Wall clock time and date at job start Sat Apr 11 2020 06:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 119.99602 * 2 1 4 4 H 1.48505 * 109.47340 * 269.99584 * 3 2 1 5 5 H 1.48495 * 109.47476 * 29.99425 * 3 2 1 6 6 H 1.48500 * 109.47231 * 149.99776 * 3 2 1 7 7 C 1.39933 * 120.00143 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99799 * 196.86428 * 7 2 1 9 9 C 1.41436 * 120.00049 * 16.87106 * 7 2 1 10 10 C 1.40789 * 120.17532 * 205.32178 * 9 7 2 11 11 C 1.37712 * 120.03762 * 179.97438 * 10 9 7 12 12 C 1.38372 * 120.41298 * 359.79096 * 11 10 9 13 13 C 1.39880 * 120.35840 * 0.46400 * 12 11 10 14 14 C 1.47888 * 120.02605 * 179.78859 * 13 12 11 15 15 O 1.21550 * 120.00033 * 144.45058 * 14 13 12 16 16 N 1.34771 * 120.00154 * 324.45517 * 14 13 12 17 17 C 1.46932 * 120.62915 * 354.25437 * 16 14 13 18 18 C 1.53193 * 108.77493 * 233.58952 * 17 16 14 19 19 C 1.53035 * 109.31505 * 305.36442 * 18 17 16 20 20 C 1.52995 * 109.45978 * 181.38704 * 19 18 17 21 21 N 1.46504 * 109.47235 * 175.00205 * 20 19 18 22 22 C 1.35314 * 125.86984 * 125.00011 * 21 20 19 23 23 C 1.35342 * 106.17446 * 179.97438 * 22 21 20 24 24 N 1.33769 * 106.49916 * 0.02562 * 23 22 21 25 25 N 1.28631 * 108.88352 * 359.97438 * 24 23 22 26 26 C 1.53045 * 109.53614 * 61.36733 * 19 18 17 27 27 C 1.46924 * 120.63337 * 174.24132 * 16 14 13 28 28 C 1.39034 * 119.94606 * 359.51418 * 13 12 11 29 29 H 0.96996 * 120.00177 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.98190 * 0.02562 * 10 9 7 31 31 H 1.08006 * 119.79303 * 180.02562 * 11 10 9 32 32 H 1.08002 * 119.81940 * 180.23672 * 12 11 10 33 33 H 1.09000 * 109.58336 * 113.79971 * 17 16 14 34 34 H 1.09001 * 109.70419 * 353.45265 * 17 16 14 35 35 H 1.09001 * 109.49238 * 185.41315 * 18 17 16 36 36 H 1.09002 * 109.49418 * 65.32252 * 18 17 16 37 37 H 1.08998 * 109.46233 * 301.35896 * 19 18 17 38 38 H 1.09003 * 109.47481 * 55.00099 * 20 19 18 39 39 H 1.09008 * 109.47230 * 294.99914 * 20 19 18 40 40 H 1.08010 * 126.91058 * 359.97438 * 22 21 20 41 41 H 1.08009 * 126.74995 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.49922 * 58.58475 * 26 19 18 43 43 H 1.08996 * 109.49789 * 178.67921 * 26 19 18 44 44 H 1.08998 * 109.58283 * 246.19773 * 27 16 14 45 45 H 1.08998 * 109.58326 * 6.47339 * 27 16 14 46 46 H 1.08003 * 120.19938 * 180.27394 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4396 2.6527 0.6999 6 1 3.5397 1.4403 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0531 -1.2318 0.2719 9 6 1.3465 -2.4105 -0.3544 10 6 1.8170 -3.6474 0.1261 11 6 1.1704 -4.8128 -0.2209 12 6 0.0544 -4.7780 -1.0381 13 6 -0.4244 -3.5590 -1.5294 14 6 -1.6151 -3.5308 -2.4061 15 8 -2.4049 -2.6102 -2.3290 16 7 -1.8244 -4.5260 -3.2905 17 6 -0.8182 -5.5790 -3.4846 18 6 -0.4794 -5.6684 -4.9759 19 6 -1.7674 -5.8747 -5.7761 20 6 -1.4292 -5.9991 -7.2631 21 7 -2.6457 -6.3152 -8.0158 22 6 -3.1319 -5.6155 -9.0670 23 6 -4.2613 -6.2529 -9.4542 24 7 -4.4091 -7.2973 -8.6316 25 7 -3.4355 -7.3063 -7.7910 26 6 -2.6991 -4.6794 -5.5634 27 6 -3.0632 -4.5788 -4.0788 28 6 0.2165 -2.3733 -1.1882 29 1 -0.4850 0.8400 -0.0004 30 1 2.6849 -3.6823 0.7678 31 1 1.5345 -5.7595 0.1503 32 1 -0.4475 -5.6975 -1.3011 33 1 -1.2179 -6.5337 -3.1427 34 1 0.0816 -5.3362 -2.9192 35 1 0.1934 -6.5089 -5.1463 36 1 0.0035 -4.7448 -5.2952 37 1 -2.2625 -6.7854 -5.4390 38 1 -0.6977 -6.7947 -7.4041 39 1 -1.0148 -5.0567 -7.6215 40 1 -2.7047 -4.7270 -9.5082 41 1 -4.9151 -5.9729 -10.2671 42 1 -2.1955 -3.7651 -5.8772 43 1 -3.6063 -4.8159 -6.1520 44 1 -3.6459 -5.4519 -3.7854 45 1 -3.6464 -3.6747 -3.9038 46 1 -0.1523 -1.4294 -1.5616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179192337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:01 Heat of formation + Delta-G solvation = 67.550331 kcal Electronic energy + Delta-G solvation = -29001.699352 eV Core-core repulsion = 25085.434872 eV Total energy + Delta-G solvation = -3916.264480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.14035 -41.45369 -39.29001 -38.56279 -36.21991 -35.57376 -33.68362 -32.67649 -31.89291 -31.44388 -31.26489 -28.94890 -27.29635 -25.68669 -24.59485 -23.70469 -23.39754 -22.82009 -22.31645 -21.35012 -20.23128 -19.27490 -18.42350 -17.74503 -17.38081 -17.30944 -16.71222 -16.56009 -16.26829 -15.82538 -15.58777 -15.35055 -15.16718 -15.09535 -14.72517 -14.48415 -14.43663 -14.24587 -13.94734 -13.64132 -13.50157 -13.13924 -12.87615 -12.81171 -12.65423 -12.56362 -12.32791 -12.25951 -12.08838 -11.92724 -11.83632 -11.67324 -11.58718 -11.47480 -11.09223 -10.94589 -10.65446 -10.27133 -9.75598 -9.39706 -9.35001 -8.65125 -6.38298 0.46839 0.74221 0.99689 1.36212 1.47050 1.50657 1.54094 1.68477 1.90688 2.06529 2.18598 2.72968 3.36522 3.51853 3.64070 3.68396 3.74667 3.84285 4.01350 4.09705 4.23161 4.25168 4.35831 4.39089 4.40877 4.47991 4.50347 4.61796 4.66649 4.75090 4.79939 4.86286 4.88835 4.91376 5.00379 5.05943 5.09629 5.20856 5.30016 5.31501 5.36744 5.51220 5.61593 5.74467 5.85200 5.96073 6.04312 6.27949 6.37823 6.61434 6.88337 6.94756 7.20816 7.59660 8.30693 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018622 B = 0.002458 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.237167 B =11390.304141 C =11972.042225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.028 3.972 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.250 1.250 7 C -0.496 4.496 8 H 0.085 0.915 9 C 0.070 3.930 10 C -0.216 4.216 11 C -0.093 4.093 12 C -0.200 4.200 13 C -0.129 4.129 14 C 0.559 3.441 15 O -0.593 6.593 16 N -0.602 5.602 17 C 0.085 3.915 18 C -0.119 4.119 19 C -0.091 4.091 20 C 0.116 3.884 21 N -0.283 5.283 22 C -0.039 4.039 23 C -0.069 4.069 24 N -0.318 5.318 25 N -0.120 5.120 26 C -0.115 4.115 27 C 0.111 3.889 28 C -0.134 4.134 29 H 0.285 0.715 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.123 0.877 39 H 0.133 0.867 40 H 0.228 0.772 41 H 0.212 0.788 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 -10.775 -17.334 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.187 4.187 3 Si 0.803 3.197 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.525 4.525 8 H 0.103 0.897 9 C 0.068 3.932 10 C -0.236 4.236 11 C -0.111 4.111 12 C -0.220 4.220 13 C -0.132 4.132 14 C 0.351 3.649 15 O -0.475 6.475 16 N -0.334 5.334 17 C -0.036 4.036 18 C -0.157 4.157 19 C -0.110 4.110 20 C -0.004 4.004 21 N -0.076 5.076 22 C -0.190 4.190 23 C -0.227 4.227 24 N -0.183 5.183 25 N -0.099 5.099 26 C -0.153 4.153 27 C -0.012 4.012 28 C -0.154 4.154 29 H 0.096 0.904 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.133 0.867 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.244 0.756 41 H 0.228 0.772 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.419 -11.414 -16.382 19.971 hybrid contribution 0.002 2.169 -0.264 2.185 sum -0.417 -9.245 -16.646 19.045 Atomic orbital electron populations 1.69923 1.09263 1.30510 1.35684 1.26871 0.95358 1.05013 0.91417 0.85191 0.79207 0.75796 0.79485 1.18804 1.19803 1.17338 1.19868 0.98240 0.92000 1.42391 0.89704 1.17922 0.91728 0.93934 0.89633 1.21397 1.03954 0.92786 1.05414 1.20924 0.95349 0.97705 0.97116 1.20951 1.00278 0.95203 1.05519 1.19653 0.96316 0.95541 1.01660 1.18963 0.85297 0.80790 0.79884 1.90678 1.49043 1.36649 1.71082 1.48004 1.20200 1.26028 1.39182 1.22523 0.92898 0.90090 0.98123 1.21912 0.96381 1.04386 0.93035 1.21384 0.97166 0.98940 0.93508 1.22537 0.81668 1.05799 0.90376 1.47753 1.20006 1.17730 1.22158 1.24362 0.98387 1.02990 0.93290 1.24183 0.99972 0.94832 1.03700 1.75071 1.16975 1.21429 1.04856 1.78227 1.00152 1.10106 1.21409 1.21822 0.99950 0.99006 0.94526 1.21545 0.86103 1.02240 0.91274 1.21308 0.98686 0.95616 0.99839 0.90431 0.87370 0.84309 0.84531 0.89530 0.87548 0.86707 0.91180 0.89640 0.85857 0.84874 0.75566 0.77163 0.91444 0.91533 0.90670 0.91797 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.30 10.95 21.82 0.24 -46.06 16 2 C 0.03 1.44 5.15 85.25 0.44 1.88 16 3 Si 0.98 38.91 29.59 68.60 2.03 40.94 16 4 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 6 H -0.25 -9.31 7.11 99.48 0.71 -8.61 16 7 C -0.50 -26.38 9.05 23.47 0.21 -26.16 16 8 H 0.08 4.24 7.90 -2.91 -0.02 4.22 16 9 C 0.07 3.71 5.57 -21.32 -0.12 3.59 16 10 C -0.22 -9.71 9.78 22.77 0.22 -9.49 16 11 C -0.09 -3.51 10.01 22.18 0.22 -3.29 16 12 C -0.20 -7.58 7.36 22.70 0.17 -7.41 16 13 C -0.13 -5.92 5.28 -20.13 -0.11 -6.03 16 14 C 0.56 24.56 7.38 86.80 0.64 25.20 16 15 O -0.59 -31.38 16.24 -3.87 -0.06 -31.44 16 16 N -0.60 -18.90 2.97 -822.27 -2.44 -21.34 16 17 C 0.08 1.90 4.77 86.36 0.41 2.31 16 18 C -0.12 -1.74 5.36 30.67 0.16 -1.57 16 19 C -0.09 -1.30 2.20 -10.77 -0.02 -1.32 16 20 C 0.12 1.09 5.85 86.38 0.50 1.59 16 21 N -0.28 -4.30 2.87 -347.72 -1.00 -5.29 16 22 C -0.04 -0.46 11.57 83.49 0.97 0.51 16 23 C -0.07 -1.10 12.05 83.73 1.01 -0.09 16 24 N -0.32 -7.74 12.41 -58.26 -0.72 -8.46 16 25 N -0.12 -2.74 12.82 37.02 0.47 -2.27 16 26 C -0.11 -2.28 5.26 30.67 0.16 -2.12 16 27 C 0.11 3.04 6.44 86.36 0.56 3.59 16 28 C -0.13 -7.25 8.25 23.01 0.19 -7.06 16 29 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 30 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 32 H 0.14 4.13 6.04 -2.91 -0.02 4.12 16 33 H 0.09 1.60 8.05 -2.39 -0.02 1.58 16 34 H 0.11 2.75 4.47 -2.39 -0.01 2.74 16 35 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.42 8.00 -2.39 -0.02 1.40 16 38 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.13 0.60 8.07 -2.38 -0.02 0.58 16 40 H 0.23 0.64 8.06 -2.91 -0.02 0.62 16 41 H 0.21 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.34 7.71 -2.39 -0.02 1.33 16 44 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.06 2.13 6.99 -2.39 -0.02 2.11 16 46 H 0.09 5.59 6.12 -2.91 -0.02 5.58 16 Total: -1.00 -78.11 375.09 5.13 -72.97 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 1.00 Total: 26.82 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: 5.62 Total: -25.86 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -3.45 Total: -83.43 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: -0.06 Total: -31.44 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Total: -78.11 5.13 -72.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179192337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.523 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds