Wall clock time and date at job start Sat Apr 11 2020 06:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99780 * 2 1 4 4 H 1.48503 * 109.46737 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47316 * 300.00260 * 3 2 1 6 6 H 1.48508 * 109.46898 * 60.00411 * 3 2 1 7 7 C 1.37874 * 120.00074 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99920 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00146 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.46902 * 180.02562 * 9 7 2 11 11 C 1.46496 * 119.99759 * 263.50067 * 10 9 7 12 12 C 1.52997 * 109.47664 * 274.93220 * 11 10 9 13 13 C 1.53001 * 117.50117 * 243.75168 * 12 11 10 14 14 C 1.52999 * 117.50391 * 175.08920 * 12 11 10 15 15 C 1.34779 * 120.00024 * 83.50620 * 10 9 7 16 16 O 1.21595 * 119.99635 * 184.20352 * 15 10 9 17 17 C 1.47517 * 119.99874 * 4.48200 * 15 10 9 18 18 C 1.36601 * 125.76991 * 173.70131 * 17 15 10 19 19 N 1.34817 * 106.83797 * 179.83635 * 18 17 15 20 20 C 1.46498 * 126.59392 * 180.14830 * 19 18 17 21 21 C 1.50696 * 109.47175 * 125.29095 * 20 19 18 22 22 C 1.38238 * 120.00387 * 269.72632 * 21 20 19 23 23 C 1.38237 * 120.00321 * 179.76490 * 22 21 20 24 24 C 1.38233 * 119.99719 * 0.50695 * 23 22 21 25 25 C 1.38237 * 120.00014 * 359.75105 * 24 23 22 26 26 C 1.38230 * 119.99928 * 359.97438 * 25 24 23 27 27 N 1.40209 * 106.81209 * 0.41496 * 19 18 17 28 28 N 1.28759 * 108.36735 * 359.73246 * 27 19 18 29 29 H 0.96996 * 120.00620 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46881 * 60.00242 * 9 7 2 31 31 H 1.08994 * 109.46981 * 299.99920 * 9 7 2 32 32 H 1.09001 * 109.47276 * 34.93662 * 11 10 9 33 33 H 1.09002 * 109.46892 * 154.93492 * 11 10 9 34 34 H 1.09004 * 115.54429 * 29.41672 * 12 11 10 35 35 H 1.08996 * 117.49667 * 359.97438 * 13 12 11 36 36 H 1.09006 * 117.49484 * 145.01897 * 13 12 11 37 37 H 1.09000 * 117.49726 * 214.98399 * 14 12 11 38 38 H 1.09001 * 117.49304 * 359.97438 * 14 12 11 39 39 H 1.07996 * 126.57696 * 359.96342 * 18 17 15 40 40 H 1.09007 * 109.47484 * 245.29126 * 20 19 18 41 41 H 1.09003 * 109.47339 * 5.29005 * 20 19 18 42 42 H 1.08005 * 119.99276 * 0.02562 * 22 21 20 43 43 H 1.07999 * 119.99674 * 180.23113 * 23 22 21 44 44 H 1.07998 * 119.99880 * 179.72114 * 24 23 22 45 45 H 1.08000 * 119.99741 * 179.97438 * 25 24 23 46 46 H 1.08006 * 119.99566 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.5700 -4.2626 -1.2611 12 6 1.5374 -5.3399 -1.5990 13 6 2.0189 -6.7915 -1.6417 14 6 1.6798 -6.0586 -2.9421 15 6 2.7415 -4.0390 1.1592 16 8 3.5885 -4.9114 1.1518 17 6 2.2985 -3.4517 2.4379 18 6 2.6712 -3.8744 3.6822 19 7 2.0495 -3.0721 4.5696 20 6 2.1485 -3.1425 6.0295 21 6 2.5721 -1.8009 6.5696 22 6 3.9147 -1.5125 6.7290 23 6 4.3034 -0.2801 7.2199 24 6 3.3492 0.6602 7.5611 25 6 2.0066 0.3698 7.4067 26 6 1.6181 -0.8605 6.9105 27 7 1.2851 -2.1613 3.8267 28 7 1.4557 -2.4139 2.5757 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8896 32 1 2.5950 -3.5203 -2.0589 33 1 3.5538 -4.7212 -1.1606 34 1 0.5280 -5.1550 -1.2316 35 1 3.0715 -6.9790 -1.4295 36 1 1.3260 -7.5617 -1.3028 37 1 0.7641 -6.3469 -3.4582 38 1 2.5090 -5.7637 -3.5852 39 1 3.3377 -4.6927 3.9112 40 1 1.1784 -3.4123 6.4470 41 1 2.8859 -3.8955 6.3078 42 1 4.6600 -2.2487 6.4662 43 1 5.3524 -0.0535 7.3409 44 1 3.6528 1.6214 7.9488 45 1 1.2611 1.1043 7.6736 46 1 0.5690 -1.0874 6.7903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264068897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:14 Heat of formation + Delta-G solvation = 111.326109 kcal Electronic energy + Delta-G solvation = -29146.696089 eV Core-core repulsion = 25232.329869 eV Total energy + Delta-G solvation = -3914.366220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.00530 -40.52413 -40.09295 -38.15842 -36.47555 -35.74904 -34.30678 -32.51551 -31.86671 -31.64723 -29.56063 -28.20263 -27.41100 -25.05509 -23.92833 -23.53178 -23.43819 -23.14087 -22.15894 -21.57906 -20.35535 -18.72924 -18.27363 -17.73809 -17.49476 -17.04286 -16.93723 -16.30574 -16.17372 -16.04319 -15.96486 -15.57657 -15.34773 -14.75818 -14.61456 -14.35592 -14.24575 -14.07894 -13.75417 -13.62513 -13.53708 -13.32737 -12.93498 -12.81414 -12.65806 -12.54245 -12.30140 -12.22494 -12.08233 -11.95876 -11.67301 -11.42564 -11.25911 -11.11672 -10.91508 -10.77444 -10.38824 -10.13237 -9.87252 -9.84638 -9.36888 -8.06817 -6.14076 0.13837 0.38820 0.45552 0.96279 1.35101 1.37665 1.46537 1.47490 2.27821 2.42211 2.52447 2.84609 2.97826 3.26317 3.39121 3.54058 3.72013 3.84317 3.88562 4.05352 4.06611 4.08264 4.14016 4.20175 4.22091 4.35691 4.43102 4.51205 4.57886 4.65703 4.74275 4.80710 4.85172 4.90407 4.99195 5.03621 5.05035 5.09184 5.31222 5.32908 5.47378 5.51924 5.55100 5.55991 5.64751 5.85594 5.94024 6.03241 6.24412 6.57445 6.91415 7.19484 7.41790 7.52687 9.00834 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009998 B = 0.003835 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.958940 B = 7300.031281 C = 9283.174991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.286 1.286 7 C -0.511 4.511 8 H 0.035 0.965 9 C 0.248 3.752 10 N -0.585 5.585 11 C 0.148 3.852 12 C -0.186 4.186 13 C -0.167 4.167 14 C -0.156 4.156 15 C 0.598 3.402 16 O -0.584 6.584 17 C -0.130 4.130 18 C 0.103 3.897 19 N -0.352 5.352 20 C 0.158 3.842 21 C -0.126 4.126 22 C -0.108 4.108 23 C -0.136 4.136 24 C -0.117 4.117 25 C -0.138 4.138 26 C -0.100 4.100 27 N -0.107 5.107 28 N -0.183 5.183 29 H 0.261 0.739 30 H 0.011 0.989 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.240 0.760 40 H 0.121 0.879 41 H 0.153 0.847 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.136 0.864 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -8.471 13.984 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.169 4.169 3 Si 0.765 3.235 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.212 1.212 7 C -0.551 4.551 8 H 0.054 0.946 9 C 0.127 3.873 10 N -0.313 5.313 11 C 0.025 3.975 12 C -0.206 4.206 13 C -0.204 4.204 14 C -0.193 4.193 15 C 0.385 3.615 16 O -0.466 6.466 17 C -0.269 4.269 18 C -0.055 4.055 19 N -0.136 5.136 20 C 0.040 3.960 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.154 4.154 24 C -0.136 4.136 25 C -0.156 4.156 26 C -0.118 4.118 27 N -0.087 5.087 28 N -0.055 5.055 29 H 0.070 0.930 30 H 0.029 0.971 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.256 0.744 40 H 0.139 0.861 41 H 0.171 0.829 42 H 0.159 0.841 43 H 0.161 0.839 44 H 0.159 0.841 45 H 0.154 0.846 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.068 -7.600 14.082 16.785 hybrid contribution 0.677 0.714 -0.106 0.990 sum 5.745 -6.886 13.975 16.605 Atomic orbital electron populations 1.70010 1.06840 1.27070 1.51498 1.25358 0.95329 1.01180 0.95014 0.85815 0.78888 0.81130 0.77626 1.20132 1.19828 1.21246 1.21345 0.91975 0.91735 1.50002 0.94619 1.19436 0.87739 0.82249 0.97889 1.48048 1.43900 1.33464 1.05916 1.20990 0.97309 0.94109 0.85077 1.22586 0.99707 0.94387 1.03902 1.23037 1.02150 0.93677 1.01535 1.23034 1.04099 1.02318 0.89887 1.17032 0.80640 0.80903 0.82892 1.90635 1.34194 1.34150 1.87614 1.21633 1.08054 1.01625 0.95625 1.23713 0.97068 0.97155 0.87534 1.50925 1.31474 1.22129 1.09049 1.21286 1.06682 0.96639 0.71428 1.19877 0.94268 0.96469 1.02113 1.21378 0.95243 0.98010 0.97964 1.21475 1.00774 0.93708 0.99457 1.21560 0.93093 1.00153 0.98751 1.21453 0.97073 0.97073 1.00038 1.21293 0.99866 0.93807 0.96877 1.82041 1.16529 1.13259 0.96830 1.75325 1.10951 1.10201 1.09035 0.93001 0.97141 0.92366 0.90835 0.90302 0.89486 0.88764 0.88196 0.87391 0.87669 0.74382 0.86126 0.82923 0.84071 0.83942 0.84056 0.84608 0.85632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.84 13.29 21.45 0.28 -54.56 16 2 C 0.03 1.78 5.46 84.65 0.46 2.25 16 3 Si 0.94 46.37 29.54 68.60 2.03 48.39 16 4 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.27 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 7 C -0.51 -29.34 8.43 25.60 0.22 -29.13 16 8 H 0.04 2.12 7.81 -2.91 -0.02 2.09 16 9 C 0.25 13.18 4.79 85.63 0.41 13.59 16 10 N -0.59 -26.99 2.48 -829.94 -2.05 -29.04 16 11 C 0.15 5.77 5.74 86.38 0.50 6.26 16 12 C -0.19 -6.20 6.01 -10.79 -0.06 -6.27 16 13 C -0.17 -4.53 10.18 30.62 0.31 -4.22 16 14 C -0.16 -3.92 10.25 30.62 0.31 -3.61 16 15 C 0.60 26.75 7.61 86.69 0.66 27.41 16 16 O -0.58 -25.74 16.36 -4.01 -0.07 -25.80 16 17 C -0.13 -5.45 6.69 40.81 0.27 -5.18 16 18 C 0.10 3.09 11.28 83.85 0.95 4.04 16 19 N -0.35 -10.16 3.68 -350.83 -1.29 -11.46 16 20 C 0.16 2.77 6.67 85.63 0.57 3.34 16 21 C -0.13 -2.70 5.33 -19.87 -0.11 -2.80 16 22 C -0.11 -2.13 9.70 22.27 0.22 -1.92 16 23 C -0.14 -2.65 10.05 22.27 0.22 -2.43 16 24 C -0.12 -2.34 10.05 22.27 0.22 -2.12 16 25 C -0.14 -3.02 10.05 22.27 0.22 -2.80 16 26 C -0.10 -2.32 9.70 22.27 0.22 -2.10 16 27 N -0.11 -4.41 13.64 37.02 0.50 -3.90 16 28 N -0.18 -8.71 8.10 -49.99 -0.41 -9.11 16 29 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.01 0.59 8.02 -2.39 -0.02 0.57 16 31 H 0.06 3.33 5.25 -2.39 -0.01 3.31 16 32 H 0.07 2.89 8.11 -2.39 -0.02 2.87 16 33 H 0.08 3.00 6.96 -2.39 -0.02 2.99 16 34 H 0.09 3.19 8.14 -2.39 -0.02 3.18 16 35 H 0.09 2.57 8.03 -2.39 -0.02 2.55 16 36 H 0.10 2.43 8.14 -2.38 -0.02 2.41 16 37 H 0.11 2.35 8.14 -2.39 -0.02 2.34 16 38 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.24 4.72 8.06 -2.91 -0.02 4.70 16 40 H 0.12 1.70 8.09 -2.38 -0.02 1.68 16 41 H 0.15 1.30 8.03 -2.39 -0.02 1.28 16 42 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 46 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -77.12 395.90 5.57 -71.55 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.98 Total: 19.61 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 5.59 Total: -5.67 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -2.96 Total: -108.07 kcal Atomic # 8 Polarization: -25.74 SS G_CDS: -0.07 Total: -25.80 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -77.12 5.57 -71.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264068897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.871 kcal (2) G-P(sol) polarization free energy of solvation -77.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds