Wall clock time and date at job start Sat Apr 11 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 119.99602 * 2 1 4 4 H 1.48505 * 109.47340 * 269.99584 * 3 2 1 5 5 H 1.48495 * 109.47476 * 29.99425 * 3 2 1 6 6 H 1.48500 * 109.47231 * 149.99776 * 3 2 1 7 7 C 1.39933 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99799 * 196.86428 * 7 2 1 9 9 C 1.41436 * 120.00049 * 16.87106 * 7 2 1 10 10 C 1.40789 * 120.17532 * 205.32178 * 9 7 2 11 11 C 1.37712 * 120.03762 * 179.97438 * 10 9 7 12 12 C 1.38372 * 120.41298 * 359.79096 * 11 10 9 13 13 C 1.39880 * 120.35840 * 0.46400 * 12 11 10 14 14 C 1.47888 * 120.02605 * 179.78859 * 13 12 11 15 15 O 1.21550 * 120.00033 * 144.45058 * 14 13 12 16 16 N 1.34771 * 120.00154 * 324.45517 * 14 13 12 17 17 C 1.46932 * 120.62915 * 354.25437 * 16 14 13 18 18 C 1.53193 * 108.77493 * 233.58952 * 17 16 14 19 19 C 1.53035 * 109.31505 * 305.36442 * 18 17 16 20 20 C 1.52995 * 109.45978 * 181.38704 * 19 18 17 21 21 N 1.46504 * 109.47235 * 175.00205 * 20 19 18 22 22 C 1.35314 * 125.86984 * 125.00011 * 21 20 19 23 23 C 1.35342 * 106.17446 * 179.97438 * 22 21 20 24 24 N 1.33769 * 106.49916 * 0.02562 * 23 22 21 25 25 N 1.28631 * 108.88352 * 359.97438 * 24 23 22 26 26 C 1.53045 * 109.53614 * 61.36733 * 19 18 17 27 27 C 1.46924 * 120.63337 * 174.24132 * 16 14 13 28 28 C 1.39034 * 119.94606 * 359.51418 * 13 12 11 29 29 H 0.96996 * 120.00177 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.98190 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.79303 * 180.02562 * 11 10 9 32 32 H 1.08002 * 119.81940 * 180.23672 * 12 11 10 33 33 H 1.09000 * 109.58336 * 113.79971 * 17 16 14 34 34 H 1.09001 * 109.70419 * 353.45265 * 17 16 14 35 35 H 1.09001 * 109.49238 * 185.41315 * 18 17 16 36 36 H 1.09002 * 109.49418 * 65.32252 * 18 17 16 37 37 H 1.08998 * 109.46233 * 301.35896 * 19 18 17 38 38 H 1.09003 * 109.47481 * 55.00099 * 20 19 18 39 39 H 1.09008 * 109.47230 * 294.99914 * 20 19 18 40 40 H 1.08010 * 126.91058 * 359.97438 * 22 21 20 41 41 H 1.08009 * 126.74995 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.49922 * 58.58475 * 26 19 18 43 43 H 1.08996 * 109.49789 * 178.67921 * 26 19 18 44 44 H 1.08998 * 109.58283 * 246.19773 * 27 16 14 45 45 H 1.08998 * 109.58326 * 6.47339 * 27 16 14 46 46 H 1.08003 * 120.19938 * 180.27394 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.6999 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0531 -1.2318 0.2719 9 6 1.3465 -2.4105 -0.3544 10 6 1.8170 -3.6474 0.1261 11 6 1.1704 -4.8128 -0.2209 12 6 0.0544 -4.7780 -1.0381 13 6 -0.4244 -3.5590 -1.5294 14 6 -1.6151 -3.5308 -2.4061 15 8 -2.4049 -2.6102 -2.3290 16 7 -1.8244 -4.5260 -3.2905 17 6 -0.8182 -5.5790 -3.4846 18 6 -0.4794 -5.6684 -4.9759 19 6 -1.7674 -5.8747 -5.7761 20 6 -1.4292 -5.9991 -7.2631 21 7 -2.6457 -6.3152 -8.0158 22 6 -3.1319 -5.6155 -9.0670 23 6 -4.2613 -6.2529 -9.4542 24 7 -4.4091 -7.2973 -8.6316 25 7 -3.4355 -7.3063 -7.7910 26 6 -2.6991 -4.6794 -5.5634 27 6 -3.0632 -4.5788 -4.0788 28 6 0.2165 -2.3733 -1.1882 29 1 -0.4850 0.8400 -0.0004 30 1 2.6849 -3.6823 0.7678 31 1 1.5345 -5.7595 0.1503 32 1 -0.4475 -5.6975 -1.3011 33 1 -1.2179 -6.5337 -3.1427 34 1 0.0816 -5.3362 -2.9192 35 1 0.1934 -6.5089 -5.1463 36 1 0.0035 -4.7448 -5.2952 37 1 -2.2625 -6.7854 -5.4390 38 1 -0.6977 -6.7947 -7.4041 39 1 -1.0148 -5.0567 -7.6215 40 1 -2.7047 -4.7270 -9.5082 41 1 -4.9151 -5.9729 -10.2671 42 1 -2.1955 -3.7651 -5.8772 43 1 -3.6063 -4.8159 -6.1520 44 1 -3.6459 -5.4519 -3.7854 45 1 -3.6464 -3.6747 -3.9038 46 1 -0.1523 -1.4294 -1.5616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179192337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:02 Heat of formation + Delta-G solvation = 86.821493 kcal Electronic energy + Delta-G solvation = -29000.863692 eV Core-core repulsion = 25085.434872 eV Total energy + Delta-G solvation = -3915.428820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.47284 -40.05038 -37.96722 -36.95081 -35.17902 -33.83798 -32.61158 -31.48997 -31.24520 -29.89356 -29.52388 -28.05938 -25.48592 -24.53902 -23.51231 -22.96138 -22.25125 -21.46199 -20.97353 -20.30851 -18.83292 -17.79340 -17.62426 -16.70963 -16.04945 -15.78423 -15.22815 -15.18739 -14.99164 -14.91873 -14.71629 -14.44632 -13.95923 -13.80990 -13.53704 -13.28935 -12.91116 -12.85580 -12.55721 -12.42759 -12.12331 -11.95722 -11.72506 -11.49446 -11.36450 -11.21929 -11.17289 -11.07283 -10.82409 -10.75816 -10.72704 -10.40597 -10.21524 -10.11035 -9.74187 -9.62237 -9.28798 -8.98077 -8.37409 -7.65734 -7.54740 -6.83435 -4.47043 1.37684 2.09415 2.23518 2.37111 2.74698 3.03443 3.06652 3.09282 3.34458 3.65722 3.86994 3.99503 4.23655 4.30329 4.50638 4.52772 4.68607 4.79914 4.87444 4.98223 5.04335 5.10740 5.23250 5.31148 5.44793 5.49631 5.50398 5.59460 5.70021 5.71646 5.88876 5.91176 5.96271 5.98787 6.09313 6.16271 6.27106 6.32769 6.64206 6.83656 6.93395 6.99517 7.15621 7.32712 7.60862 7.72346 7.82303 7.94256 8.11073 8.29723 8.44535 8.74757 8.77153 8.82870 10.10540 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.002458 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.237167 B =11390.304141 C =11972.042225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.102 3.898 10 C -0.212 4.212 11 C -0.097 4.097 12 C -0.226 4.226 13 C -0.121 4.121 14 C 0.567 3.433 15 O -0.542 6.542 16 N -0.616 5.616 17 C 0.096 3.904 18 C -0.128 4.128 19 C -0.100 4.100 20 C 0.117 3.883 21 N -0.284 5.284 22 C -0.051 4.051 23 C -0.055 4.055 24 N -0.276 5.276 25 N -0.082 5.082 26 C -0.126 4.126 27 C 0.115 3.885 28 C -0.100 4.100 29 H 0.285 0.715 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.063 0.937 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.189 0.811 41 H 0.188 0.812 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.092 0.908 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.152 -8.688 -15.618 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.232 4.232 11 C -0.115 4.115 12 C -0.246 4.246 13 C -0.124 4.124 14 C 0.359 3.641 15 O -0.419 6.419 16 N -0.351 5.351 17 C -0.027 4.027 18 C -0.167 4.167 19 C -0.120 4.120 20 C -0.004 4.004 21 N -0.078 5.078 22 C -0.202 4.202 23 C -0.213 4.213 24 N -0.142 5.142 25 N -0.062 5.062 26 C -0.165 4.165 27 C -0.008 4.008 28 C -0.120 4.120 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.206 0.794 41 H 0.205 0.795 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.110 0.890 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.056 -9.243 -14.649 17.443 hybrid contribution 0.563 1.742 -0.729 1.970 sum -1.493 -7.501 -15.378 17.175 Atomic orbital electron populations 1.69805 1.07487 1.29785 1.33474 1.25980 0.94787 1.01541 0.92426 0.86274 0.80406 0.80493 0.79383 1.19218 1.20191 1.18542 1.19598 0.97881 0.90913 1.40506 0.90064 1.17581 0.91139 0.92481 0.88901 1.21105 1.03559 0.92811 1.05693 1.20463 0.96086 0.96754 0.98210 1.20516 1.01098 0.95029 1.07910 1.19408 0.96174 0.95383 1.01460 1.19007 0.86010 0.80085 0.78988 1.90709 1.47499 1.34344 1.69321 1.47982 1.19046 1.27010 1.41045 1.22254 0.94492 0.90647 0.95291 1.21971 0.95731 1.02996 0.95964 1.21524 0.98129 1.00629 0.91674 1.22356 0.82136 1.03567 0.92291 1.47551 1.19979 1.18339 1.21901 1.23719 0.99312 1.02763 0.94439 1.23617 0.98839 0.95435 1.03385 1.75134 1.15979 1.19473 1.03600 1.78295 0.99168 1.08367 1.20388 1.21943 0.99281 0.97877 0.97387 1.21396 0.87118 1.03038 0.89241 1.21518 0.97019 0.95726 0.97716 0.90397 0.88627 0.88828 0.88280 0.91902 0.86040 0.90231 0.90833 0.89024 0.87998 0.87503 0.79437 0.79537 0.91182 0.91620 0.92015 0.88971 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.46 10.95 55.55 0.61 -19.85 16 2 C 0.07 1.78 5.15 -17.34 -0.09 1.69 16 3 Si 0.91 18.31 29.59 -169.99 -5.03 13.28 16 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.46 -11.74 9.05 -37.73 -0.34 -12.08 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 9 C 0.10 2.59 5.57 -106.87 -0.59 2.00 16 10 C -0.21 -4.83 9.78 -38.81 -0.38 -5.21 16 11 C -0.10 -1.97 10.01 -39.72 -0.40 -2.36 16 12 C -0.23 -4.52 7.36 -38.92 -0.29 -4.81 16 13 C -0.12 -2.74 5.28 -105.04 -0.55 -3.30 16 14 C 0.57 12.12 7.38 -12.31 -0.09 12.03 16 15 O -0.54 -13.49 16.24 5.32 0.09 -13.40 16 16 N -0.62 -9.92 2.97 -173.87 -0.52 -10.44 16 17 C 0.10 1.22 4.77 -3.71 -0.02 1.20 16 18 C -0.13 -1.18 5.36 -26.61 -0.14 -1.32 16 19 C -0.10 -0.88 2.20 -90.58 -0.20 -1.08 16 20 C 0.12 0.79 5.85 -4.04 -0.02 0.77 16 21 N -0.28 -2.58 2.87 -61.26 -0.18 -2.75 16 22 C -0.05 -0.38 11.57 -17.05 -0.20 -0.58 16 23 C -0.06 -0.50 12.05 -17.74 -0.21 -0.71 16 24 N -0.28 -3.49 12.41 30.23 0.38 -3.11 16 25 N -0.08 -1.01 12.82 60.35 0.77 -0.23 16 26 C -0.13 -1.36 5.26 -26.61 -0.14 -1.50 16 27 C 0.12 1.60 6.44 -3.71 -0.02 1.58 16 28 C -0.10 -2.56 8.25 -38.44 -0.32 -2.88 16 29 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 30 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 31 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.10 1.70 6.04 -52.49 -0.32 1.39 16 33 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 34 H 0.12 1.76 4.47 -51.93 -0.23 1.53 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.91 8.00 -51.93 -0.42 0.49 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.51 8.07 -51.92 -0.42 0.09 16 40 H 0.19 0.71 8.06 -52.48 -0.42 0.29 16 41 H 0.19 1.06 8.06 -52.48 -0.42 0.63 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.72 7.71 -51.93 -0.40 0.32 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.09 1.47 6.99 -51.93 -0.36 1.11 16 46 H 0.13 3.56 6.12 -52.48 -0.32 3.24 16 LS Contribution 375.09 15.07 5.65 5.65 Total: -1.00 -32.15 375.09 -8.48 -40.62 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.24 Total: 6.81 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -4.01 Total: -16.57 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 1.06 Total: -36.39 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.03 Total: 13.28 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.15 -8.48 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179192337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.446 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds