Wall clock time and date at job start Sat Apr 11 2020 06:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31289 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48497 * 109.47109 * 274.97917 * 3 2 1 5 5 H 1.48503 * 109.46868 * 34.98071 * 3 2 1 6 6 H 1.48503 * 109.47303 * 154.97856 * 3 2 1 7 7 C 1.38990 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99883 * 174.05902 * 7 2 1 9 9 N 1.37319 * 119.99878 * 354.06733 * 7 2 1 10 10 C 1.36492 * 126.07156 * 185.87621 * 9 7 2 11 11 C 1.35681 * 107.50942 * 180.02562 * 10 9 7 12 12 N 1.40599 * 126.08008 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99779 * 179.97438 * 12 11 10 14 14 O 1.21305 * 119.99945 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99951 * 180.02562 * 13 12 11 16 16 H 1.09007 * 109.87904 * 359.67898 * 15 13 12 17 17 C 1.54315 * 109.88832 * 238.48380 * 15 13 12 18 18 C 1.55137 * 103.01779 * 218.30716 * 17 15 13 19 19 C 1.54910 * 101.65378 * 35.65476 * 18 17 15 20 20 N 1.47440 * 109.89042 * 120.71367 * 15 13 12 21 21 C 1.46907 * 110.99847 * 356.14580 * 20 15 13 22 22 C 1.50702 * 109.46725 * 177.79646 * 21 20 15 23 23 C 1.38237 * 119.99879 * 269.72657 * 22 21 20 24 24 C 1.38240 * 119.99681 * 179.81289 * 23 22 21 25 25 C 1.38241 * 119.99759 * 0.40167 * 24 23 22 26 26 C 1.38236 * 119.99874 * 359.85417 * 25 24 23 27 27 C 1.38227 * 120.00338 * 359.95671 * 26 25 24 28 28 C 1.40647 * 107.83774 * 0.25859 * 11 10 9 29 29 N 1.30914 * 108.38478 * 359.55632 * 28 11 10 30 30 H 0.97005 * 120.00421 * 0.02562 * 1 2 3 31 31 H 1.07997 * 126.24250 * 359.97438 * 10 9 7 32 32 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 33 33 H 1.09000 * 110.70766 * 336.69518 * 17 15 13 34 34 H 1.09006 * 110.70646 * 99.92440 * 17 15 13 35 35 H 1.09000 * 110.99222 * 277.56076 * 18 17 15 36 36 H 1.09000 * 110.99056 * 153.74292 * 18 17 15 37 37 H 1.08991 * 110.37309 * 204.09980 * 19 18 17 38 38 H 1.09004 * 110.37112 * 81.75914 * 19 18 17 39 39 H 1.09002 * 109.47181 * 297.80022 * 21 20 15 40 40 H 1.09002 * 109.46410 * 57.80128 * 21 20 15 41 41 H 1.07999 * 119.99911 * 0.02562 * 23 22 21 42 42 H 1.07992 * 119.99801 * 180.23275 * 24 23 22 43 43 H 1.07998 * 119.99649 * 179.83704 * 25 24 23 44 44 H 1.07998 * 119.99573 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00113 * 180.02562 * 27 26 25 46 46 H 1.07995 * 125.81028 * 179.74347 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3892 2.1072 -1.3948 5 1 1.5009 2.6200 0.8027 6 1 3.5932 1.4121 0.5922 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2062 -0.0963 9 7 1.3268 -2.3896 0.1240 10 6 1.8862 -3.6281 0.2521 11 6 0.8732 -4.5259 0.3453 12 7 1.0110 -5.9177 0.4889 13 6 -0.0846 -6.6984 0.5705 14 8 -1.1895 -6.2003 0.5197 15 6 0.0630 -8.1902 0.7250 16 1 1.1195 -8.4579 0.7463 17 6 -0.6413 -8.9113 -0.4435 18 6 -1.2760 -10.1499 0.2419 19 6 -1.6792 -9.5719 1.6214 20 7 -0.5918 -8.6329 1.9697 21 6 -1.1090 -7.4865 2.7289 22 6 -1.8170 -7.9804 3.9642 23 6 -3.1701 -8.2597 3.9202 24 6 -3.8187 -8.7165 5.0523 25 6 -3.1158 -8.8859 6.2306 26 6 -1.7638 -8.6014 6.2758 27 6 -1.1144 -8.1485 5.1427 28 6 -0.3392 -3.8173 0.2661 29 7 -0.0654 -2.5433 0.1403 30 1 -0.4851 0.8401 -0.0004 31 1 2.9424 -3.8524 0.2743 32 1 1.8945 -6.3160 0.5299 33 1 -1.4115 -8.2756 -0.8805 34 1 0.0818 -9.2174 -1.1995 35 1 -0.5460 -10.9517 0.3527 36 1 -2.1517 -10.4945 -0.3081 37 1 -1.7444 -10.3686 2.3623 38 1 -2.6290 -9.0422 1.5479 39 1 -0.2812 -6.8392 3.0187 40 1 -1.8086 -6.9260 2.1087 41 1 -3.7198 -8.1244 3.0005 42 1 -4.8750 -8.9383 5.0170 43 1 -3.6230 -9.2402 7.1158 44 1 -1.2148 -8.7334 7.1964 45 1 -0.0580 -7.9266 5.1780 46 1 -1.3278 -4.2502 0.3057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139278942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:45 Heat of formation + Delta-G solvation = 92.025140 kcal Electronic energy + Delta-G solvation = -29132.983455 eV Core-core repulsion = 25217.780283 eV Total energy + Delta-G solvation = -3915.203173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75571 -39.54988 -38.90196 -37.26769 -34.26176 -33.34175 -33.12094 -30.94098 -30.44383 -30.16579 -29.42693 -27.56045 -25.54644 -24.88989 -22.71759 -22.45639 -21.67210 -20.95553 -20.80302 -19.57818 -19.39800 -17.69618 -16.96936 -16.44683 -16.26489 -15.57587 -15.45512 -15.23532 -15.02741 -14.89992 -14.44456 -14.01758 -13.75026 -13.51246 -13.41387 -13.25055 -13.04779 -12.86133 -12.74430 -12.21016 -12.14280 -11.89144 -11.64782 -11.46065 -11.41426 -11.25992 -11.21734 -10.97755 -10.96439 -10.83907 -10.79256 -10.53778 -10.06003 -9.49441 -9.16902 -8.91831 -8.83479 -8.81048 -8.13651 -8.06551 -6.70616 -6.57500 -4.24049 1.32569 1.40048 2.69693 2.99036 3.04443 3.09883 3.55734 3.61698 3.71267 3.86806 4.15593 4.41108 4.47480 4.60572 4.72280 4.85909 4.87256 4.96032 5.00075 5.01072 5.09320 5.19961 5.30269 5.36416 5.47351 5.50815 5.67401 5.68369 5.71950 5.79925 5.89401 5.93787 6.06527 6.12674 6.17211 6.23451 6.43260 6.44261 6.48085 6.65636 6.83716 6.89921 6.92989 6.95160 7.00125 7.10893 7.22803 7.84650 8.14523 8.26864 8.60612 8.81553 9.36735 9.65650 10.38768 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.002707 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.753931 B =10340.919393 C =11598.713938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.047 3.953 3 Si 0.934 3.066 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.324 4.324 8 H 0.116 0.884 9 N -0.142 5.142 10 C -0.083 4.083 11 C -0.062 4.062 12 N -0.617 5.617 13 C 0.486 3.514 14 O -0.535 6.535 15 C 0.058 3.942 16 H 0.099 0.901 17 C -0.128 4.128 18 C -0.127 4.127 19 C 0.041 3.959 20 N -0.497 5.497 21 C 0.057 3.943 22 C -0.070 4.070 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.123 4.123 27 C -0.101 4.101 28 C -0.032 4.032 29 N -0.261 5.261 30 H 0.275 0.725 31 H 0.145 0.855 32 H 0.398 0.602 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 -18.975 5.880 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.170 4.170 3 Si 0.757 3.243 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.456 4.456 8 H 0.134 0.866 9 N 0.090 4.910 10 C -0.234 4.234 11 C -0.167 4.167 12 N -0.259 5.259 13 C 0.272 3.728 14 O -0.413 6.413 15 C -0.054 4.054 16 H 0.117 0.883 17 C -0.166 4.166 18 C -0.165 4.165 19 C -0.087 4.087 20 N -0.222 5.222 21 C -0.070 4.070 22 C -0.070 4.070 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.120 4.120 28 C -0.207 4.207 29 N -0.092 5.092 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.231 0.769 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -2.191 -17.506 6.035 18.646 hybrid contribution 0.807 0.133 -0.286 0.866 sum -1.384 -17.373 5.748 18.351 Atomic orbital electron populations 1.70219 1.06164 1.27982 1.35207 1.25640 0.95679 1.00272 0.95452 0.85831 0.79530 0.80073 0.78837 1.19661 1.20031 1.18736 1.19864 0.92134 0.80714 1.52904 0.86635 1.44546 1.03994 1.03727 1.38713 1.21279 0.96849 0.85854 1.19409 1.17291 0.94266 0.81808 1.23363 1.42658 1.08334 1.05292 1.69613 1.20728 0.84687 0.88735 0.78691 1.90517 1.25468 1.75034 1.50262 1.22527 1.01039 0.90912 0.90875 0.88343 1.22742 1.00466 0.96763 0.96663 1.22699 1.00817 0.97409 0.95569 1.23127 0.93568 0.95672 0.96301 1.64183 1.27642 1.14085 1.16318 1.21927 1.00113 0.92349 0.92601 1.19846 0.93668 0.98377 0.95111 1.21130 0.94220 0.99259 0.98432 1.21094 0.99679 1.00207 0.93102 1.21102 0.94600 1.00877 0.97854 1.21126 0.94813 0.99935 0.98261 1.21078 0.99852 0.98662 0.92373 1.24072 0.97910 0.90926 1.07836 1.78252 0.90311 1.15082 1.25592 0.91475 0.83732 0.76917 0.90029 0.90268 0.90623 0.90643 0.90171 0.92883 0.90062 0.88864 0.86254 0.86325 0.86460 0.86310 0.86071 0.80875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.53 11.84 55.49 0.66 -20.87 16 2 C 0.05 1.21 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 18.93 29.56 -169.99 -5.02 13.91 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.15 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 7 C -0.32 -8.57 10.24 -14.81 -0.15 -8.72 16 8 H 0.12 2.73 7.84 -52.49 -0.41 2.32 16 9 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 16 10 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 16 11 C -0.06 -1.40 6.90 -83.84 -0.58 -1.98 16 12 N -0.62 -10.70 5.47 -10.00 -0.05 -10.76 16 13 C 0.49 8.11 5.05 -10.98 -0.06 8.06 16 14 O -0.53 -10.76 10.97 5.54 0.06 -10.70 16 15 C 0.06 0.73 3.84 -67.88 -0.26 0.47 16 16 H 0.10 1.04 7.94 -51.92 -0.41 0.63 16 17 C -0.13 -1.41 6.43 -24.91 -0.16 -1.57 16 18 C -0.13 -1.18 7.08 -24.59 -0.17 -1.36 16 19 C 0.04 0.45 5.38 -2.30 -0.01 0.44 16 20 N -0.50 -6.32 5.25 -226.15 -1.19 -7.51 16 21 C 0.06 0.83 3.88 -4.97 -0.02 0.81 16 22 C -0.07 -0.93 4.83 -104.62 -0.51 -1.43 16 23 C -0.11 -1.37 8.49 -39.58 -0.34 -1.71 16 24 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.13 -1.30 10.05 -39.58 -0.40 -1.69 16 26 C -0.12 -1.34 10.05 -39.59 -0.40 -1.73 16 27 C -0.10 -1.25 9.70 -39.59 -0.38 -1.63 16 28 C -0.03 -0.83 10.85 -17.03 -0.18 -1.02 16 29 N -0.26 -7.59 10.42 30.80 0.32 -7.27 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 32 H 0.40 5.39 8.68 -40.82 -0.35 5.03 16 33 H 0.08 1.07 7.53 -51.93 -0.39 0.68 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.63 6.26 -51.93 -0.32 0.31 16 39 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 40 H 0.09 1.62 5.28 -51.93 -0.27 1.34 16 41 H 0.12 1.40 7.12 -52.49 -0.37 1.03 16 42 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 45 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 46 H 0.17 4.48 5.92 -52.49 -0.31 4.17 16 LS Contribution 373.66 15.07 5.63 5.63 Total: -1.00 -32.70 373.66 -10.12 -42.82 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -6.19 Total: 14.49 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -4.30 Total: -15.80 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: -0.31 Total: -50.35 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.06 Total: -10.70 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.02 Total: 13.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.70 -10.12 -42.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139278942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.846 kcal (2) G-P(sol) polarization free energy of solvation -32.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds