Wall clock time and date at job start Sat Apr 11 2020 06:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99780 * 2 1 4 4 H 1.48503 * 109.46737 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47316 * 300.00260 * 3 2 1 6 6 H 1.48508 * 109.46898 * 60.00411 * 3 2 1 7 7 C 1.37874 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00146 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46902 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99759 * 263.50067 * 10 9 7 12 12 C 1.52997 * 109.47664 * 274.93220 * 11 10 9 13 13 C 1.53001 * 117.50117 * 243.75168 * 12 11 10 14 14 C 1.52999 * 117.50391 * 175.08920 * 12 11 10 15 15 C 1.34779 * 120.00024 * 83.50620 * 10 9 7 16 16 O 1.21595 * 119.99635 * 184.20352 * 15 10 9 17 17 C 1.47517 * 119.99874 * 4.48200 * 15 10 9 18 18 C 1.36601 * 125.76991 * 173.70131 * 17 15 10 19 19 N 1.34817 * 106.83797 * 179.83635 * 18 17 15 20 20 C 1.46498 * 126.59392 * 180.14830 * 19 18 17 21 21 C 1.50696 * 109.47175 * 125.29095 * 20 19 18 22 22 C 1.38238 * 120.00387 * 269.72632 * 21 20 19 23 23 C 1.38237 * 120.00321 * 179.76490 * 22 21 20 24 24 C 1.38233 * 119.99719 * 0.50695 * 23 22 21 25 25 C 1.38237 * 120.00014 * 359.75105 * 24 23 22 26 26 C 1.38230 * 119.99928 * 359.97438 * 25 24 23 27 27 N 1.40209 * 106.81209 * 0.41496 * 19 18 17 28 28 N 1.28759 * 108.36735 * 359.73246 * 27 19 18 29 29 H 0.96996 * 120.00620 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46881 * 60.00242 * 9 7 2 31 31 H 1.08994 * 109.46981 * 299.99920 * 9 7 2 32 32 H 1.09001 * 109.47276 * 34.93662 * 11 10 9 33 33 H 1.09002 * 109.46892 * 154.93492 * 11 10 9 34 34 H 1.09004 * 115.54429 * 29.41672 * 12 11 10 35 35 H 1.08996 * 117.49667 * 359.97438 * 13 12 11 36 36 H 1.09006 * 117.49484 * 145.01897 * 13 12 11 37 37 H 1.09000 * 117.49726 * 214.98399 * 14 12 11 38 38 H 1.09001 * 117.49304 * 359.97438 * 14 12 11 39 39 H 1.07996 * 126.57696 * 359.96342 * 18 17 15 40 40 H 1.09007 * 109.47484 * 245.29126 * 20 19 18 41 41 H 1.09003 * 109.47339 * 5.29005 * 20 19 18 42 42 H 1.08005 * 119.99276 * 0.02562 * 22 21 20 43 43 H 1.07999 * 119.99674 * 180.23113 * 23 22 21 44 44 H 1.07998 * 119.99880 * 179.72114 * 24 23 22 45 45 H 1.08000 * 119.99741 * 179.97438 * 25 24 23 46 46 H 1.08006 * 119.99566 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.5700 -4.2626 -1.2611 12 6 1.5374 -5.3399 -1.5990 13 6 2.0189 -6.7915 -1.6417 14 6 1.6798 -6.0586 -2.9421 15 6 2.7415 -4.0390 1.1592 16 8 3.5885 -4.9114 1.1518 17 6 2.2985 -3.4517 2.4379 18 6 2.6712 -3.8744 3.6822 19 7 2.0495 -3.0721 4.5696 20 6 2.1485 -3.1425 6.0295 21 6 2.5721 -1.8009 6.5696 22 6 3.9147 -1.5125 6.7290 23 6 4.3034 -0.2801 7.2199 24 6 3.3492 0.6602 7.5611 25 6 2.0066 0.3698 7.4067 26 6 1.6181 -0.8605 6.9105 27 7 1.2851 -2.1613 3.8267 28 7 1.4557 -2.4139 2.5757 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8896 32 1 2.5950 -3.5203 -2.0589 33 1 3.5538 -4.7212 -1.1606 34 1 0.5280 -5.1550 -1.2316 35 1 3.0715 -6.9790 -1.4295 36 1 1.3260 -7.5617 -1.3028 37 1 0.7641 -6.3469 -3.4582 38 1 2.5090 -5.7637 -3.5852 39 1 3.3377 -4.6927 3.9112 40 1 1.1784 -3.4123 6.4470 41 1 2.8859 -3.8955 6.3078 42 1 4.6600 -2.2487 6.4662 43 1 5.3524 -0.0535 7.3409 44 1 3.6528 1.6214 7.9488 45 1 1.2611 1.1043 7.6736 46 1 0.5690 -1.0874 6.7903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264068897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:15 Heat of formation + Delta-G solvation = 130.413416 kcal Electronic energy + Delta-G solvation = -29145.868402 eV Core-core repulsion = 25232.329869 eV Total energy + Delta-G solvation = -3913.538532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.59291 -39.36769 -38.78583 -36.82310 -34.93046 -34.40756 -32.22939 -31.41950 -31.04184 -30.24353 -27.79857 -26.83437 -26.00711 -23.14923 -22.75462 -22.38284 -22.21690 -21.97741 -21.06926 -20.24904 -18.85303 -17.24566 -16.76694 -16.33099 -15.95185 -15.84028 -15.57431 -15.18360 -14.87956 -14.68893 -14.27120 -14.26948 -13.92853 -13.57724 -13.45878 -13.27622 -12.84499 -12.78430 -12.63101 -12.20451 -11.86320 -11.63558 -11.50781 -11.32984 -11.21839 -11.19860 -11.11286 -10.78881 -10.71824 -10.20197 -10.04892 -9.84685 -9.71016 -9.56787 -9.41979 -9.19526 -9.03810 -9.00931 -8.65330 -8.23731 -7.57668 -5.89998 -3.91103 1.03478 1.29032 1.68389 2.56615 2.57796 3.36712 3.44424 3.48154 3.70032 3.86733 4.08976 4.19211 4.31608 4.49764 4.55916 4.80886 4.86581 4.89044 4.96651 5.10715 5.12079 5.23280 5.29391 5.35396 5.38329 5.45238 5.46807 5.57780 5.76820 5.84145 5.85314 5.88066 5.91449 6.11712 6.17185 6.28227 6.29310 6.36607 6.37819 6.39569 6.43941 6.65824 6.79429 6.84506 6.95864 7.60722 7.81360 8.01998 8.37291 8.40592 8.70763 9.03561 9.13700 9.71496 11.18535 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009998 B = 0.003835 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.958940 B = 7300.031281 C = 9283.174991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.073 3.927 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.228 3.772 10 N -0.577 5.577 11 C 0.148 3.852 12 C -0.159 4.159 13 C -0.177 4.177 14 C -0.180 4.180 15 C 0.601 3.399 16 O -0.577 6.577 17 C -0.088 4.088 18 C 0.071 3.929 19 N -0.373 5.373 20 C 0.169 3.831 21 C -0.113 4.113 22 C -0.098 4.098 23 C -0.125 4.125 24 C -0.109 4.109 25 C -0.122 4.122 26 C -0.080 4.080 27 N -0.076 5.076 28 N -0.134 5.134 29 H 0.259 0.741 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.194 0.806 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.212 -7.318 12.936 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.129 4.129 3 Si 0.713 3.287 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.070 0.930 9 C 0.108 3.892 10 N -0.305 5.305 11 C 0.024 3.976 12 C -0.179 4.179 13 C -0.214 4.214 14 C -0.217 4.217 15 C 0.388 3.612 16 O -0.458 6.458 17 C -0.226 4.226 18 C -0.085 4.085 19 N -0.158 5.158 20 C 0.047 3.953 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.143 4.143 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.099 4.099 27 N -0.056 5.056 28 N -0.008 5.008 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.211 0.789 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.140 0.860 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.143 0.857 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.503 -6.453 13.019 14.947 hybrid contribution 1.112 0.402 0.062 1.184 sum 4.615 -6.051 13.081 15.134 Atomic orbital electron populations 1.69918 1.05742 1.26365 1.50538 1.24737 0.94624 0.98423 0.95135 0.86659 0.80162 0.84453 0.77424 1.20080 1.21141 1.21086 1.21273 0.92823 0.90451 1.50505 0.93006 1.19918 0.87736 0.81931 0.99626 1.48079 1.44187 1.33794 1.04462 1.20901 0.96433 0.93737 0.86499 1.22795 1.01274 0.93503 1.00280 1.22984 1.01949 0.95252 1.01249 1.22908 1.02992 1.05010 0.90828 1.16794 0.80911 0.81001 0.82487 1.90669 1.33966 1.33829 1.87363 1.21468 1.06192 1.00504 0.94454 1.23141 0.98595 0.97498 0.89290 1.50628 1.33767 1.24102 1.07323 1.20685 1.03952 0.95872 0.74749 1.19713 0.93983 0.95971 1.01706 1.21048 0.95014 0.97331 0.98294 1.21114 0.99626 0.93731 0.99863 1.21232 0.93269 0.99154 0.99098 1.21178 0.96196 0.96836 0.99831 1.21088 0.99546 0.93079 0.96170 1.82176 1.14853 1.11428 0.97108 1.75386 1.09343 1.08564 1.07478 0.93106 0.95187 0.91012 0.90024 0.90426 0.87700 0.88739 0.89532 0.89162 0.88904 0.78909 0.88093 0.87529 0.86017 0.85920 0.86001 0.85731 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.88 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.51 -14.22 8.43 -34.44 -0.29 -14.52 16 8 H 0.05 1.50 7.81 -52.48 -0.41 1.09 16 9 C 0.23 5.79 4.79 -5.19 -0.02 5.77 16 10 N -0.58 -12.91 2.48 -176.30 -0.44 -13.34 16 11 C 0.15 2.82 5.74 -4.05 -0.02 2.80 16 12 C -0.16 -2.64 6.01 -90.62 -0.54 -3.19 16 13 C -0.18 -2.54 10.18 -26.69 -0.27 -2.81 16 14 C -0.18 -2.42 10.25 -26.69 -0.27 -2.70 16 15 C 0.60 13.34 7.61 -12.48 -0.09 13.24 16 16 O -0.58 -12.91 16.36 5.28 0.09 -12.82 16 17 C -0.09 -1.84 6.69 -83.55 -0.56 -2.40 16 18 C 0.07 1.14 11.28 -16.83 -0.19 0.95 16 19 N -0.37 -5.75 3.68 -62.24 -0.23 -5.98 16 20 C 0.17 1.73 6.67 -5.20 -0.03 1.69 16 21 C -0.11 -1.31 5.33 -104.63 -0.56 -1.87 16 22 C -0.10 -1.09 9.70 -39.58 -0.38 -1.47 16 23 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 24 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 25 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 26 C -0.08 -0.95 9.70 -39.59 -0.38 -1.34 16 27 N -0.08 -1.55 13.64 60.35 0.82 -0.73 16 28 N -0.13 -3.13 8.10 32.85 0.27 -2.86 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.03 0.80 8.02 -51.93 -0.42 0.38 16 31 H 0.07 1.95 5.25 -51.93 -0.27 1.67 16 32 H 0.08 1.55 8.11 -51.93 -0.42 1.13 16 33 H 0.08 1.47 6.96 -51.93 -0.36 1.11 16 34 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 35 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.19 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 41 H 0.11 0.72 8.03 -51.93 -0.42 0.31 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 43 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 46 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -34.28 395.90 -9.23 -43.51 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.50 Total: 3.12 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -4.92 Total: -8.93 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 1.16 Total: -48.11 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.28 -9.23 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264068897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.926 kcal (2) G-P(sol) polarization free energy of solvation -34.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds