Wall clock time and date at job start Sat Apr 11 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00187 * 2 1 4 4 H 1.48496 * 109.47423 * 269.99717 * 3 2 1 5 5 H 1.48498 * 109.47052 * 29.99719 * 3 2 1 6 6 H 1.48504 * 109.47335 * 149.99791 * 3 2 1 7 7 C 1.37875 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99582 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00485 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47603 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00345 * 274.84635 * 10 9 7 12 12 C 1.50701 * 109.47156 * 269.99981 * 11 10 9 13 13 C 1.38680 * 120.41307 * 269.72028 * 12 11 10 14 14 C 1.38629 * 118.41693 * 179.78060 * 13 12 11 15 15 C 1.38235 * 119.16151 * 0.51352 * 14 13 12 16 16 N 1.31854 * 120.76090 * 359.72719 * 15 14 13 17 17 C 1.31886 * 121.72845 * 359.97438 * 16 15 14 18 18 C 1.34779 * 119.99746 * 94.84200 * 10 9 7 19 19 O 1.21629 * 119.99504 * 185.73356 * 18 10 9 20 20 C 1.47162 * 120.00078 * 5.73430 * 18 10 9 21 21 N 1.36994 * 127.04415 * 251.85446 * 20 18 10 22 22 H 0.96998 * 125.15453 * 0.02562 * 21 20 18 23 23 N 1.28826 * 109.69772 * 179.97438 * 21 20 18 24 24 C 1.30110 * 110.78029 * 359.91395 * 23 21 20 25 25 C 1.37198 * 127.04136 * 71.83592 * 20 18 10 26 26 C 1.50382 * 129.91280 * 0.18419 * 25 20 18 27 27 C 1.53500 * 108.12021 * 163.69176 * 26 25 20 28 28 C 1.53025 * 109.69056 * 50.02372 * 27 26 25 29 29 C 1.50869 * 129.05769 * 180.34132 * 24 23 21 30 30 H 0.97003 * 120.00031 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46810 * 60.00072 * 9 7 2 32 32 H 1.08997 * 109.47307 * 300.00663 * 9 7 2 33 33 H 1.09004 * 109.47122 * 29.99156 * 11 10 9 34 34 H 1.08993 * 109.47412 * 149.99631 * 11 10 9 35 35 H 1.07990 * 120.79042 * 0.02562 * 13 12 11 36 36 H 1.07995 * 120.42189 * 180.21502 * 14 13 12 37 37 H 1.07998 * 119.62030 * 179.74804 * 15 14 13 38 38 H 1.07998 * 119.61533 * 180.02562 * 17 16 15 39 39 H 1.08999 * 109.73695 * 283.34768 * 26 25 20 40 40 H 1.09001 * 109.73047 * 43.98943 * 26 25 20 41 41 H 1.09005 * 109.43262 * 170.08954 * 27 26 25 42 42 H 1.09003 * 109.43590 * 289.95507 * 27 26 25 43 43 H 1.08998 * 109.40238 * 48.68302 * 28 27 26 44 44 H 1.08998 * 109.40611 * 168.43870 * 28 27 26 45 45 H 1.08998 * 109.71852 * 43.37445 * 29 24 23 46 46 H 1.09001 * 109.75068 * 282.74524 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0011 10 7 3.9998 -2.5753 0.0022 11 6 4.1424 -3.3009 1.2669 12 6 5.5261 -3.0777 1.8208 13 6 6.5624 -3.9371 1.4883 14 6 7.8197 -3.6903 2.0177 15 6 7.9949 -2.6098 2.8619 16 7 6.9849 -1.8163 3.1602 17 6 5.7769 -2.0173 2.6705 18 6 4.3177 -3.1786 -1.1603 19 8 4.6230 -4.3559 -1.1709 20 6 4.2956 -2.4128 -2.4168 21 7 3.3818 -2.5189 -3.4320 22 1 2.6248 -3.1253 -3.4409 23 7 3.6796 -1.6905 -4.3726 24 6 4.7477 -1.0123 -4.0693 25 6 5.1856 -1.4461 -2.8113 26 6 6.4001 -0.9074 -2.1069 27 6 7.2553 -0.1561 -3.1367 28 6 6.3792 0.8283 -3.9146 29 6 5.4489 0.0621 -4.8632 30 1 -0.4850 0.8401 -0.0004 31 1 3.8744 -0.6801 0.8912 32 1 3.8752 -0.6805 -0.8887 33 1 3.4026 -2.9370 1.9800 34 1 3.9876 -4.3658 1.0943 35 1 6.3950 -4.7762 0.8295 36 1 8.6507 -4.3368 1.7775 37 1 8.9702 -2.4131 3.2817 38 1 4.9744 -1.3456 2.9372 39 1 6.0935 -0.2245 -1.3147 40 1 6.9740 -1.7306 -1.6813 41 1 8.0458 0.3903 -2.6221 42 1 7.7006 -0.8707 -3.8289 43 1 5.7810 1.4118 -3.2147 44 1 7.0141 1.4990 -4.4933 45 1 4.7130 0.7446 -5.2883 46 1 6.0334 -0.3930 -5.6628 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126994731.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:39 Heat of formation + Delta-G solvation = 45.196825 kcal Electronic energy + Delta-G solvation = -30632.586317 eV Core-core repulsion = 26715.352516 eV Total energy + Delta-G solvation = -3917.233801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.66510 -41.36157 -40.33931 -37.82042 -37.09840 -34.86580 -33.89552 -33.10610 -32.49078 -31.71419 -30.18313 -30.03611 -27.65612 -25.54229 -24.86000 -24.37351 -23.82474 -23.02824 -22.39425 -20.40698 -20.03099 -19.18357 -18.84832 -18.08536 -17.82092 -17.40198 -17.02635 -16.63244 -16.49721 -16.15887 -15.63612 -15.47888 -15.09373 -14.79286 -14.75734 -14.65214 -14.33964 -14.30419 -13.98005 -13.90879 -13.82444 -13.58020 -13.38413 -12.98941 -12.88118 -12.70014 -12.47718 -12.24812 -12.12788 -11.81543 -11.68736 -11.66805 -11.31939 -11.16924 -10.87260 -10.74268 -10.46650 -10.09937 -9.99922 -9.74401 -9.61265 -8.37559 -6.44159 0.09042 0.32659 0.65445 1.13818 1.31936 1.33715 1.41527 1.61431 1.97468 2.26674 2.30504 2.92860 2.97560 3.36138 3.44055 3.53302 3.83039 3.88038 3.96440 4.03475 4.07858 4.08904 4.13244 4.33565 4.43684 4.53724 4.54584 4.59521 4.63769 4.66599 4.68314 4.71043 4.79185 4.87340 4.97593 5.06054 5.17408 5.19799 5.22396 5.30923 5.33327 5.36855 5.44333 5.49915 5.64094 5.77332 6.01737 6.05893 6.34774 6.59535 6.91417 7.01519 7.04717 7.21598 8.77991 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008000 B = 0.005858 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.353179 B = 4778.458169 C = 6131.851577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.027 3.973 3 Si 0.924 3.076 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.235 1.235 7 C -0.538 4.538 8 H 0.037 0.963 9 C 0.221 3.779 10 N -0.566 5.566 11 C 0.159 3.841 12 C -0.158 4.158 13 C -0.064 4.064 14 C -0.166 4.166 15 C 0.095 3.905 16 N -0.507 5.507 17 C 0.104 3.896 18 C 0.594 3.406 19 O -0.567 6.567 20 C -0.013 4.013 21 N -0.380 5.380 22 H 0.448 0.552 23 N -0.294 5.294 24 C 0.027 3.973 25 C -0.170 4.170 26 C -0.046 4.046 27 C -0.108 4.108 28 C -0.115 4.115 29 C -0.031 4.031 30 H 0.268 0.732 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.166 0.834 37 H 0.187 0.813 38 H 0.153 0.847 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.052 0.948 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.655 -0.856 -2.001 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.172 4.172 3 Si 0.747 3.253 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.158 1.158 7 C -0.577 4.577 8 H 0.055 0.945 9 C 0.099 3.901 10 N -0.294 5.294 11 C 0.036 3.964 12 C -0.161 4.161 13 C -0.090 4.090 14 C -0.186 4.186 15 C -0.062 4.062 16 N -0.216 5.216 17 C -0.053 4.053 18 C 0.379 3.621 19 O -0.447 6.447 20 C -0.141 4.141 21 N -0.094 5.094 22 H 0.293 0.707 23 N -0.124 5.124 24 C -0.134 4.134 25 C -0.181 4.181 26 C -0.084 4.084 27 C -0.145 4.145 28 C -0.153 4.153 29 C -0.070 4.070 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.151 0.849 36 H 0.183 0.817 37 H 0.203 0.797 38 H 0.171 0.829 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.122 0.878 45 H 0.101 0.899 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.959 -0.777 -2.237 18.115 hybrid contribution -1.091 -0.551 0.115 1.228 sum 16.868 -1.329 -2.122 17.053 Atomic orbital electron populations 1.70017 1.08085 1.28272 1.51151 1.25618 0.95351 1.02567 0.93701 0.86044 0.80428 0.79458 0.79354 1.19630 1.20566 1.15782 1.21417 0.90873 0.93372 1.52009 0.94470 1.19650 0.93125 0.78772 0.98504 1.47809 1.60913 1.15672 1.04996 1.20311 0.93443 0.98022 0.84618 1.21143 0.97077 0.97926 0.99939 1.21744 0.92826 0.98085 0.96394 1.22452 0.97944 0.99765 0.98396 1.23349 0.98453 0.90313 0.94075 1.67746 1.00417 1.29586 1.23841 1.22753 0.94678 0.94856 0.93018 1.17150 0.76854 0.85272 0.82816 1.90717 1.50976 1.15756 1.87250 1.20897 0.96441 1.03699 0.93107 1.43548 1.23386 1.30866 1.11581 0.70679 1.72747 1.18118 1.05890 1.15653 1.22530 0.94044 1.00816 0.95984 1.20602 1.00999 0.98668 0.97832 1.20070 0.91565 0.99145 0.97592 1.21559 0.97432 0.98241 0.97264 1.21603 0.97720 0.97750 0.98216 1.20193 0.97402 0.92620 0.96778 0.92270 0.93603 0.94170 0.88475 0.89306 0.84941 0.81681 0.79657 0.82936 0.91627 0.91629 0.89229 0.90865 0.92913 0.87772 0.89900 0.88223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.48 13.96 21.45 0.30 -55.18 16 2 C 0.03 1.49 5.47 84.65 0.46 1.95 16 3 Si 0.92 40.91 27.47 68.60 1.88 42.79 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.23 -9.31 6.54 99.48 0.65 -8.66 16 7 C -0.54 -28.37 9.94 25.60 0.25 -28.12 16 8 H 0.04 2.22 8.06 -2.91 -0.02 2.19 16 9 C 0.22 9.51 4.19 85.63 0.36 9.87 16 10 N -0.57 -21.98 2.44 -834.72 -2.04 -24.02 16 11 C 0.16 5.33 5.62 85.63 0.48 5.81 16 12 C -0.16 -4.64 5.48 -19.77 -0.11 -4.74 16 13 C -0.06 -1.66 9.86 22.47 0.22 -1.44 16 14 C -0.17 -3.34 10.11 22.36 0.23 -3.12 16 15 C 0.10 2.00 11.18 84.69 0.95 2.95 16 16 N -0.51 -13.93 10.36 -195.84 -2.03 -15.96 16 17 C 0.10 3.02 10.86 84.67 0.92 3.94 16 18 C 0.59 23.69 7.52 86.59 0.65 24.34 16 19 O -0.57 -23.74 16.60 -4.12 -0.07 -23.81 16 20 C -0.01 -0.48 5.57 40.44 0.23 -0.26 16 21 N -0.38 -14.39 6.96 -48.49 -0.34 -14.72 16 22 H 0.45 15.55 8.96 -219.81 -1.97 13.58 16 23 N -0.29 -10.84 12.13 -47.46 -0.58 -11.41 16 24 C 0.03 0.90 7.13 43.32 0.31 1.21 16 25 C -0.17 -5.85 4.92 -19.76 -0.10 -5.95 16 26 C -0.05 -1.27 6.14 29.92 0.18 -1.09 16 27 C -0.11 -2.14 5.88 30.77 0.18 -1.96 16 28 C -0.12 -2.25 5.85 30.73 0.18 -2.07 16 29 C -0.03 -0.73 6.31 30.03 0.19 -0.54 16 30 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.05 1.89 7.17 -2.38 -0.02 1.87 16 32 H 0.04 1.77 4.80 -2.39 -0.01 1.76 16 33 H 0.10 3.26 8.02 -2.39 -0.02 3.24 16 34 H 0.09 2.97 7.30 -2.39 -0.02 2.95 16 35 H 0.13 3.55 7.99 -2.92 -0.02 3.52 16 36 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 38 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 39 H 0.07 1.94 7.82 -2.39 -0.02 1.92 16 40 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.07 1.36 8.11 -2.39 -0.02 1.34 16 43 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.70 382.23 1.71 -67.99 By element: Atomic # 1 Polarization: 34.55 SS G_CDS: -1.01 Total: 33.54 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.59 Total: 0.79 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -4.68 Total: -121.30 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.07 Total: -23.81 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.88 Total: 42.79 kcal Total: -69.70 1.71 -67.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126994731.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.185 kcal (2) G-P(sol) polarization free energy of solvation -69.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds