Wall clock time and date at job start Sat Apr 11 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86796 * 120.00135 * 2 1 4 4 H 1.48506 * 109.46949 * 239.99931 * 3 2 1 5 5 H 1.48500 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47472 * 119.99488 * 3 2 1 7 7 C 1.39941 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99759 * 196.86118 * 7 2 1 9 9 C 1.41437 * 120.00012 * 16.86555 * 7 2 1 10 10 C 1.40784 * 120.17841 * 205.32399 * 9 7 2 11 11 C 1.37709 * 120.04078 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41314 * 359.77994 * 11 10 9 13 13 C 1.39883 * 120.35602 * 0.48040 * 12 11 10 14 14 C 1.47890 * 120.02181 * 179.78247 * 13 12 11 15 15 O 1.21550 * 119.99513 * 144.44752 * 14 13 12 16 16 N 1.34765 * 120.00058 * 324.44189 * 14 13 12 17 17 C 1.46926 * 120.63357 * 354.26857 * 16 14 13 18 18 C 1.53198 * 108.77376 * 233.58158 * 17 16 14 19 19 C 1.53033 * 109.31666 * 305.36410 * 18 17 16 20 20 C 1.52999 * 109.46437 * 181.38404 * 19 18 17 21 21 N 1.46496 * 109.47160 * 175.00032 * 20 19 18 22 22 C 1.34427 * 126.82326 * 125.00237 * 21 20 19 23 23 N 1.30830 * 108.07945 * 179.97438 * 22 21 20 24 24 C 1.33241 * 109.82862 * 0.02562 * 23 22 21 25 25 N 1.30721 * 108.94544 * 0.25407 * 24 23 22 26 26 C 1.53049 * 109.53709 * 61.36109 * 19 18 17 27 27 C 1.46933 * 120.63212 * 174.23953 * 16 14 13 28 28 C 1.39028 * 119.94713 * 359.50002 * 13 12 11 29 29 H 0.97002 * 120.00000 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.97840 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.79263 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.82088 * 180.23153 * 12 11 10 33 33 H 1.09001 * 109.59028 * 113.79979 * 17 16 14 34 34 H 1.08997 * 109.70531 * 353.43491 * 17 16 14 35 35 H 1.09000 * 109.49595 * 185.40499 * 18 17 16 36 36 H 1.09001 * 109.49311 * 65.31596 * 18 17 16 37 37 H 1.09000 * 109.46022 * 301.36182 * 19 18 17 38 38 H 1.09000 * 109.47133 * 54.99425 * 20 19 18 39 39 H 1.08998 * 109.46904 * 294.99968 * 20 19 18 40 40 H 1.08001 * 125.96000 * 359.97351 * 22 21 20 41 41 H 1.08003 * 125.52771 * 180.02562 * 24 23 22 42 42 H 1.09003 * 109.49518 * 58.59046 * 26 19 18 43 43 H 1.08996 * 109.49522 * 178.68439 * 26 19 18 44 44 H 1.08997 * 109.58849 * 246.20989 * 27 16 14 45 45 H 1.09009 * 109.58232 * 6.48569 * 27 16 14 46 46 H 1.08007 * 120.19725 * 180.28064 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0531 -1.2319 0.2718 9 6 1.3463 -2.4106 -0.3543 10 6 1.8167 -3.6475 0.1262 11 6 1.1707 -4.8129 -0.2215 12 6 0.0552 -4.7782 -1.0394 13 6 -0.4235 -3.5592 -1.5308 14 6 -1.6136 -3.5311 -2.4083 15 8 -2.4037 -2.6106 -2.3315 16 7 -1.8220 -4.5261 -3.2931 17 6 -0.8156 -5.5788 -3.4866 18 6 -0.4756 -5.6679 -4.9777 19 6 -1.7630 -5.8743 -5.7790 20 6 -1.4239 -5.9982 -7.2657 21 7 -2.6398 -6.3143 -8.0193 22 6 -3.1394 -5.6335 -9.0652 23 7 -4.2334 -6.2351 -9.4561 24 6 -4.4638 -7.2985 -8.6871 25 7 -3.5182 -7.3856 -7.7888 26 6 -2.6952 -4.6792 -5.5665 27 6 -3.0603 -4.5790 -4.0822 28 6 0.2169 -2.3735 -1.1888 29 1 -0.4850 0.8401 -0.0004 30 1 2.6848 -3.6824 0.7679 31 1 1.5347 -5.7595 0.1497 32 1 -0.4463 -5.6977 -1.3030 33 1 -1.2153 -6.5338 -3.1454 34 1 0.0838 -5.3360 -2.9208 35 1 0.1975 -6.5082 -5.1479 36 1 0.0072 -4.7441 -5.2965 37 1 -2.2582 -6.7850 -5.4423 38 1 -0.6921 -6.7936 -7.4064 39 1 -1.0094 -5.0557 -7.6236 40 1 -2.7121 -4.7449 -9.5059 41 1 -5.2987 -7.9763 -8.7872 42 1 -2.1915 -3.7647 -5.8798 43 1 -3.6020 -4.8158 -6.1558 44 1 -3.6431 -5.4523 -3.7894 45 1 -3.6439 -3.6750 -3.9074 46 1 -0.1519 -1.4296 -1.5623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190725988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:12 Heat of formation + Delta-G solvation = 77.974267 kcal Electronic energy + Delta-G solvation = -28957.596333 eV Core-core repulsion = 25041.783868 eV Total energy + Delta-G solvation = -3915.812464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.30696 -40.01255 -37.89835 -36.92076 -34.90354 -33.80263 -32.26540 -31.45329 -31.41910 -29.85197 -29.50961 -27.71578 -25.47438 -24.37761 -23.45641 -22.36343 -22.20008 -21.48585 -20.96460 -20.24392 -18.81066 -17.64287 -17.49973 -16.21797 -15.98717 -15.77669 -15.26176 -15.11246 -14.94800 -14.81647 -14.62740 -14.38052 -13.97901 -13.76653 -13.44147 -13.37835 -12.91412 -12.84552 -12.52582 -12.41851 -12.27851 -12.01285 -11.71918 -11.38025 -11.31211 -11.17388 -11.08655 -10.81683 -10.75846 -10.67417 -10.41474 -10.21193 -10.11477 -10.03066 -9.86188 -9.73673 -9.26915 -8.96639 -8.35160 -7.64722 -7.53855 -6.82572 -4.46175 1.39052 2.05165 2.24779 2.73103 2.76318 3.03848 3.05413 3.11224 3.36556 3.67296 3.87665 4.04500 4.07478 4.38995 4.51158 4.53650 4.69829 4.71496 4.95562 4.98918 5.11283 5.26950 5.28610 5.36708 5.50485 5.52527 5.63326 5.73874 5.76849 5.92310 5.96492 5.98885 6.02491 6.10574 6.18314 6.19797 6.28142 6.53532 6.65077 6.85507 6.94144 7.00579 7.16459 7.33569 7.61930 7.73355 7.83144 7.83417 7.95236 8.11939 8.45090 8.75498 8.78075 8.84259 10.11374 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.002449 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.391819 B =11431.425093 C =12010.835505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.102 3.898 10 C -0.212 4.212 11 C -0.097 4.097 12 C -0.226 4.226 13 C -0.121 4.121 14 C 0.567 3.433 15 O -0.542 6.542 16 N -0.616 5.616 17 C 0.096 3.904 18 C -0.129 4.129 19 C -0.098 4.098 20 C 0.132 3.868 21 N -0.372 5.372 22 C 0.252 3.748 23 N -0.550 5.550 24 C 0.193 3.807 25 N -0.315 5.315 26 C -0.124 4.124 27 C 0.115 3.885 28 C -0.100 4.100 29 H 0.285 0.715 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.216 0.784 41 H 0.215 0.785 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.959 -10.700 -14.577 18.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.099 3.901 10 C -0.232 4.232 11 C -0.115 4.115 12 C -0.246 4.246 13 C -0.124 4.124 14 C 0.359 3.641 15 O -0.419 6.419 16 N -0.350 5.350 17 C -0.026 4.026 18 C -0.168 4.168 19 C -0.117 4.117 20 C 0.010 3.990 21 N -0.162 5.162 22 C -0.045 4.045 23 N -0.278 5.278 24 C -0.110 4.110 25 N -0.143 5.143 26 C -0.163 4.163 27 C -0.008 4.008 28 C -0.120 4.120 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.233 0.767 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.109 0.891 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.704 -10.458 -14.190 17.834 hybrid contribution 0.400 0.822 -0.015 0.914 sum -2.304 -9.637 -14.205 17.319 Atomic orbital electron populations 1.69797 1.07491 1.29895 1.33372 1.25979 0.94786 1.01528 0.92418 0.86332 0.80099 0.80157 0.79991 1.18760 1.20221 1.18915 1.19560 0.97844 0.90930 1.40600 0.90116 1.17572 0.91134 0.92462 0.88894 1.21101 1.03575 0.92812 1.05728 1.20456 0.96098 0.96743 0.98218 1.20511 1.01122 0.95023 1.07906 1.19409 0.96192 0.95375 1.01430 1.19003 0.86004 0.80100 0.79004 1.90708 1.47485 1.34351 1.69374 1.47979 1.19083 1.27015 1.40969 1.22242 0.94398 0.90547 0.95453 1.21977 0.96005 1.02859 0.95915 1.21481 0.97676 1.00256 0.92336 1.22034 0.82393 1.02511 0.92053 1.50590 1.20827 1.20168 1.24651 1.26067 0.91580 0.98471 0.88400 1.70538 1.16667 1.10028 1.30530 1.26000 0.98597 0.96072 0.90324 1.78042 1.04188 1.07894 1.24188 1.21916 0.99336 0.97923 0.97104 1.21397 0.87087 1.02862 0.89428 1.21515 0.97027 0.95730 0.97704 0.90337 0.88639 0.88851 0.88313 0.92056 0.86138 0.90417 0.90925 0.89414 0.89053 0.87952 0.76720 0.76895 0.91323 0.91662 0.92193 0.89072 0.85418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.53 10.95 55.55 0.61 -19.93 16 2 C 0.07 1.79 5.15 -17.34 -0.09 1.70 16 3 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 4 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.79 9.05 -37.73 -0.34 -12.13 16 8 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 9 C 0.10 2.62 5.56 -106.87 -0.59 2.02 16 10 C -0.21 -4.87 9.78 -38.81 -0.38 -5.25 16 11 C -0.10 -1.98 10.01 -39.73 -0.40 -2.38 16 12 C -0.23 -4.56 7.36 -38.92 -0.29 -4.85 16 13 C -0.12 -2.76 5.28 -105.04 -0.55 -3.31 16 14 C 0.57 12.22 7.38 -12.31 -0.09 12.13 16 15 O -0.54 -13.58 16.24 5.32 0.09 -13.50 16 16 N -0.62 -10.04 2.97 -173.86 -0.52 -10.56 16 17 C 0.10 1.25 4.77 -3.71 -0.02 1.23 16 18 C -0.13 -1.24 5.36 -26.61 -0.14 -1.38 16 19 C -0.10 -0.89 2.25 -90.58 -0.20 -1.09 16 20 C 0.13 0.92 5.94 -4.04 -0.02 0.90 16 21 N -0.37 -3.32 3.12 -62.63 -0.20 -3.51 16 22 C 0.25 2.09 12.63 -90.66 -1.14 0.95 16 23 N -0.55 -5.79 11.19 -15.83 -0.18 -5.96 16 24 C 0.19 1.90 13.03 -91.81 -1.20 0.70 16 25 N -0.32 -3.42 12.52 29.29 0.37 -3.06 16 26 C -0.12 -1.36 5.26 -26.61 -0.14 -1.50 16 27 C 0.12 1.62 6.44 -3.71 -0.02 1.60 16 28 C -0.10 -2.57 8.25 -38.45 -0.32 -2.89 16 29 H 0.29 6.93 8.30 -40.82 -0.34 6.59 16 30 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 31 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.10 1.72 6.04 -52.49 -0.32 1.40 16 33 H 0.06 0.72 8.05 -51.93 -0.42 0.30 16 34 H 0.12 1.78 4.47 -51.93 -0.23 1.55 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.50 8.09 -51.93 -0.42 0.08 16 40 H 0.22 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.21 1.38 8.06 -52.48 -0.42 0.96 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.47 7.00 -51.92 -0.36 1.11 16 46 H 0.13 3.58 6.12 -52.48 -0.32 3.25 16 LS Contribution 376.11 15.07 5.67 5.67 Total: -1.00 -32.23 376.11 -11.38 -43.61 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.25 Total: 7.45 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -5.94 Total: -13.56 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.09 Total: -43.02 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.23 -11.38 -43.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190725988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.586 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds