Wall clock time and date at job start Sat Apr 11 2020 06:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86796 * 120.00135 * 2 1 4 4 H 1.48506 * 109.46949 * 239.99931 * 3 2 1 5 5 H 1.48500 * 109.46881 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47472 * 119.99488 * 3 2 1 7 7 C 1.39941 * 119.99874 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99759 * 196.86118 * 7 2 1 9 9 C 1.41437 * 120.00012 * 16.86555 * 7 2 1 10 10 C 1.40784 * 120.17841 * 205.32399 * 9 7 2 11 11 C 1.37709 * 120.04078 * 180.02562 * 10 9 7 12 12 C 1.38366 * 120.41314 * 359.77994 * 11 10 9 13 13 C 1.39883 * 120.35602 * 0.48040 * 12 11 10 14 14 C 1.47890 * 120.02181 * 179.78247 * 13 12 11 15 15 O 1.21550 * 119.99513 * 144.44752 * 14 13 12 16 16 N 1.34765 * 120.00058 * 324.44189 * 14 13 12 17 17 C 1.46926 * 120.63357 * 354.26857 * 16 14 13 18 18 C 1.53198 * 108.77376 * 233.58158 * 17 16 14 19 19 C 1.53033 * 109.31666 * 305.36410 * 18 17 16 20 20 C 1.52999 * 109.46437 * 181.38404 * 19 18 17 21 21 N 1.46496 * 109.47160 * 175.00032 * 20 19 18 22 22 C 1.34427 * 126.82326 * 125.00237 * 21 20 19 23 23 N 1.30830 * 108.07945 * 179.97438 * 22 21 20 24 24 C 1.33241 * 109.82862 * 0.02562 * 23 22 21 25 25 N 1.30721 * 108.94544 * 0.25407 * 24 23 22 26 26 C 1.53049 * 109.53709 * 61.36109 * 19 18 17 27 27 C 1.46933 * 120.63212 * 174.23953 * 16 14 13 28 28 C 1.39028 * 119.94713 * 359.50002 * 13 12 11 29 29 H 0.97002 * 120.00000 * 0.02562 * 1 2 3 30 30 H 1.08006 * 119.97840 * 0.02562 * 10 9 7 31 31 H 1.07999 * 119.79263 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.82088 * 180.23153 * 12 11 10 33 33 H 1.09001 * 109.59028 * 113.79979 * 17 16 14 34 34 H 1.08997 * 109.70531 * 353.43491 * 17 16 14 35 35 H 1.09000 * 109.49595 * 185.40499 * 18 17 16 36 36 H 1.09001 * 109.49311 * 65.31596 * 18 17 16 37 37 H 1.09000 * 109.46022 * 301.36182 * 19 18 17 38 38 H 1.09000 * 109.47133 * 54.99425 * 20 19 18 39 39 H 1.08998 * 109.46904 * 294.99968 * 20 19 18 40 40 H 1.08001 * 125.96000 * 359.97351 * 22 21 20 41 41 H 1.08003 * 125.52771 * 180.02562 * 24 23 22 42 42 H 1.09003 * 109.49518 * 58.59046 * 26 19 18 43 43 H 1.08996 * 109.49522 * 178.68439 * 26 19 18 44 44 H 1.08997 * 109.58849 * 246.20989 * 27 16 14 45 45 H 1.09009 * 109.58232 * 6.48569 * 27 16 14 46 46 H 1.08007 * 120.19725 * 180.28064 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0531 -1.2319 0.2718 9 6 1.3463 -2.4106 -0.3543 10 6 1.8167 -3.6475 0.1262 11 6 1.1707 -4.8129 -0.2215 12 6 0.0552 -4.7782 -1.0394 13 6 -0.4235 -3.5592 -1.5308 14 6 -1.6136 -3.5311 -2.4083 15 8 -2.4037 -2.6106 -2.3315 16 7 -1.8220 -4.5261 -3.2931 17 6 -0.8156 -5.5788 -3.4866 18 6 -0.4756 -5.6679 -4.9777 19 6 -1.7630 -5.8743 -5.7790 20 6 -1.4239 -5.9982 -7.2657 21 7 -2.6398 -6.3143 -8.0193 22 6 -3.1394 -5.6335 -9.0652 23 7 -4.2334 -6.2351 -9.4561 24 6 -4.4638 -7.2985 -8.6871 25 7 -3.5182 -7.3856 -7.7888 26 6 -2.6952 -4.6792 -5.5665 27 6 -3.0603 -4.5790 -4.0822 28 6 0.2169 -2.3735 -1.1888 29 1 -0.4850 0.8401 -0.0004 30 1 2.6848 -3.6824 0.7679 31 1 1.5347 -5.7595 0.1497 32 1 -0.4463 -5.6977 -1.3030 33 1 -1.2153 -6.5338 -3.1454 34 1 0.0838 -5.3360 -2.9208 35 1 0.1975 -6.5082 -5.1479 36 1 0.0072 -4.7441 -5.2965 37 1 -2.2582 -6.7850 -5.4423 38 1 -0.6921 -6.7936 -7.4064 39 1 -1.0094 -5.0557 -7.6236 40 1 -2.7121 -4.7449 -9.5059 41 1 -5.2987 -7.9763 -8.7872 42 1 -2.1915 -3.7647 -5.8798 43 1 -3.6020 -4.8158 -6.1558 44 1 -3.6431 -5.4523 -3.7894 45 1 -3.6439 -3.6750 -3.9074 46 1 -0.1519 -1.4296 -1.5623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190725988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:11 Heat of formation + Delta-G solvation = 61.573060 kcal Electronic energy + Delta-G solvation = -28958.307543 eV Core-core repulsion = 25041.783868 eV Total energy + Delta-G solvation = -3916.523674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.95804 -41.43808 -39.25806 -38.53596 -36.01975 -35.50967 -33.33013 -32.61211 -32.10197 -31.42802 -31.24943 -28.61341 -27.29430 -25.53067 -24.53906 -23.50762 -22.89132 -22.82425 -22.37233 -21.31111 -20.21529 -19.26788 -18.18498 -17.69798 -17.38107 -16.85146 -16.65526 -16.56777 -16.23746 -15.86128 -15.49476 -15.33012 -15.09275 -15.04335 -14.67026 -14.55261 -14.35848 -14.28806 -13.99604 -13.57006 -13.50087 -13.30314 -12.87909 -12.83985 -12.72751 -12.56288 -12.27719 -12.23096 -12.00969 -11.92890 -11.71659 -11.54719 -11.48274 -11.07415 -10.93848 -10.73676 -10.65141 -10.52507 -9.74837 -9.39458 -9.35113 -8.65060 -6.38248 0.46935 0.75306 1.00219 1.36057 1.47266 1.48043 1.50086 1.90720 2.06269 2.07053 2.18642 2.73160 3.39853 3.55874 3.57085 3.65580 3.72204 3.86148 3.94168 4.08343 4.18166 4.24643 4.27455 4.41995 4.49560 4.52734 4.58038 4.63116 4.72013 4.78105 4.85509 4.88611 4.90135 5.01758 5.06357 5.09697 5.20731 5.30854 5.35112 5.36619 5.51181 5.53037 5.62571 5.85087 5.95785 5.96721 6.04123 6.27925 6.37908 6.61261 6.88147 6.94756 7.17968 7.20950 8.30572 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018608 B = 0.002449 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.391819 B =11431.425093 C =12010.835505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.028 3.972 3 Si 0.982 3.018 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.496 4.496 8 H 0.085 0.915 9 C 0.070 3.930 10 C -0.216 4.216 11 C -0.093 4.093 12 C -0.200 4.200 13 C -0.129 4.129 14 C 0.559 3.441 15 O -0.593 6.593 16 N -0.602 5.602 17 C 0.086 3.914 18 C -0.120 4.120 19 C -0.087 4.087 20 C 0.132 3.868 21 N -0.375 5.375 22 C 0.254 3.746 23 N -0.582 5.582 24 C 0.186 3.814 25 N -0.344 5.344 26 C -0.112 4.112 27 C 0.111 3.889 28 C -0.134 4.134 29 H 0.285 0.715 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.252 0.748 41 H 0.235 0.765 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.558 -13.246 -15.961 20.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.526 4.526 8 H 0.103 0.897 9 C 0.068 3.932 10 C -0.236 4.236 11 C -0.111 4.111 12 C -0.220 4.220 13 C -0.132 4.132 14 C 0.350 3.650 15 O -0.475 6.475 16 N -0.334 5.334 17 C -0.035 4.035 18 C -0.159 4.159 19 C -0.107 4.107 20 C 0.011 3.989 21 N -0.165 5.165 22 C -0.042 4.042 23 N -0.310 5.310 24 C -0.117 4.117 25 N -0.173 5.173 26 C -0.150 4.150 27 C -0.011 4.011 28 C -0.155 4.155 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.157 0.843 32 H 0.154 0.846 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.267 0.733 41 H 0.251 0.749 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.275 -13.076 -15.597 20.393 hybrid contribution -0.098 1.364 0.366 1.416 sum -1.373 -11.712 -15.231 19.262 Atomic orbital electron populations 1.69918 1.09274 1.30584 1.35584 1.26876 0.95357 1.05019 0.91394 0.85247 0.78651 0.75434 0.80402 1.18118 1.19970 1.17718 1.19845 0.98252 0.92008 1.42471 0.89666 1.17916 0.91715 0.93934 0.89621 1.21395 1.03975 0.92779 1.05449 1.20919 0.95351 0.97706 0.97115 1.20943 1.00316 0.95184 1.05541 1.19657 0.96337 0.95547 1.01635 1.18964 0.85297 0.80798 0.79903 1.90677 1.49027 1.36639 1.71130 1.48004 1.20247 1.26027 1.39119 1.22501 0.92823 0.90024 0.98163 1.21919 0.96703 1.04116 0.93113 1.21339 0.96653 0.98570 0.94097 1.22167 0.82012 1.04533 0.90169 1.50682 1.21054 1.19806 1.24971 1.26781 0.90811 0.98782 0.87809 1.70548 1.18022 1.10822 1.31573 1.26489 0.98999 0.96260 0.89907 1.77974 1.05021 1.09188 1.25072 1.21791 0.99988 0.98939 0.94308 1.21552 0.86050 1.02124 0.91379 1.21307 0.98715 0.95613 0.99841 0.90418 0.87350 0.84311 0.84575 0.89642 0.87676 0.87061 0.91388 0.90035 0.87313 0.85455 0.73269 0.74926 0.91758 0.91502 0.90685 0.91921 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.47 10.95 21.83 0.24 -46.23 16 2 C 0.03 1.46 5.15 85.26 0.44 1.90 16 3 Si 0.98 39.03 29.59 68.60 2.03 41.06 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 7 C -0.50 -26.51 9.05 23.47 0.21 -26.30 16 8 H 0.09 4.26 7.90 -2.91 -0.02 4.24 16 9 C 0.07 3.74 5.56 -21.32 -0.12 3.62 16 10 C -0.22 -9.78 9.78 22.77 0.22 -9.56 16 11 C -0.09 -3.53 10.01 22.18 0.22 -3.31 16 12 C -0.20 -7.65 7.36 22.70 0.17 -7.49 16 13 C -0.13 -5.96 5.28 -20.13 -0.11 -6.07 16 14 C 0.56 24.74 7.38 86.80 0.64 25.38 16 15 O -0.59 -31.57 16.24 -3.87 -0.06 -31.63 16 16 N -0.60 -19.12 2.97 -822.25 -2.44 -21.56 16 17 C 0.09 1.97 4.77 86.36 0.41 2.39 16 18 C -0.12 -1.86 5.36 30.67 0.16 -1.69 16 19 C -0.09 -1.29 2.25 -10.77 -0.02 -1.32 16 20 C 0.13 1.33 5.94 86.38 0.51 1.85 16 21 N -0.37 -5.63 3.12 -352.07 -1.10 -6.72 16 22 C 0.25 3.57 12.63 180.36 2.28 5.85 16 23 N -0.58 -11.26 11.19 -204.00 -2.28 -13.54 16 24 C 0.19 3.39 13.03 180.76 2.36 5.75 16 25 N -0.34 -6.78 12.52 -61.24 -0.77 -7.55 16 26 C -0.11 -2.26 5.26 30.67 0.16 -2.10 16 27 C 0.11 3.07 6.44 86.36 0.56 3.63 16 28 C -0.13 -7.31 8.25 23.01 0.19 -7.12 16 29 H 0.29 14.87 8.30 -92.71 -0.77 14.10 16 30 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 32 H 0.14 4.16 6.04 -2.91 -0.02 4.15 16 33 H 0.09 1.62 8.05 -2.39 -0.02 1.60 16 34 H 0.11 2.78 4.47 -2.39 -0.01 2.77 16 35 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 38 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.13 0.69 8.09 -2.39 -0.02 0.67 16 40 H 0.25 1.26 8.06 -2.91 -0.02 1.24 16 41 H 0.23 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.37 7.71 -2.39 -0.02 1.35 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.06 2.11 7.00 -2.38 -0.02 2.09 16 46 H 0.09 5.62 6.12 -2.91 -0.02 5.60 16 Total: -1.00 -76.91 376.11 4.90 -72.01 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 1.00 Total: 28.77 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 8.28 Total: -14.60 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -6.35 Total: -95.61 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.06 Total: -31.63 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -76.91 4.90 -72.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190725988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.585 kcal (2) G-P(sol) polarization free energy of solvation -76.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds