Wall clock time and date at job start Sat Apr 11 2020 06:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31289 * 1 3 3 Si 1.86802 * 120.00135 * 2 1 4 4 H 1.48497 * 109.47109 * 274.97917 * 3 2 1 5 5 H 1.48503 * 109.46868 * 34.98071 * 3 2 1 6 6 H 1.48503 * 109.47303 * 154.97856 * 3 2 1 7 7 C 1.38990 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99883 * 174.05902 * 7 2 1 9 9 N 1.37319 * 119.99878 * 354.06733 * 7 2 1 10 10 C 1.36492 * 126.07156 * 185.87621 * 9 7 2 11 11 C 1.35681 * 107.50942 * 180.02562 * 10 9 7 12 12 N 1.40599 * 126.08008 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99779 * 179.97438 * 12 11 10 14 14 O 1.21305 * 119.99945 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.99951 * 180.02562 * 13 12 11 16 16 H 1.09007 * 109.87904 * 359.67898 * 15 13 12 17 17 C 1.54315 * 109.88832 * 238.48380 * 15 13 12 18 18 C 1.55137 * 103.01779 * 218.30716 * 17 15 13 19 19 C 1.54910 * 101.65378 * 35.65476 * 18 17 15 20 20 N 1.47440 * 109.89042 * 120.71367 * 15 13 12 21 21 C 1.46907 * 110.99847 * 356.14580 * 20 15 13 22 22 C 1.50702 * 109.46725 * 177.79646 * 21 20 15 23 23 C 1.38237 * 119.99879 * 269.72657 * 22 21 20 24 24 C 1.38240 * 119.99681 * 179.81289 * 23 22 21 25 25 C 1.38241 * 119.99759 * 0.40167 * 24 23 22 26 26 C 1.38236 * 119.99874 * 359.85417 * 25 24 23 27 27 C 1.38227 * 120.00338 * 359.95671 * 26 25 24 28 28 C 1.40647 * 107.83774 * 0.25859 * 11 10 9 29 29 N 1.30914 * 108.38478 * 359.55632 * 28 11 10 30 30 H 0.97005 * 120.00421 * 0.02562 * 1 2 3 31 31 H 1.07997 * 126.24250 * 359.97438 * 10 9 7 32 32 H 0.96999 * 120.00080 * 0.02562 * 12 11 10 33 33 H 1.09000 * 110.70766 * 336.69518 * 17 15 13 34 34 H 1.09006 * 110.70646 * 99.92440 * 17 15 13 35 35 H 1.09000 * 110.99222 * 277.56076 * 18 17 15 36 36 H 1.09000 * 110.99056 * 153.74292 * 18 17 15 37 37 H 1.08991 * 110.37309 * 204.09980 * 19 18 17 38 38 H 1.09004 * 110.37112 * 81.75914 * 19 18 17 39 39 H 1.09002 * 109.47181 * 297.80022 * 21 20 15 40 40 H 1.09002 * 109.46410 * 57.80128 * 21 20 15 41 41 H 1.07999 * 119.99911 * 0.02562 * 23 22 21 42 42 H 1.07992 * 119.99801 * 180.23275 * 24 23 22 43 43 H 1.07998 * 119.99649 * 179.83704 * 25 24 23 44 44 H 1.07998 * 119.99573 * 179.97438 * 26 25 24 45 45 H 1.08003 * 120.00113 * 180.02562 * 27 26 25 46 46 H 1.07995 * 125.81028 * 179.74347 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 2.3892 2.1072 -1.3948 5 1 1.5009 2.6200 0.8027 6 1 3.5932 1.4121 0.5922 7 6 2.0079 -1.2037 0.0005 8 1 3.0835 -1.2062 -0.0963 9 7 1.3268 -2.3896 0.1240 10 6 1.8862 -3.6281 0.2521 11 6 0.8732 -4.5259 0.3453 12 7 1.0110 -5.9177 0.4889 13 6 -0.0846 -6.6984 0.5705 14 8 -1.1895 -6.2003 0.5197 15 6 0.0630 -8.1902 0.7250 16 1 1.1195 -8.4579 0.7463 17 6 -0.6413 -8.9113 -0.4435 18 6 -1.2760 -10.1499 0.2419 19 6 -1.6792 -9.5719 1.6214 20 7 -0.5918 -8.6329 1.9697 21 6 -1.1090 -7.4865 2.7289 22 6 -1.8170 -7.9804 3.9642 23 6 -3.1701 -8.2597 3.9202 24 6 -3.8187 -8.7165 5.0523 25 6 -3.1158 -8.8859 6.2306 26 6 -1.7638 -8.6014 6.2758 27 6 -1.1144 -8.1485 5.1427 28 6 -0.3392 -3.8173 0.2661 29 7 -0.0654 -2.5433 0.1403 30 1 -0.4851 0.8401 -0.0004 31 1 2.9424 -3.8524 0.2743 32 1 1.8945 -6.3160 0.5299 33 1 -1.4115 -8.2756 -0.8805 34 1 0.0818 -9.2174 -1.1995 35 1 -0.5460 -10.9517 0.3527 36 1 -2.1517 -10.4945 -0.3081 37 1 -1.7444 -10.3686 2.3623 38 1 -2.6290 -9.0422 1.5479 39 1 -0.2812 -6.8392 3.0187 40 1 -1.8086 -6.9260 2.1087 41 1 -3.7198 -8.1244 3.0005 42 1 -4.8750 -8.9383 5.0170 43 1 -3.6230 -9.2402 7.1158 44 1 -1.2148 -8.7334 7.1964 45 1 -0.0580 -7.9266 5.1780 46 1 -1.3278 -4.2502 0.3057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139278942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:44 Heat of formation + Delta-G solvation = 70.388431 kcal Electronic energy + Delta-G solvation = -29133.921694 eV Core-core repulsion = 25217.780283 eV Total energy + Delta-G solvation = -3916.141411 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09925 -41.22156 -39.99231 -38.48783 -35.94297 -35.00555 -34.23688 -32.30304 -31.82199 -31.25537 -30.60783 -29.24768 -26.86055 -26.48898 -23.87210 -23.51167 -22.81455 -22.57297 -21.75536 -21.31645 -20.83084 -19.39658 -18.19897 -17.59853 -17.39604 -17.35439 -16.71724 -16.53881 -16.18014 -16.01181 -15.69008 -15.56565 -15.14059 -14.95805 -14.78732 -14.62015 -14.23019 -13.93570 -13.75321 -13.52537 -13.33794 -13.22154 -13.09694 -12.92773 -12.86904 -12.84050 -12.36833 -12.09174 -12.06584 -11.91040 -11.85525 -11.71687 -11.57854 -10.99893 -10.90903 -10.79305 -10.11585 -9.80971 -9.75715 -9.28235 -8.51999 -8.48793 -6.25542 0.41626 0.50757 1.16753 1.38667 1.45545 1.57080 1.83442 2.03551 2.28058 2.47285 2.75727 2.89583 3.06699 3.16567 3.50979 3.67682 3.83910 3.92661 3.99539 4.13774 4.19249 4.27926 4.35301 4.37460 4.42231 4.56718 4.59326 4.64246 4.67620 4.76338 4.86049 4.93633 4.98989 5.00776 5.05700 5.10482 5.12040 5.17368 5.27803 5.30489 5.47345 5.55903 5.61557 5.69989 5.80929 5.88823 5.94741 6.12442 6.29937 6.72229 6.72485 7.35458 7.45656 7.66856 8.50773 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.002707 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.753931 B =10340.919393 C =11598.713938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.007 4.007 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.243 1.243 7 C -0.355 4.355 8 H 0.141 0.859 9 N -0.168 5.168 10 C -0.081 4.081 11 C -0.043 4.043 12 N -0.612 5.612 13 C 0.486 3.514 14 O -0.570 6.570 15 C 0.063 3.937 16 H 0.131 0.869 17 C -0.127 4.127 18 C -0.115 4.115 19 C 0.038 3.962 20 N -0.492 5.492 21 C 0.070 3.930 22 C -0.089 4.089 23 C -0.126 4.126 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.116 4.116 28 C -0.058 4.058 29 N -0.312 5.312 30 H 0.276 0.724 31 H 0.187 0.813 32 H 0.419 0.581 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.038 0.962 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.113 0.887 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 -21.268 6.811 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.166 1.166 7 C -0.486 4.486 8 H 0.158 0.842 9 N 0.063 4.937 10 C -0.231 4.231 11 C -0.149 4.149 12 N -0.257 5.257 13 C 0.274 3.726 14 O -0.449 6.449 15 C -0.048 4.048 16 H 0.149 0.851 17 C -0.166 4.166 18 C -0.153 4.153 19 C -0.089 4.089 20 N -0.216 5.216 21 C -0.057 4.057 22 C -0.089 4.089 23 C -0.144 4.144 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.135 4.135 28 C -0.234 4.234 29 N -0.144 5.144 30 H 0.086 0.914 31 H 0.204 0.796 32 H 0.256 0.744 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.131 0.869 42 H 0.159 0.841 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.140 0.860 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.159 -19.868 6.966 21.054 hybrid contribution 0.104 0.661 -0.523 0.849 sum -0.054 -19.207 6.443 20.259 Atomic orbital electron populations 1.70403 1.08483 1.29073 1.37327 1.26889 0.96444 1.04364 0.94108 0.84591 0.78503 0.74142 0.79042 1.18890 1.20247 1.16613 1.20609 0.93405 0.81050 1.53501 0.84198 1.44834 1.03554 1.05229 1.40091 1.22015 0.98823 0.84670 1.17615 1.17344 0.92684 0.84253 1.20634 1.42641 1.09968 1.03097 1.69988 1.21646 0.83734 0.90518 0.76744 1.90523 1.27117 1.76172 1.51118 1.22747 1.03118 0.87279 0.91673 0.85140 1.22777 1.00335 0.96831 0.96620 1.22705 1.01806 0.96923 0.93834 1.23192 0.92493 0.95291 0.97924 1.64304 1.28108 1.13151 1.16068 1.21602 0.98407 0.92511 0.93202 1.19814 0.94273 0.99904 0.94949 1.21185 0.93963 1.00125 0.99139 1.21394 1.00855 0.99315 0.92669 1.21489 0.94473 0.99704 0.98575 1.21442 0.95359 0.98916 0.98499 1.21197 1.00145 0.99430 0.92683 1.24094 0.98873 0.91108 1.09282 1.78142 0.92253 1.16591 1.27381 0.91437 0.79565 0.74354 0.92784 0.87592 0.88396 0.89251 0.89309 0.94397 0.92282 0.92262 0.86853 0.84103 0.83512 0.83891 0.85977 0.81885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.25 11.84 21.66 0.26 -47.99 16 2 C -0.01 -0.34 5.50 84.95 0.47 0.13 16 3 Si 1.02 38.95 29.56 68.60 2.03 40.98 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.24 -8.41 7.11 99.48 0.71 -7.70 16 7 C -0.35 -18.96 10.24 84.01 0.86 -18.10 16 8 H 0.14 6.47 7.84 -2.91 -0.02 6.45 16 9 N -0.17 -9.43 3.74 -190.02 -0.71 -10.14 16 10 C -0.08 -3.77 11.49 83.38 0.96 -2.81 16 11 C -0.04 -1.98 6.90 37.73 0.26 -1.72 16 12 N -0.61 -20.97 5.47 -303.92 -1.66 -22.63 16 13 C 0.49 16.44 5.05 87.66 0.44 16.88 16 14 O -0.57 -24.30 10.97 -3.11 -0.03 -24.33 16 15 C 0.06 1.50 3.84 44.51 0.17 1.67 16 16 H 0.13 2.32 7.94 -2.38 -0.02 2.30 16 17 C -0.13 -2.58 6.43 31.77 0.20 -2.37 16 18 C -0.11 -1.85 7.08 31.98 0.23 -1.63 16 19 C 0.04 0.82 5.38 86.78 0.47 1.28 16 20 N -0.49 -12.22 5.25 -869.41 -4.56 -16.79 16 21 C 0.07 2.15 3.88 85.56 0.33 2.49 16 22 C -0.09 -2.43 4.83 -19.86 -0.10 -2.53 16 23 C -0.13 -3.13 8.49 22.27 0.19 -2.95 16 24 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 25 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 26 C -0.12 -2.46 10.05 22.27 0.22 -2.24 16 27 C -0.12 -2.83 9.70 22.27 0.22 -2.62 16 28 C -0.06 -3.22 10.85 85.42 0.93 -2.29 16 29 N -0.31 -19.06 10.42 -56.47 -0.59 -19.65 16 30 H 0.28 14.84 8.31 -92.70 -0.77 14.07 16 31 H 0.19 6.83 8.06 -2.91 -0.02 6.81 16 32 H 0.42 10.51 8.68 -92.71 -0.80 9.70 16 33 H 0.05 1.42 7.53 -2.39 -0.02 1.40 16 34 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.04 0.93 6.26 -2.39 -0.01 0.91 16 39 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 40 H 0.06 2.24 5.28 -2.39 -0.01 2.23 16 41 H 0.11 2.86 7.12 -2.91 -0.02 2.84 16 42 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 43 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 45 H 0.12 2.84 8.06 -2.91 -0.02 2.81 16 46 H 0.16 9.15 5.92 -2.91 -0.02 9.14 16 Total: -1.00 -77.13 373.66 1.23 -75.90 By element: Atomic # 1 Polarization: 45.58 SS G_CDS: 0.21 Total: 45.79 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 6.30 Total: -21.13 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -7.27 Total: -117.20 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.03 Total: -24.33 kcal Atomic # 14 Polarization: 38.95 SS G_CDS: 2.03 Total: 40.98 kcal Total: -77.13 1.23 -75.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139278942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.284 kcal (2) G-P(sol) polarization free energy of solvation -77.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds