 8.30 -92.71 -0.77 13.56 16 30 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 31 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 32 H 0.13 3.98 6.38 -2.91 -0.02 3.96 16 33 H 0.41 11.86 6.48 -92.71 -0.60 11.26 16 34 H 0.10 2.46 7.30 -2.39 -0.02 2.45 16 35 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 36 H 0.10 1.21 7.82 -2.38 -0.02 1.19 16 37 H 0.10 1.26 7.29 -2.39 -0.02 1.24 16 38 H 0.08 0.60 5.69 -2.39 -0.01 0.58 16 39 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.07 0.38 8.09 -2.39 -0.02 0.36 16 42 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.05 0.57 7.84 -2.39 -0.02 0.55 16 44 H 0.11 0.80 6.33 -2.39 -0.02 0.78 16 45 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.10 6.19 5.77 -2.91 -0.02 6.17 16 Total: -1.00 -74.26 373.27 2.94 -71.33 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.43 Total: 31.83 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: 5.66 Total: -13.65 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -5.12 Total: -101.92 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.06 Total: -28.73 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -74.26 2.94 -71.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042395100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.780 kcal (2) G-P(sol) polarization free energy of solvation -74.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds