Wall clock time and date at job start Sat Apr 11 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30613 * 1 3 3 Si 1.86795 * 120.00410 * 2 1 4 4 H 1.48489 * 109.47577 * 270.00249 * 3 2 1 5 5 H 1.48503 * 109.46857 * 30.00498 * 3 2 1 6 6 H 1.48504 * 109.47239 * 149.99812 * 3 2 1 7 7 C 1.40167 * 119.99708 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.41531 * 120.00057 * 359.97438 * 7 2 1 10 10 O 1.21819 * 119.99873 * 0.02562 * 9 7 2 11 11 N 1.34770 * 119.99846 * 180.02562 * 9 7 2 12 12 C 1.38592 * 119.99753 * 180.02562 * 11 9 7 13 13 C 1.36670 * 126.31716 * 359.97387 * 12 11 9 14 14 C 1.39468 * 107.84422 * 180.02562 * 13 12 11 15 15 N 1.30999 * 108.53693 * 359.75161 * 14 13 12 16 16 N 1.36062 * 126.31412 * 179.97438 * 12 11 9 17 17 C 1.46502 * 126.12280 * 359.94582 * 16 12 11 18 18 H 1.09003 * 110.77967 * 1.78968 * 17 16 12 19 19 C 1.54598 * 110.72196 * 238.54690 * 17 16 12 20 20 C 1.54000 * 105.22213 * 219.72986 * 19 17 16 21 21 N 1.47897 * 107.05672 * 358.72428 * 20 19 17 22 22 C 1.46906 * 110.99555 * 145.84575 * 21 20 19 23 23 C 1.50699 * 109.47317 * 69.87469 * 22 21 20 24 24 C 1.38241 * 119.99749 * 269.72850 * 23 22 21 25 25 C 1.38236 * 119.99907 * 179.81008 * 24 23 22 26 26 C 1.38237 * 119.99637 * 0.41539 * 25 24 23 27 27 C 1.38227 * 120.00256 * 359.81389 * 26 25 24 28 28 C 1.38229 * 120.00063 * 89.99464 * 23 22 21 29 29 C 1.48533 * 105.82381 * 25.32929 * 21 20 19 30 30 H 0.97009 * 119.99577 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00357 * 0.02562 * 11 9 7 32 32 H 1.08002 * 126.07940 * 0.04570 * 13 12 11 33 33 H 1.07999 * 125.73312 * 179.97438 * 14 13 12 34 34 H 1.09002 * 110.31193 * 100.76344 * 19 17 16 35 35 H 1.09000 * 110.30788 * 338.69288 * 19 17 16 36 36 H 1.09000 * 109.91521 * 118.07714 * 20 19 17 37 37 H 1.08997 * 109.91264 * 239.37252 * 20 19 17 38 38 H 1.09004 * 109.46885 * 189.86932 * 22 21 20 39 39 H 1.08991 * 109.47070 * 309.87158 * 22 21 20 40 40 H 1.08000 * 120.00008 * 359.97438 * 24 23 22 41 41 H 1.07998 * 119.99703 * 180.20279 * 25 24 23 42 42 H 1.07998 * 119.99606 * 179.79107 * 26 25 24 43 43 H 1.08007 * 119.99957 * 179.97438 * 27 26 25 44 44 H 1.08002 * 120.00445 * 359.97438 * 28 23 22 45 45 H 1.09003 * 110.66452 * 79.22844 * 29 21 20 46 46 H 1.08995 * 110.66642 * 202.18742 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6176 0.0000 4 1 2.4877 2.0464 -1.3999 5 1 1.4377 2.6526 0.7002 6 1 3.5378 1.4400 0.7001 7 6 2.0069 -1.2139 -0.0005 8 1 3.0869 -1.2140 -0.0001 9 6 1.2992 -2.4396 -0.0005 10 8 0.0810 -2.4395 -0.0005 11 7 1.9730 -3.6067 -0.0005 12 6 1.2800 -4.8069 -0.0011 13 6 -0.0784 -4.9572 -0.0011 14 6 -0.3572 -6.3238 -0.0012 15 7 0.7765 -6.9801 -0.0065 16 7 1.8265 -6.0530 -0.0016 17 6 3.2571 -6.3686 -0.0029 18 1 3.8542 -5.4572 0.0285 19 6 3.6277 -7.2231 -1.2368 20 6 4.6401 -8.2621 -0.7198 21 7 4.8506 -7.9848 0.7176 22 6 5.0775 -9.2284 1.4659 23 6 6.4217 -9.7998 1.0949 24 6 6.5275 -10.6914 0.0438 25 6 7.7611 -11.2125 -0.2991 26 6 8.8876 -10.8486 0.4146 27 6 8.7811 -9.9607 1.4687 28 6 7.5481 -9.4366 1.8091 29 6 3.6169 -7.3010 1.1831 30 1 -0.4850 0.8402 0.0004 31 1 2.9430 -3.6068 -0.0002 32 1 -0.8066 -4.1596 -0.0015 33 1 -1.3422 -6.7665 -0.0008 34 1 4.0845 -6.5997 -2.0054 35 1 2.7423 -7.7215 -1.6315 36 1 4.2392 -9.2674 -0.8492 37 1 5.5821 -8.1628 -1.2590 38 1 5.0547 -9.0183 2.5352 39 1 4.2966 -9.9479 1.2202 40 1 5.6467 -10.9788 -0.5113 41 1 7.8442 -11.9066 -1.1224 42 1 9.8509 -11.2583 0.1489 43 1 9.6613 -9.6767 2.0266 44 1 7.4649 -8.7430 2.6328 45 1 2.8196 -8.0233 1.3584 46 1 3.8149 -6.7221 2.0851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185258915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:08 Heat of formation + Delta-G solvation = 63.882706 kcal Electronic energy + Delta-G solvation = -28460.878811 eV Core-core repulsion = 24544.455291 eV Total energy + Delta-G solvation = -3916.423520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.21917 -40.59834 -39.60399 -39.17040 -35.52488 -34.97455 -34.44236 -32.45618 -31.75366 -30.85413 -30.31155 -28.96877 -28.26164 -26.41834 -23.59788 -23.46758 -23.37713 -22.61108 -21.65071 -21.32201 -20.57681 -19.43043 -18.46253 -17.55153 -17.53129 -17.17590 -16.57944 -16.19727 -16.04387 -15.96176 -15.85470 -15.41442 -14.95934 -14.67756 -14.61749 -14.51693 -14.32420 -14.23035 -13.98027 -13.71473 -13.34272 -13.26532 -13.23450 -12.86470 -12.76843 -12.72754 -12.53923 -12.49384 -12.06066 -12.00153 -11.81441 -11.73834 -11.57824 -11.41360 -10.94360 -9.86537 -9.81095 -9.77590 -9.70963 -9.47278 -8.76290 -8.41646 -7.05693 0.43915 0.54900 0.97135 1.32291 1.42927 1.43543 1.59154 2.02989 2.21065 2.45147 2.67838 2.83054 3.16748 3.35416 3.46815 3.62019 3.72385 3.84627 3.95709 4.00172 4.09996 4.20220 4.29625 4.32794 4.35001 4.43821 4.56624 4.60109 4.67021 4.71915 4.78921 4.82330 4.91318 4.92198 5.01681 5.13837 5.18953 5.20234 5.37962 5.45058 5.57507 5.65780 5.67668 5.74576 5.79914 5.88382 5.99406 6.06143 6.15757 6.39667 6.70813 6.83781 7.31890 8.32006 8.51891 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.002323 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.176478 B =12051.801555 C =13404.222381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.033 3.967 3 Si 1.003 2.997 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.247 1.247 7 C -0.556 4.556 8 H 0.095 0.905 9 C 0.533 3.467 10 O -0.595 6.595 11 N -0.663 5.663 12 C 0.331 3.669 13 C -0.336 4.336 14 C 0.065 3.935 15 N -0.321 5.321 16 N -0.389 5.389 17 C 0.154 3.846 18 H 0.112 0.888 19 C -0.132 4.132 20 C 0.051 3.949 21 N -0.507 5.507 22 C 0.087 3.913 23 C -0.087 4.087 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.129 4.129 28 C -0.112 4.112 29 C 0.042 3.958 30 H 0.281 0.719 31 H 0.404 0.596 32 H 0.137 0.863 33 H 0.208 0.792 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.124 0.876 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.126 0.874 45 H 0.053 0.947 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.243 -18.730 0.840 25.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.186 4.186 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.591 4.591 8 H 0.113 0.887 9 C 0.342 3.658 10 O -0.480 6.480 11 N -0.311 5.311 12 C 0.108 3.892 13 C -0.369 4.369 14 C -0.120 4.120 15 N -0.143 5.143 16 N -0.179 5.179 17 C 0.051 3.949 18 H 0.130 0.870 19 C -0.171 4.171 20 C -0.077 4.077 21 N -0.232 5.232 22 C -0.040 4.040 23 C -0.087 4.087 24 C -0.141 4.141 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.147 4.147 28 C -0.130 4.130 29 C -0.087 4.087 30 H 0.092 0.908 31 H 0.240 0.760 32 H 0.154 0.846 33 H 0.225 0.775 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.142 0.858 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.144 0.856 45 H 0.072 0.928 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.363 -19.407 0.930 26.057 hybrid contribution -0.826 1.111 -0.119 1.390 sum 16.536 -18.296 0.811 24.675 Atomic orbital electron populations 1.70140 1.09668 1.29765 1.32775 1.27017 0.95529 1.05081 0.90985 0.84931 0.78830 0.74510 0.79592 1.18481 1.19644 1.16979 1.20437 0.95652 0.89869 1.53181 0.88732 1.17377 0.87431 0.82727 0.78217 1.90581 1.15243 1.85959 1.56265 1.43327 1.09770 1.02337 1.75626 1.18628 0.91889 0.81139 0.97521 1.21615 0.93881 0.97703 1.23707 1.23988 0.98293 0.91797 0.97949 1.77136 0.93921 1.13918 1.29370 1.48788 1.06094 1.00983 1.61997 1.22215 0.75098 1.00183 0.97390 0.86980 1.22734 0.99704 0.97783 0.96875 1.22812 0.98745 0.97265 0.88858 1.64829 1.33153 1.22059 1.03119 1.21212 0.93849 0.89800 0.99161 1.19732 0.94822 0.97401 0.96769 1.21233 0.98431 0.97493 0.96934 1.21396 0.92498 1.00362 1.00375 1.21468 0.99412 0.97913 0.95761 1.21432 0.97854 0.97495 0.97942 1.21214 0.92409 0.99356 1.00071 1.23367 0.91642 0.96632 0.97048 0.90842 0.76029 0.84551 0.77538 0.89485 0.91155 0.92644 0.89175 0.89305 0.93331 0.85831 0.84450 0.84266 0.84471 0.85585 0.92838 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -45.84 11.72 21.86 0.26 -45.58 16 2 C 0.03 1.72 5.50 85.34 0.47 2.19 16 3 Si 1.00 38.00 29.56 68.60 2.03 40.03 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.73 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 7 C -0.56 -29.53 9.30 23.55 0.22 -29.31 16 8 H 0.09 4.40 7.85 -2.91 -0.02 4.37 16 9 C 0.53 29.82 7.52 85.05 0.64 30.46 16 10 O -0.60 -38.13 11.98 -4.73 -0.06 -38.19 16 11 N -0.66 -30.20 5.37 -316.34 -1.70 -31.90 16 12 C 0.33 14.66 7.68 131.49 1.01 15.67 16 13 C -0.34 -15.77 9.65 22.20 0.21 -15.56 16 14 C 0.06 2.45 11.99 85.11 1.02 3.47 16 15 N -0.32 -11.79 11.94 -57.20 -0.68 -12.47 16 16 N -0.39 -14.08 3.43 -318.16 -1.09 -15.17 16 17 C 0.15 4.29 3.92 46.25 0.18 4.47 16 18 H 0.11 2.98 6.94 -2.39 -0.02 2.96 16 19 C -0.13 -3.15 6.65 31.48 0.21 -2.94 16 20 C 0.05 1.01 5.63 86.45 0.49 1.50 16 21 N -0.51 -10.56 5.26 -887.25 -4.66 -15.23 16 22 C 0.09 1.58 4.92 85.56 0.42 2.00 16 23 C -0.09 -1.52 5.10 -19.87 -0.10 -1.63 16 24 C -0.12 -1.96 8.95 22.27 0.20 -1.76 16 25 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 26 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 27 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 28 C -0.11 -1.88 9.70 22.27 0.22 -1.66 16 29 C 0.04 1.03 6.20 86.70 0.54 1.56 16 30 H 0.28 14.57 8.29 -92.70 -0.77 13.80 16 31 H 0.40 15.32 7.57 -92.71 -0.70 14.62 16 32 H 0.14 7.49 5.82 -2.91 -0.02 7.47 16 33 H 0.21 6.02 8.06 -2.91 -0.02 6.00 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.07 1.91 7.78 -2.39 -0.02 1.89 16 36 H 0.06 1.03 6.94 -2.39 -0.02 1.02 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.09 1.52 8.06 -2.39 -0.02 1.50 16 39 H 0.05 0.88 7.76 -2.39 -0.02 0.86 16 40 H 0.12 1.75 7.50 -2.91 -0.02 1.73 16 41 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 43 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 44 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 45 H 0.05 1.45 7.76 -2.39 -0.02 1.43 16 46 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -72.30 380.42 0.79 -71.51 By element: Atomic # 1 Polarization: 42.97 SS G_CDS: 0.31 Total: 43.27 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 6.39 Total: 3.73 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -7.88 Total: -120.36 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.06 Total: -38.19 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -72.30 0.79 -71.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185258915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.396 kcal (2) G-P(sol) polarization free energy of solvation -72.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds