Wall clock time and date at job start Sat Apr 11 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30613 * 1 3 3 Si 1.86795 * 120.00410 * 2 1 4 4 H 1.48489 * 109.47577 * 270.00249 * 3 2 1 5 5 H 1.48503 * 109.46857 * 30.00498 * 3 2 1 6 6 H 1.48504 * 109.47239 * 149.99812 * 3 2 1 7 7 C 1.40167 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.41531 * 120.00057 * 359.97438 * 7 2 1 10 10 O 1.21819 * 119.99873 * 0.02562 * 9 7 2 11 11 N 1.34770 * 119.99846 * 180.02562 * 9 7 2 12 12 C 1.38592 * 119.99753 * 180.02562 * 11 9 7 13 13 C 1.36670 * 126.31716 * 359.97387 * 12 11 9 14 14 C 1.39468 * 107.84422 * 180.02562 * 13 12 11 15 15 N 1.30999 * 108.53693 * 359.75161 * 14 13 12 16 16 N 1.36062 * 126.31412 * 179.97438 * 12 11 9 17 17 C 1.46502 * 126.12280 * 359.94582 * 16 12 11 18 18 H 1.09003 * 110.77967 * 1.78968 * 17 16 12 19 19 C 1.54598 * 110.72196 * 238.54690 * 17 16 12 20 20 C 1.54000 * 105.22213 * 219.72986 * 19 17 16 21 21 N 1.47897 * 107.05672 * 358.72428 * 20 19 17 22 22 C 1.46906 * 110.99555 * 145.84575 * 21 20 19 23 23 C 1.50699 * 109.47317 * 69.87469 * 22 21 20 24 24 C 1.38241 * 119.99749 * 269.72850 * 23 22 21 25 25 C 1.38236 * 119.99907 * 179.81008 * 24 23 22 26 26 C 1.38237 * 119.99637 * 0.41539 * 25 24 23 27 27 C 1.38227 * 120.00256 * 359.81389 * 26 25 24 28 28 C 1.38229 * 120.00063 * 89.99464 * 23 22 21 29 29 C 1.48533 * 105.82381 * 25.32929 * 21 20 19 30 30 H 0.97009 * 119.99577 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00357 * 0.02562 * 11 9 7 32 32 H 1.08002 * 126.07940 * 0.04570 * 13 12 11 33 33 H 1.07999 * 125.73312 * 179.97438 * 14 13 12 34 34 H 1.09002 * 110.31193 * 100.76344 * 19 17 16 35 35 H 1.09000 * 110.30788 * 338.69288 * 19 17 16 36 36 H 1.09000 * 109.91521 * 118.07714 * 20 19 17 37 37 H 1.08997 * 109.91264 * 239.37252 * 20 19 17 38 38 H 1.09004 * 109.46885 * 189.86932 * 22 21 20 39 39 H 1.08991 * 109.47070 * 309.87158 * 22 21 20 40 40 H 1.08000 * 120.00008 * 359.97438 * 24 23 22 41 41 H 1.07998 * 119.99703 * 180.20279 * 25 24 23 42 42 H 1.07998 * 119.99606 * 179.79107 * 26 25 24 43 43 H 1.08007 * 119.99957 * 179.97438 * 27 26 25 44 44 H 1.08002 * 120.00445 * 359.97438 * 28 23 22 45 45 H 1.09003 * 110.66452 * 79.22844 * 29 21 20 46 46 H 1.08995 * 110.66642 * 202.18742 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6176 0.0000 4 1 2.4877 2.0464 -1.3999 5 1 1.4377 2.6526 0.7002 6 1 3.5378 1.4400 0.7001 7 6 2.0069 -1.2139 -0.0005 8 1 3.0869 -1.2140 -0.0001 9 6 1.2992 -2.4396 -0.0005 10 8 0.0810 -2.4395 -0.0005 11 7 1.9730 -3.6067 -0.0005 12 6 1.2800 -4.8069 -0.0011 13 6 -0.0784 -4.9572 -0.0011 14 6 -0.3572 -6.3238 -0.0012 15 7 0.7765 -6.9801 -0.0065 16 7 1.8265 -6.0530 -0.0016 17 6 3.2571 -6.3686 -0.0029 18 1 3.8542 -5.4572 0.0285 19 6 3.6277 -7.2231 -1.2368 20 6 4.6401 -8.2621 -0.7198 21 7 4.8506 -7.9848 0.7176 22 6 5.0775 -9.2284 1.4659 23 6 6.4217 -9.7998 1.0949 24 6 6.5275 -10.6914 0.0438 25 6 7.7611 -11.2125 -0.2991 26 6 8.8876 -10.8486 0.4146 27 6 8.7811 -9.9607 1.4687 28 6 7.5481 -9.4366 1.8091 29 6 3.6169 -7.3010 1.1831 30 1 -0.4850 0.8402 0.0004 31 1 2.9430 -3.6068 -0.0002 32 1 -0.8066 -4.1596 -0.0015 33 1 -1.3422 -6.7665 -0.0008 34 1 4.0845 -6.5997 -2.0054 35 1 2.7423 -7.7215 -1.6315 36 1 4.2392 -9.2674 -0.8492 37 1 5.5821 -8.1628 -1.2590 38 1 5.0547 -9.0183 2.5352 39 1 4.2966 -9.9479 1.2202 40 1 5.6467 -10.9788 -0.5113 41 1 7.8442 -11.9066 -1.1224 42 1 9.8509 -11.2583 0.1489 43 1 9.6613 -9.6767 2.0266 44 1 7.4649 -8.7430 2.6328 45 1 2.8196 -8.0233 1.3584 46 1 3.8149 -6.7221 2.0851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185258915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:10 Heat of formation + Delta-G solvation = 83.654995 kcal Electronic energy + Delta-G solvation = -28460.021420 eV Core-core repulsion = 24544.455291 eV Total energy + Delta-G solvation = -3915.566130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.68448 -39.77763 -38.42590 -37.51496 -34.02646 -33.52597 -32.50581 -31.36868 -31.13027 -29.88169 -28.56439 -27.78194 -26.34902 -25.56143 -22.86393 -22.18736 -21.83516 -21.60446 -20.78930 -19.74203 -18.98544 -17.77552 -16.97309 -16.70147 -16.22978 -15.63315 -15.56337 -15.43463 -14.94893 -14.51592 -14.26237 -14.06749 -13.80790 -13.69769 -13.58069 -13.16825 -13.07429 -12.77047 -12.73298 -12.53955 -12.41836 -12.07066 -11.79150 -11.45672 -11.43802 -11.42804 -11.21439 -11.17911 -11.13138 -10.85020 -10.72433 -10.42927 -9.83668 -9.77365 -9.15335 -9.06917 -9.00084 -8.62724 -8.21837 -7.76655 -6.98042 -6.45524 -4.99408 1.08348 1.17300 2.59680 2.79150 3.02130 3.09431 3.12703 3.47325 3.72268 3.90817 4.01262 4.35180 4.36461 4.44334 4.52081 4.59575 4.71264 4.77254 4.82633 4.89114 5.02741 5.08269 5.16428 5.25689 5.35255 5.40599 5.54636 5.57874 5.64981 5.73457 5.75749 5.77660 5.80123 5.92460 5.94986 6.19882 6.26790 6.28679 6.37114 6.50559 6.62128 6.72266 6.78327 7.04328 7.10689 7.19428 7.62977 7.72294 7.95960 8.13684 8.47071 8.72026 9.17538 10.29431 10.48573 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.002323 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.176478 B =12051.801555 C =13404.222381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.088 3.912 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.548 3.452 10 O -0.551 6.551 11 N -0.672 5.672 12 C 0.348 3.652 13 C -0.306 4.306 14 C 0.058 3.942 15 N -0.331 5.331 16 N -0.402 5.402 17 C 0.168 3.832 18 H 0.106 0.894 19 C -0.139 4.139 20 C 0.043 3.957 21 N -0.508 5.508 22 C 0.085 3.915 23 C -0.074 4.074 24 C -0.113 4.113 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.098 4.098 29 C 0.032 3.968 30 H 0.275 0.725 31 H 0.389 0.611 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.065 0.935 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.390 -17.995 1.019 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.570 4.570 8 H 0.090 0.910 9 C 0.357 3.643 10 O -0.432 6.432 11 N -0.318 5.318 12 C 0.126 3.874 13 C -0.339 4.339 14 C -0.127 4.127 15 N -0.153 5.153 16 N -0.193 5.193 17 C 0.064 3.936 18 H 0.124 0.876 19 C -0.178 4.178 20 C -0.085 4.085 21 N -0.233 5.233 22 C -0.043 4.043 23 C -0.074 4.074 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.141 4.141 27 C -0.140 4.140 28 C -0.117 4.117 29 C -0.097 4.097 30 H 0.086 0.914 31 H 0.221 0.779 32 H 0.190 0.810 33 H 0.190 0.810 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.083 0.917 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.447 -18.603 1.109 23.580 hybrid contribution 0.029 1.025 -0.172 1.040 sum 14.477 -17.578 0.937 22.791 Atomic orbital electron populations 1.69990 1.07287 1.28132 1.31668 1.25752 0.94703 1.00709 0.92406 0.86234 0.80165 0.80558 0.79126 1.19437 1.20142 1.18643 1.19901 0.94363 0.89552 1.53158 0.91050 1.16990 0.87672 0.81204 0.78434 1.90595 1.13402 1.84844 1.54357 1.43860 1.09157 1.02917 1.75907 1.18667 0.91736 0.80266 0.96686 1.21780 0.93661 0.96747 1.21662 1.23588 0.96714 0.93529 0.98894 1.77166 0.93880 1.13901 1.30379 1.48608 1.04783 1.02490 1.63378 1.21795 0.77324 0.99070 0.95435 0.87649 1.22784 0.99773 0.97673 0.97550 1.22853 0.98933 0.97607 0.89125 1.64792 1.34527 1.21096 1.02839 1.21207 0.93415 0.90546 0.99114 1.19717 0.95029 0.96657 0.96039 1.21080 0.97717 0.97419 0.96927 1.21111 0.92719 1.00263 0.99894 1.21146 0.98475 0.98323 0.96168 1.21161 0.97560 0.97609 0.97666 1.21047 0.92003 0.98908 0.99746 1.23517 0.91242 0.97176 0.97734 0.91435 0.77857 0.80968 0.81037 0.90401 0.89694 0.93382 0.90091 0.89704 0.93395 0.86406 0.86223 0.86301 0.86129 0.85927 0.91667 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.80 11.72 55.56 0.65 -20.15 16 2 C 0.09 2.29 5.50 -17.35 -0.10 2.19 16 3 Si 0.92 18.77 29.56 -169.99 -5.02 13.74 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.53 -14.06 9.30 -37.60 -0.35 -14.41 16 8 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 9 C 0.55 14.83 7.52 -15.01 -0.11 14.72 16 10 O -0.55 -16.73 11.98 5.08 0.06 -16.67 16 11 N -0.67 -14.98 5.37 -13.99 -0.08 -15.05 16 12 C 0.35 7.55 7.68 -153.09 -1.18 6.38 16 13 C -0.31 -6.90 9.65 -39.69 -0.38 -7.28 16 14 C 0.06 1.09 11.99 -17.45 -0.21 0.88 16 15 N -0.33 -6.18 11.94 30.57 0.37 -5.81 16 16 N -0.40 -7.34 3.43 -51.91 -0.18 -7.52 16 17 C 0.17 2.43 3.92 -65.98 -0.26 2.17 16 18 H 0.11 1.46 6.94 -51.93 -0.36 1.10 16 19 C -0.14 -1.76 6.65 -25.37 -0.17 -1.92 16 20 C 0.04 0.47 5.63 -2.75 -0.02 0.45 16 21 N -0.51 -5.70 5.26 -231.79 -1.22 -6.92 16 22 C 0.08 0.83 4.92 -4.97 -0.02 0.81 16 23 C -0.07 -0.71 5.10 -104.62 -0.53 -1.24 16 24 C -0.11 -1.01 8.95 -39.58 -0.35 -1.36 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 27 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 28 C -0.10 -0.90 9.70 -39.58 -0.38 -1.29 16 29 C 0.03 0.41 6.20 -1.81 -0.01 0.40 16 30 H 0.27 6.92 8.29 -40.82 -0.34 6.58 16 31 H 0.39 7.36 7.57 -40.82 -0.31 7.05 16 32 H 0.17 4.41 5.82 -52.49 -0.31 4.10 16 33 H 0.17 2.60 8.06 -52.49 -0.42 2.17 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.21 7.78 -51.93 -0.40 0.80 16 36 H 0.05 0.50 6.94 -51.93 -0.36 0.14 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.78 8.06 -51.93 -0.42 0.36 16 39 H 0.05 0.47 7.76 -51.93 -0.40 0.06 16 40 H 0.12 0.94 7.50 -52.49 -0.39 0.55 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.07 0.92 7.76 -51.93 -0.40 0.51 16 46 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -32.20 380.42 -11.24 -43.45 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.29 Total: 12.88 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -5.27 Total: -3.68 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.46 Total: -55.45 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.06 Total: -16.67 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.20 -11.24 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185258915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.101 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds