Wall clock time and date at job start Sat Apr 11 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86801 * 120.00288 * 2 1 4 4 H 1.48500 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46729 * 299.99820 * 3 2 1 6 6 H 1.48493 * 109.46932 * 59.99748 * 3 2 1 7 7 C 1.40169 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99469 * 180.02562 * 7 2 1 9 9 C 1.41530 * 120.00073 * 359.97438 * 7 2 1 10 10 O 1.21812 * 120.00026 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99854 * 179.97438 * 9 7 2 12 12 C 1.38583 * 119.99876 * 179.97438 * 11 9 7 13 13 C 1.36675 * 126.31732 * 0.19174 * 12 11 9 14 14 C 1.39464 * 107.84016 * 180.25760 * 13 12 11 15 15 N 1.30996 * 108.53947 * 359.74156 * 14 13 12 16 16 N 1.36060 * 126.31597 * 179.97438 * 12 11 9 17 17 C 1.46502 * 126.11881 * 0.02562 * 16 12 11 18 18 H 1.09005 * 110.64229 * 358.01948 * 17 16 12 19 19 C 1.54594 * 110.72227 * 121.16627 * 17 16 12 20 20 C 1.53997 * 105.13868 * 140.49448 * 19 17 16 21 21 N 1.47904 * 107.05501 * 1.23144 * 20 19 17 22 22 C 1.46907 * 110.99339 * 214.15047 * 21 20 19 23 23 C 1.50702 * 109.46818 * 69.87861 * 22 21 20 24 24 C 1.38234 * 120.00257 * 89.99881 * 23 22 21 25 25 C 1.38238 * 119.99675 * 180.25732 * 24 23 22 26 26 C 1.38228 * 120.00114 * 359.50218 * 25 24 23 27 27 C 1.38234 * 120.00051 * 0.47390 * 26 25 24 28 28 C 1.38235 * 119.99522 * 269.96894 * 23 22 21 29 29 C 1.48528 * 105.81827 * 334.66533 * 21 20 19 30 30 H 0.97002 * 120.00065 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99492 * 0.02562 * 11 9 7 32 32 H 1.07999 * 126.08221 * 359.97438 * 13 12 11 33 33 H 1.08000 * 125.72900 * 179.73591 * 14 13 12 34 34 H 1.08999 * 110.31133 * 21.58588 * 19 17 16 35 35 H 1.08998 * 110.31495 * 259.41209 * 19 17 16 36 36 H 1.08999 * 109.91837 * 241.87297 * 20 19 17 37 37 H 1.09002 * 110.07694 * 120.67361 * 20 19 17 38 38 H 1.08993 * 109.47718 * 309.87307 * 22 21 20 39 39 H 1.08998 * 109.46552 * 189.87129 * 22 21 20 40 40 H 1.08002 * 119.99744 * 359.97115 * 24 23 22 41 41 H 1.08004 * 119.99577 * 179.72816 * 25 24 23 42 42 H 1.07999 * 119.99927 * 180.26554 * 26 25 24 43 43 H 1.08001 * 120.00294 * 179.78842 * 27 26 25 44 44 H 1.07996 * 120.00471 * 0.02562 * 28 23 22 45 45 H 1.08999 * 110.66377 * 157.64689 * 29 21 20 46 46 H 1.09004 * 110.66881 * 280.77179 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7002 1.3463 0.0006 5 1 1.8815 2.3963 -1.2126 6 1 1.8815 2.3964 1.2124 7 6 2.0069 -1.2140 0.0005 8 1 3.0869 -1.2139 0.0010 9 6 1.2992 -2.4396 0.0016 10 8 0.0810 -2.4395 0.0016 11 7 1.9730 -3.6068 0.0016 12 6 1.2800 -4.8070 0.0032 13 6 -0.0784 -4.9573 0.0012 14 6 -0.3571 -6.3238 0.0099 15 7 0.7766 -6.9801 0.0113 16 7 1.8265 -6.0530 0.0030 17 6 3.2571 -6.3685 0.0014 18 1 3.8519 -5.4558 -0.0348 19 6 3.6315 -7.2168 1.2384 20 6 4.6465 -8.2538 0.7228 21 7 4.8525 -7.9808 -0.7162 22 6 5.0824 -9.2262 -1.4606 23 6 3.8051 -10.0244 -1.5108 24 6 2.9144 -9.8386 -2.5514 25 6 1.7403 -10.5670 -2.5946 26 6 1.4618 -11.4885 -1.6026 27 6 2.3527 -11.6747 -0.5623 28 6 3.5246 -10.9429 -0.5165 29 6 3.6151 -7.3034 -1.1810 30 1 -0.4850 0.8401 0.0004 31 1 2.9430 -3.6068 0.0013 32 1 -0.8066 -4.1597 -0.0015 33 1 -1.3422 -6.7665 0.0148 34 1 2.7483 -7.7171 1.6356 35 1 4.0878 -6.5890 2.0037 36 1 4.2498 -9.2601 0.8568 37 1 5.5902 -8.1524 1.2588 38 1 5.8563 -9.8099 -0.9622 39 1 5.4029 -8.9892 -2.4750 40 1 3.1337 -9.1210 -3.3282 41 1 1.0423 -10.4186 -3.4053 42 1 0.5465 -12.0606 -1.6387 43 1 2.1335 -12.3923 0.2146 44 1 4.2205 -11.0881 0.2965 45 1 3.8095 -6.7246 -2.0839 46 1 2.8201 -8.0293 -1.3519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185258893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:06 Heat of formation + Delta-G solvation = 89.138289 kcal Electronic energy + Delta-G solvation = -29476.989253 eV Core-core repulsion = 25561.660897 eV Total energy + Delta-G solvation = -3915.328356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.76400 -40.00991 -38.10445 -37.48111 -33.97443 -33.49180 -32.47925 -31.35162 -31.06101 -29.54914 -28.55062 -27.92239 -26.32743 -25.54339 -22.90867 -22.25475 -21.61986 -21.57676 -20.62359 -19.70447 -18.98195 -17.76100 -17.00510 -16.74788 -16.01329 -15.58996 -15.49559 -15.27893 -15.05230 -14.45598 -14.27191 -14.11343 -13.82671 -13.67934 -13.51368 -13.10611 -12.96750 -12.72747 -12.65389 -12.37902 -12.22499 -11.77553 -11.70904 -11.50303 -11.42494 -11.41388 -11.29131 -11.18439 -11.12000 -10.82232 -10.71643 -10.38667 -9.77894 -9.74697 -9.01900 -8.99499 -8.88780 -8.60095 -8.17548 -7.74661 -6.94435 -6.44530 -4.98100 1.18024 1.26598 2.64413 2.84446 3.01595 3.10133 3.14485 3.60991 3.75833 3.91147 4.00562 4.38427 4.40782 4.52242 4.54035 4.67133 4.72713 4.84475 4.89037 4.95714 5.05877 5.14790 5.26181 5.34052 5.46042 5.51372 5.60544 5.65984 5.66676 5.77896 5.83799 5.86696 5.87368 5.96933 5.98955 6.28845 6.30106 6.38324 6.40154 6.54434 6.67024 6.76981 6.85432 7.07727 7.13258 7.21698 7.66378 7.74510 7.97936 8.17106 8.51562 8.73276 9.19676 10.30741 10.50129 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002744 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.116501 B =10200.140237 C =10954.400452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.088 3.912 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.548 3.452 10 O -0.551 6.551 11 N -0.672 5.672 12 C 0.346 3.654 13 C -0.306 4.306 14 C 0.055 3.945 15 N -0.324 5.324 16 N -0.400 5.400 17 C 0.167 3.833 18 H 0.103 0.897 19 C -0.137 4.137 20 C 0.030 3.970 21 N -0.503 5.503 22 C 0.084 3.916 23 C -0.122 4.122 24 C -0.103 4.103 25 C -0.115 4.115 26 C -0.115 4.115 27 C -0.119 4.119 28 C -0.110 4.110 29 C 0.017 3.983 30 H 0.274 0.726 31 H 0.388 0.612 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.083 0.917 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 -18.833 -1.816 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.135 4.135 3 Si 0.739 3.261 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.357 3.643 10 O -0.432 6.432 11 N -0.319 5.319 12 C 0.125 3.875 13 C -0.338 4.338 14 C -0.130 4.130 15 N -0.146 5.146 16 N -0.191 5.191 17 C 0.063 3.937 18 H 0.121 0.879 19 C -0.176 4.176 20 C -0.098 4.098 21 N -0.226 5.226 22 C -0.044 4.044 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.137 4.137 28 C -0.129 4.129 29 C -0.111 4.111 30 H 0.085 0.915 31 H 0.221 0.779 32 H 0.190 0.810 33 H 0.188 0.812 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.101 0.899 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 9.127 -19.421 -1.893 21.542 hybrid contribution -0.141 1.070 0.159 1.091 sum 8.986 -18.352 -1.734 20.507 Atomic orbital electron populations 1.70000 1.07286 1.28005 1.31823 1.25754 0.94691 1.00704 0.92395 0.86190 0.80497 0.80935 0.78508 1.18522 1.19846 1.19862 1.19937 0.94383 0.89561 1.53122 0.91028 1.16991 0.87670 0.81215 0.78403 1.90592 1.13411 1.84867 1.54312 1.43845 1.09124 1.02941 1.75973 1.18662 0.91728 0.80284 0.96868 1.21761 0.93645 0.96724 1.21713 1.23570 0.96733 0.93520 0.99223 1.77215 0.93778 1.13734 1.29873 1.48610 1.04812 1.02434 1.63227 1.21773 0.77333 0.98969 0.95627 0.87941 1.22738 0.99736 0.97628 0.97486 1.22967 0.99041 0.98630 0.89122 1.65158 1.34378 1.20058 1.02957 1.21371 0.93619 0.89140 1.00295 1.20512 0.98438 0.97740 0.95639 1.21047 0.94353 0.98845 0.97884 1.21135 0.96950 0.96166 0.99005 1.21133 0.99170 0.98375 0.94630 1.21109 0.94515 0.99749 0.98352 1.21019 0.97583 0.96242 0.98033 1.23766 0.92358 0.97546 0.97423 0.91509 0.77901 0.81048 0.81203 0.89813 0.90517 0.92500 0.90091 0.89801 0.89567 0.86285 0.86131 0.86242 0.86275 0.86352 0.89862 0.89712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.90 11.72 55.56 0.65 -20.25 16 2 C 0.09 2.30 5.50 -17.34 -0.10 2.21 16 3 Si 0.91 18.85 29.56 -169.99 -5.02 13.82 16 4 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.53 -14.16 9.30 -37.60 -0.35 -14.50 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 9 C 0.55 14.95 7.52 -15.00 -0.11 14.84 16 10 O -0.55 -16.83 11.98 5.09 0.06 -16.77 16 11 N -0.67 -15.17 5.37 -13.99 -0.08 -15.25 16 12 C 0.35 7.62 7.68 -153.10 -1.18 6.45 16 13 C -0.31 -7.00 9.65 -39.69 -0.38 -7.38 16 14 C 0.05 1.05 11.99 -17.45 -0.21 0.84 16 15 N -0.32 -6.18 11.96 30.57 0.37 -5.81 16 16 N -0.40 -7.47 3.43 -52.00 -0.18 -7.65 16 17 C 0.17 2.50 3.91 -66.08 -0.26 2.25 16 18 H 0.10 1.47 6.93 -51.93 -0.36 1.11 16 19 C -0.14 -1.79 6.65 -25.37 -0.17 -1.96 16 20 C 0.03 0.33 6.46 -2.75 -0.02 0.31 16 21 N -0.50 -5.68 5.54 -231.89 -1.28 -6.96 16 22 C 0.08 0.80 5.69 -4.97 -0.03 0.77 16 23 C -0.12 -1.28 3.96 -104.62 -0.41 -1.70 16 24 C -0.10 -1.14 7.49 -39.58 -0.30 -1.43 16 25 C -0.11 -1.24 10.05 -39.59 -0.40 -1.64 16 26 C -0.11 -1.18 10.05 -39.59 -0.40 -1.58 16 27 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 28 C -0.11 -1.11 8.19 -39.58 -0.32 -1.44 16 29 C 0.02 0.23 5.71 -1.91 -0.01 0.22 16 30 H 0.27 6.91 8.29 -40.82 -0.34 6.58 16 31 H 0.39 7.48 7.56 -40.82 -0.31 7.17 16 32 H 0.17 4.44 5.82 -52.49 -0.31 4.13 16 33 H 0.17 2.66 8.06 -52.49 -0.42 2.24 16 34 H 0.08 1.25 7.79 -51.93 -0.40 0.85 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.60 4.86 -51.93 -0.25 0.35 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.68 8.03 -51.93 -0.42 0.27 16 39 H 0.09 0.77 8.09 -51.93 -0.42 0.35 16 40 H 0.12 1.23 8.05 -52.49 -0.42 0.81 16 41 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 1.01 7.17 -52.49 -0.38 0.63 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.08 1.25 4.60 -51.93 -0.24 1.01 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -32.57 372.43 -10.92 -43.49 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -6.01 Total: 15.10 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -5.04 Total: -5.34 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.52 Total: -55.92 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: 0.06 Total: -16.77 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.57 -10.92 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185258893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.628 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds