Wall clock time and date at job start Sat Apr 11 2020 06:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00187 * 2 1 4 4 H 1.48496 * 109.47423 * 269.99717 * 3 2 1 5 5 H 1.48498 * 109.47052 * 29.99719 * 3 2 1 6 6 H 1.48504 * 109.47335 * 149.99791 * 3 2 1 7 7 C 1.37875 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99582 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00485 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47603 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00345 * 274.84635 * 10 9 7 12 12 C 1.50701 * 109.47156 * 269.99981 * 11 10 9 13 13 C 1.38680 * 120.41307 * 269.72028 * 12 11 10 14 14 C 1.38629 * 118.41693 * 179.78060 * 13 12 11 15 15 C 1.38235 * 119.16151 * 0.51352 * 14 13 12 16 16 N 1.31854 * 120.76090 * 359.72719 * 15 14 13 17 17 C 1.31886 * 121.72845 * 359.97438 * 16 15 14 18 18 C 1.34779 * 119.99746 * 94.84200 * 10 9 7 19 19 O 1.21629 * 119.99504 * 185.73356 * 18 10 9 20 20 C 1.47162 * 120.00078 * 5.73430 * 18 10 9 21 21 N 1.36994 * 127.04415 * 251.85446 * 20 18 10 22 22 H 0.96998 * 125.15453 * 0.02562 * 21 20 18 23 23 N 1.28826 * 109.69772 * 179.97438 * 21 20 18 24 24 C 1.30110 * 110.78029 * 359.91395 * 23 21 20 25 25 C 1.37198 * 127.04136 * 71.83592 * 20 18 10 26 26 C 1.50382 * 129.91280 * 0.18419 * 25 20 18 27 27 C 1.53500 * 108.12021 * 163.69176 * 26 25 20 28 28 C 1.53025 * 109.69056 * 50.02372 * 27 26 25 29 29 C 1.50869 * 129.05769 * 180.34132 * 24 23 21 30 30 H 0.97003 * 120.00031 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46810 * 60.00072 * 9 7 2 32 32 H 1.08997 * 109.47307 * 300.00663 * 9 7 2 33 33 H 1.09004 * 109.47122 * 29.99156 * 11 10 9 34 34 H 1.08993 * 109.47412 * 149.99631 * 11 10 9 35 35 H 1.07990 * 120.79042 * 0.02562 * 13 12 11 36 36 H 1.07995 * 120.42189 * 180.21502 * 14 13 12 37 37 H 1.07998 * 119.62030 * 179.74804 * 15 14 13 38 38 H 1.07998 * 119.61533 * 180.02562 * 17 16 15 39 39 H 1.08999 * 109.73695 * 283.34768 * 26 25 20 40 40 H 1.09001 * 109.73047 * 43.98943 * 26 25 20 41 41 H 1.09005 * 109.43262 * 170.08954 * 27 26 25 42 42 H 1.09003 * 109.43590 * 289.95507 * 27 26 25 43 43 H 1.08998 * 109.40238 * 48.68302 * 28 27 26 44 44 H 1.08998 * 109.40611 * 168.43870 * 28 27 26 45 45 H 1.08998 * 109.71852 * 43.37445 * 29 24 23 46 46 H 1.09001 * 109.75068 * 282.74524 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 4.1424 -3.3009 1.2669 12 6 5.5261 -3.0777 1.8208 13 6 6.5624 -3.9371 1.4883 14 6 7.8197 -3.6903 2.0177 15 6 7.9949 -2.6098 2.8619 16 7 6.9849 -1.8163 3.1602 17 6 5.7769 -2.0173 2.6705 18 6 4.3177 -3.1786 -1.1603 19 8 4.6230 -4.3559 -1.1709 20 6 4.2956 -2.4128 -2.4168 21 7 3.3818 -2.5189 -3.4320 22 1 2.6248 -3.1253 -3.4409 23 7 3.6796 -1.6905 -4.3726 24 6 4.7477 -1.0123 -4.0693 25 6 5.1856 -1.4461 -2.8113 26 6 6.4001 -0.9074 -2.1069 27 6 7.2553 -0.1561 -3.1367 28 6 6.3792 0.8283 -3.9146 29 6 5.4489 0.0621 -4.8632 30 1 -0.4850 0.8401 -0.0004 31 1 3.8744 -0.6801 0.8912 32 1 3.8752 -0.6805 -0.8887 33 1 3.4026 -2.9370 1.9800 34 1 3.9876 -4.3658 1.0943 35 1 6.3950 -4.7762 0.8295 36 1 8.6507 -4.3368 1.7775 37 1 8.9702 -2.4131 3.2817 38 1 4.9744 -1.3456 2.9372 39 1 6.0935 -0.2245 -1.3147 40 1 6.9740 -1.7306 -1.6813 41 1 8.0458 0.3903 -2.6221 42 1 7.7006 -0.8707 -3.8289 43 1 5.7810 1.4118 -3.2147 44 1 7.0141 1.4990 -4.4933 45 1 4.7130 0.7446 -5.2883 46 1 6.0334 -0.3930 -5.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126994731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:40 Heat of formation + Delta-G solvation = 63.955514 kcal Electronic energy + Delta-G solvation = -30631.772879 eV Core-core repulsion = 26715.352516 eV Total energy + Delta-G solvation = -3916.420363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.30364 -40.18941 -38.92111 -36.74682 -35.52836 -33.16633 -32.37789 -31.95450 -31.33012 -30.48345 -28.94968 -28.26831 -26.32711 -24.36869 -23.50497 -23.01759 -22.44090 -21.90032 -21.10987 -19.10004 -18.78341 -17.36264 -17.23714 -16.86992 -16.46777 -16.10648 -15.76623 -15.30821 -15.23576 -14.46988 -14.38732 -14.24056 -13.84489 -13.67175 -13.60561 -13.22901 -13.10072 -12.87616 -12.77597 -12.54519 -12.42647 -12.14008 -12.00576 -11.87005 -11.35620 -11.17315 -11.07854 -10.82048 -10.72761 -10.69351 -10.40268 -9.99157 -9.89522 -9.71892 -9.61981 -9.37482 -8.92971 -8.80579 -8.72202 -8.35238 -8.05157 -6.29575 -4.32274 1.14620 1.37971 2.08213 2.62945 2.92753 3.15093 3.21464 3.24112 3.39223 3.69312 4.03777 4.21402 4.53070 4.58598 4.80935 4.92175 4.97554 4.98459 4.98636 5.03316 5.11799 5.16525 5.27203 5.48107 5.49901 5.59294 5.66962 5.71115 5.75473 5.80104 5.90146 5.96502 6.02315 6.03624 6.13552 6.21224 6.21860 6.25022 6.39505 6.41534 6.43676 6.58709 6.78992 6.85624 7.04356 7.33996 7.41456 7.77964 8.05093 8.24949 8.41626 8.46885 8.72994 9.29405 10.82609 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.005858 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.353179 B = 4778.458169 C = 6131.851577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.081 3.919 3 Si 0.865 3.135 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.205 3.795 10 N -0.566 5.566 11 C 0.159 3.841 12 C -0.149 4.149 13 C -0.056 4.056 14 C -0.179 4.179 15 C 0.093 3.907 16 N -0.488 5.488 17 C 0.115 3.885 18 C 0.592 3.408 19 O -0.553 6.553 20 C 0.017 3.983 21 N -0.371 5.371 22 H 0.447 0.553 23 N -0.276 5.276 24 C 0.033 3.967 25 C -0.169 4.169 26 C -0.044 4.044 27 C -0.113 4.113 28 C -0.118 4.118 29 C -0.029 4.029 30 H 0.267 0.733 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.778 -2.247 -1.827 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.123 4.123 3 Si 0.691 3.309 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.084 3.916 10 N -0.294 5.294 11 C 0.036 3.964 12 C -0.152 4.152 13 C -0.082 4.082 14 C -0.199 4.199 15 C -0.064 4.064 16 N -0.197 5.197 17 C -0.042 4.042 18 C 0.377 3.623 19 O -0.431 6.431 20 C -0.112 4.112 21 N -0.084 5.084 22 H 0.291 0.709 23 N -0.106 5.106 24 C -0.128 4.128 25 C -0.180 4.180 26 C -0.082 4.082 27 C -0.151 4.151 28 C -0.156 4.156 29 C -0.068 4.068 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.068 -2.147 -2.080 14.382 hybrid contribution 0.103 0.015 0.060 0.121 sum 14.171 -2.131 -2.020 14.472 Atomic orbital electron populations 1.69872 1.06195 1.27332 1.49074 1.24804 0.94692 0.98843 0.93944 0.86996 0.80622 0.84065 0.79183 1.19677 1.20723 1.18598 1.21256 0.88710 0.95027 1.53236 0.90417 1.19985 0.96067 0.77282 0.98282 1.47840 1.61185 1.16360 1.04042 1.20250 0.91936 0.98518 0.85717 1.21387 0.97872 0.96920 0.98995 1.21664 0.92061 0.98367 0.96140 1.22117 0.98051 0.99854 0.99856 1.22724 0.97793 0.91086 0.94840 1.67716 1.00148 1.28517 1.23290 1.22803 0.94199 0.94716 0.92527 1.17043 0.77260 0.85424 0.82536 1.90742 1.50185 1.15213 1.87009 1.20712 0.95234 1.02352 0.92911 1.43469 1.23066 1.30388 1.11449 0.70871 1.72755 1.17130 1.05367 1.15358 1.21733 0.94670 1.00646 0.95735 1.20137 1.00701 0.99579 0.97567 1.19953 0.92163 0.99101 0.96968 1.21547 0.97533 0.98159 0.97839 1.21572 0.97809 0.97735 0.98468 1.19940 0.97035 0.93546 0.96268 0.92263 0.94795 0.94102 0.88127 0.89124 0.84486 0.85114 0.83174 0.82544 0.90832 0.91436 0.91599 0.91739 0.91412 0.91230 0.90310 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 19.95 27.47 -169.99 -4.67 15.29 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.66 6.54 56.52 0.37 -5.29 16 7 C -0.54 -13.89 9.94 -34.44 -0.34 -14.23 16 8 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 9 C 0.20 4.37 4.19 -5.20 -0.02 4.35 16 10 N -0.57 -10.77 2.44 -177.81 -0.43 -11.20 16 11 C 0.16 2.60 5.62 -5.19 -0.03 2.58 16 12 C -0.15 -2.21 5.48 -104.48 -0.57 -2.79 16 13 C -0.06 -0.76 9.86 -39.27 -0.39 -1.15 16 14 C -0.18 -2.08 10.11 -39.44 -0.40 -2.48 16 15 C 0.09 1.13 11.18 -17.54 -0.20 0.93 16 16 N -0.49 -7.21 10.36 -13.25 -0.14 -7.35 16 17 C 0.11 1.72 10.86 -17.55 -0.19 1.53 16 18 C 0.59 11.57 7.52 -12.64 -0.09 11.47 16 19 O -0.55 -11.31 16.60 5.25 0.09 -11.23 16 20 C 0.02 0.33 5.57 -82.32 -0.46 -0.13 16 21 N -0.37 -6.80 6.96 33.32 0.23 -6.57 16 22 H 0.45 7.28 8.96 -190.23 -1.71 5.57 16 23 N -0.28 -5.06 12.13 33.65 0.41 -4.65 16 24 C 0.03 0.56 7.13 -82.54 -0.59 -0.03 16 25 C -0.17 -2.97 4.92 -104.46 -0.51 -3.49 16 26 C -0.04 -0.65 6.14 -27.78 -0.17 -0.82 16 27 C -0.11 -1.33 5.88 -26.46 -0.16 -1.49 16 28 C -0.12 -1.37 5.85 -26.52 -0.16 -1.52 16 29 C -0.03 -0.38 6.31 -27.61 -0.17 -0.55 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 32 H 0.04 0.91 4.80 -51.93 -0.25 0.66 16 33 H 0.10 1.61 8.02 -51.93 -0.42 1.19 16 34 H 0.09 1.45 7.30 -51.93 -0.38 1.07 16 35 H 0.14 1.88 7.99 -52.49 -0.42 1.46 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 38 H 0.16 2.27 8.06 -52.49 -0.42 1.84 16 39 H 0.07 1.16 7.82 -51.93 -0.41 0.75 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 43 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -31.35 382.23 -10.29 -41.64 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -7.76 Total: 8.74 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -4.55 Total: -5.74 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.84 Total: -54.46 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.67 Total: 15.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.35 -10.29 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126994731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.598 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds