Wall clock time and date at job start Sat Apr 11 2020 06:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86801 * 120.00288 * 2 1 4 4 H 1.48500 * 109.47049 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46729 * 299.99820 * 3 2 1 6 6 H 1.48493 * 109.46932 * 59.99748 * 3 2 1 7 7 C 1.40169 * 119.99551 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99469 * 180.02562 * 7 2 1 9 9 C 1.41530 * 120.00073 * 359.97438 * 7 2 1 10 10 O 1.21812 * 120.00026 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99854 * 179.97438 * 9 7 2 12 12 C 1.38583 * 119.99876 * 179.97438 * 11 9 7 13 13 C 1.36675 * 126.31732 * 0.19174 * 12 11 9 14 14 C 1.39464 * 107.84016 * 180.25760 * 13 12 11 15 15 N 1.30996 * 108.53947 * 359.74156 * 14 13 12 16 16 N 1.36060 * 126.31597 * 179.97438 * 12 11 9 17 17 C 1.46502 * 126.11881 * 0.02562 * 16 12 11 18 18 H 1.09005 * 110.64229 * 358.01948 * 17 16 12 19 19 C 1.54594 * 110.72227 * 121.16627 * 17 16 12 20 20 C 1.53997 * 105.13868 * 140.49448 * 19 17 16 21 21 N 1.47904 * 107.05501 * 1.23144 * 20 19 17 22 22 C 1.46907 * 110.99339 * 214.15047 * 21 20 19 23 23 C 1.50702 * 109.46818 * 69.87861 * 22 21 20 24 24 C 1.38234 * 120.00257 * 89.99881 * 23 22 21 25 25 C 1.38238 * 119.99675 * 180.25732 * 24 23 22 26 26 C 1.38228 * 120.00114 * 359.50218 * 25 24 23 27 27 C 1.38234 * 120.00051 * 0.47390 * 26 25 24 28 28 C 1.38235 * 119.99522 * 269.96894 * 23 22 21 29 29 C 1.48528 * 105.81827 * 334.66533 * 21 20 19 30 30 H 0.97002 * 120.00065 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99492 * 0.02562 * 11 9 7 32 32 H 1.07999 * 126.08221 * 359.97438 * 13 12 11 33 33 H 1.08000 * 125.72900 * 179.73591 * 14 13 12 34 34 H 1.08999 * 110.31133 * 21.58588 * 19 17 16 35 35 H 1.08998 * 110.31495 * 259.41209 * 19 17 16 36 36 H 1.08999 * 109.91837 * 241.87297 * 20 19 17 37 37 H 1.09002 * 110.07694 * 120.67361 * 20 19 17 38 38 H 1.08993 * 109.47718 * 309.87307 * 22 21 20 39 39 H 1.08998 * 109.46552 * 189.87129 * 22 21 20 40 40 H 1.08002 * 119.99744 * 359.97115 * 24 23 22 41 41 H 1.08004 * 119.99577 * 179.72816 * 25 24 23 42 42 H 1.07999 * 119.99927 * 180.26554 * 26 25 24 43 43 H 1.08001 * 120.00294 * 179.78842 * 27 26 25 44 44 H 1.07996 * 120.00471 * 0.02562 * 28 23 22 45 45 H 1.08999 * 110.66377 * 157.64689 * 29 21 20 46 46 H 1.09004 * 110.66881 * 280.77179 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7002 1.3463 0.0006 5 1 1.8815 2.3963 -1.2126 6 1 1.8815 2.3964 1.2124 7 6 2.0069 -1.2140 0.0005 8 1 3.0869 -1.2139 0.0010 9 6 1.2992 -2.4396 0.0016 10 8 0.0810 -2.4395 0.0016 11 7 1.9730 -3.6068 0.0016 12 6 1.2800 -4.8070 0.0032 13 6 -0.0784 -4.9573 0.0012 14 6 -0.3571 -6.3238 0.0099 15 7 0.7766 -6.9801 0.0113 16 7 1.8265 -6.0530 0.0030 17 6 3.2571 -6.3685 0.0014 18 1 3.8519 -5.4558 -0.0348 19 6 3.6315 -7.2168 1.2384 20 6 4.6465 -8.2538 0.7228 21 7 4.8525 -7.9808 -0.7162 22 6 5.0824 -9.2262 -1.4606 23 6 3.8051 -10.0244 -1.5108 24 6 2.9144 -9.8386 -2.5514 25 6 1.7403 -10.5670 -2.5946 26 6 1.4618 -11.4885 -1.6026 27 6 2.3527 -11.6747 -0.5623 28 6 3.5246 -10.9429 -0.5165 29 6 3.6151 -7.3034 -1.1810 30 1 -0.4850 0.8401 0.0004 31 1 2.9430 -3.6068 0.0013 32 1 -0.8066 -4.1597 -0.0015 33 1 -1.3422 -6.7665 0.0148 34 1 2.7483 -7.7171 1.6356 35 1 4.0878 -6.5890 2.0037 36 1 4.2498 -9.2601 0.8568 37 1 5.5902 -8.1524 1.2588 38 1 5.8563 -9.8099 -0.9622 39 1 5.4029 -8.9892 -2.4750 40 1 3.1337 -9.1210 -3.3282 41 1 1.0423 -10.4186 -3.4053 42 1 0.5465 -12.0606 -1.6387 43 1 2.1335 -12.3923 0.2146 44 1 4.2205 -11.0881 0.2965 45 1 3.8095 -6.7246 -2.0839 46 1 2.8201 -8.0293 -1.3519 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185258893.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:05 Heat of formation + Delta-G solvation = 68.444483 kcal Electronic energy + Delta-G solvation = -29477.886604 eV Core-core repulsion = 25561.660897 eV Total energy + Delta-G solvation = -3916.225707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.23907 -41.01452 -39.55121 -38.92828 -35.52293 -34.97019 -34.43485 -32.43762 -31.90357 -30.56445 -30.26486 -29.14802 -28.25767 -26.45990 -23.85361 -23.46700 -23.27574 -22.61667 -21.50339 -21.27845 -20.61008 -19.45233 -18.47812 -17.78089 -17.52390 -16.95183 -16.61424 -16.18530 -16.07115 -15.93246 -15.88445 -15.34408 -15.17224 -14.72541 -14.61710 -14.56531 -14.36939 -14.15988 -13.98627 -13.75158 -13.25651 -13.21652 -12.88873 -12.81187 -12.75680 -12.72080 -12.51334 -12.43130 -12.12581 -12.03972 -11.97812 -11.76036 -11.57665 -11.38174 -10.95844 -9.85965 -9.80992 -9.72833 -9.68193 -9.48752 -8.75269 -8.41882 -7.05816 0.40056 0.48280 0.98825 1.33993 1.41515 1.43728 1.60419 2.03441 2.21048 2.45131 2.72404 2.83463 3.10574 3.39007 3.51132 3.62603 3.75986 3.84309 3.91978 4.00737 4.10843 4.17104 4.25784 4.32309 4.37120 4.46887 4.59505 4.62515 4.70242 4.78238 4.81934 4.89030 4.92027 4.95659 5.05810 5.10607 5.12905 5.18989 5.37656 5.44747 5.52981 5.56329 5.61667 5.77057 5.80058 5.90832 6.00134 6.06352 6.10094 6.40905 6.70770 6.85433 7.32238 8.32126 8.51972 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019003 B = 0.002744 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.116501 B =10200.140237 C =10954.400452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.033 3.967 3 Si 1.003 2.997 4 H -0.244 1.244 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.094 0.906 9 C 0.533 3.467 10 O -0.595 6.595 11 N -0.663 5.663 12 C 0.329 3.671 13 C -0.336 4.336 14 C 0.061 3.939 15 N -0.314 5.314 16 N -0.386 5.386 17 C 0.151 3.849 18 H 0.109 0.891 19 C -0.132 4.132 20 C 0.036 3.964 21 N -0.500 5.500 22 C 0.084 3.916 23 C -0.128 4.128 24 C -0.118 4.118 25 C -0.132 4.132 26 C -0.126 4.126 27 C -0.128 4.128 28 C -0.117 4.117 29 C 0.025 3.975 30 H 0.281 0.719 31 H 0.404 0.596 32 H 0.136 0.864 33 H 0.205 0.795 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.080 0.920 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.698 -19.610 -1.335 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.186 4.186 3 Si 0.822 3.178 4 H -0.167 1.167 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.591 4.591 8 H 0.112 0.888 9 C 0.343 3.657 10 O -0.480 6.480 11 N -0.311 5.311 12 C 0.106 3.894 13 C -0.369 4.369 14 C -0.125 4.125 15 N -0.136 5.136 16 N -0.176 5.176 17 C 0.049 3.951 18 H 0.127 0.873 19 C -0.171 4.171 20 C -0.092 4.092 21 N -0.222 5.222 22 C -0.043 4.043 23 C -0.129 4.129 24 C -0.137 4.137 25 C -0.150 4.150 26 C -0.144 4.144 27 C -0.146 4.146 28 C -0.135 4.135 29 C -0.103 4.103 30 H 0.091 0.909 31 H 0.239 0.761 32 H 0.154 0.846 33 H 0.221 0.779 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.136 0.864 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.156 0.844 44 H 0.154 0.846 45 H 0.098 0.902 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.874 -20.267 -1.414 23.532 hybrid contribution -0.994 1.177 0.003 1.541 sum 10.880 -19.090 -1.412 22.018 Atomic orbital electron populations 1.70146 1.09692 1.29706 1.32868 1.27023 0.95520 1.05089 0.90958 0.84880 0.79440 0.74805 0.78688 1.16698 1.19209 1.19205 1.20466 0.95644 0.89869 1.53162 0.88750 1.17385 0.87433 0.82722 0.78197 1.90578 1.15250 1.85962 1.56239 1.43325 1.09730 1.02351 1.75683 1.18627 0.91872 0.81175 0.97684 1.21590 0.93882 0.97620 1.23759 1.23943 0.98265 0.91847 0.98419 1.77184 0.93812 1.13764 1.28850 1.48795 1.06130 1.00920 1.61784 1.22220 0.75097 1.00100 0.97716 0.87321 1.22704 0.99701 0.97885 0.96762 1.23007 0.99383 0.98000 0.88809 1.65203 1.32616 1.21044 1.03333 1.21470 0.93697 0.88412 1.00741 1.20637 0.98640 0.98059 0.95607 1.21191 0.94854 0.99210 0.98439 1.21356 0.97284 0.96655 0.99683 1.21408 0.99980 0.98392 0.94593 1.21429 0.94432 1.00038 0.98681 1.21292 0.97971 0.95917 0.98325 1.23613 0.93111 0.97024 0.96585 0.90853 0.76087 0.84616 0.77882 0.91730 0.89411 0.91900 0.87812 0.87705 0.89029 0.86378 0.85543 0.84761 0.84405 0.84566 0.90203 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.06 11.72 21.86 0.26 -45.81 16 2 C 0.03 1.73 5.50 85.34 0.47 2.20 16 3 Si 1.00 38.15 29.56 68.60 2.03 40.18 16 4 H -0.24 -8.52 7.11 99.48 0.71 -7.81 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 6 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 7 C -0.56 -29.71 9.30 23.55 0.22 -29.49 16 8 H 0.09 4.43 7.85 -2.91 -0.02 4.40 16 9 C 0.53 30.06 7.52 85.05 0.64 30.70 16 10 O -0.60 -38.37 11.98 -4.71 -0.06 -38.42 16 11 N -0.66 -30.61 5.37 -316.34 -1.70 -32.31 16 12 C 0.33 14.83 7.68 131.50 1.01 15.84 16 13 C -0.34 -16.02 9.65 22.20 0.21 -15.80 16 14 C 0.06 2.35 11.99 85.11 1.02 3.37 16 15 N -0.31 -11.84 11.96 -57.21 -0.68 -12.53 16 16 N -0.39 -14.34 3.43 -318.44 -1.09 -15.43 16 17 C 0.15 4.36 3.91 46.19 0.18 4.54 16 18 H 0.11 2.98 6.93 -2.38 -0.02 2.97 16 19 C -0.13 -3.19 6.65 31.47 0.21 -2.98 16 20 C 0.04 0.67 6.46 86.45 0.56 1.22 16 21 N -0.50 -10.02 5.54 -887.58 -4.91 -14.93 16 22 C 0.08 1.40 5.69 85.56 0.49 1.88 16 23 C -0.13 -2.47 3.96 -19.87 -0.08 -2.55 16 24 C -0.12 -2.53 7.49 22.27 0.17 -2.37 16 25 C -0.13 -2.79 10.05 22.27 0.22 -2.56 16 26 C -0.13 -2.43 10.05 22.27 0.22 -2.21 16 27 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 28 C -0.12 -2.09 8.19 22.27 0.18 -1.91 16 29 C 0.03 0.65 5.71 86.65 0.50 1.14 16 30 H 0.28 14.58 8.29 -92.71 -0.77 13.82 16 31 H 0.40 15.56 7.56 -92.71 -0.70 14.86 16 32 H 0.14 7.56 5.82 -2.91 -0.02 7.54 16 33 H 0.20 6.21 8.06 -2.91 -0.02 6.19 16 34 H 0.06 1.83 7.79 -2.39 -0.02 1.82 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 1.12 4.86 -2.39 -0.01 1.11 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.10 1.33 8.03 -2.39 -0.02 1.31 16 39 H 0.09 1.43 8.09 -2.39 -0.02 1.41 16 40 H 0.12 2.43 8.05 -2.91 -0.02 2.41 16 41 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 44 H 0.14 1.88 7.17 -2.91 -0.02 1.86 16 45 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.07 2.08 4.60 -2.39 -0.01 2.07 16 Total: -1.00 -73.49 372.43 0.60 -72.88 By element: Atomic # 1 Polarization: 47.12 SS G_CDS: 0.32 Total: 47.44 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 6.45 Total: -1.07 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -8.13 Total: -121.00 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.06 Total: -38.42 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Total: -73.49 0.60 -72.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185258893.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.329 kcal (2) G-P(sol) polarization free energy of solvation -73.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds